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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1226 fasta sequence
[GTGGAAAAGCAACAGAAAACAGATTGTGGCACCATTATTTTTGTCAGCGTAAATTTGCCAGTGTTCTTGGCATAGAAACGAGCTGTGACGATACAGGTGCAGCTGTTATAGAAACATCAGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGGTGTATTACCCTCCGTAGCAGCTGAACTTCACAAAGAAAACATTGAATCAGTTGTAAATACTGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAAACCAGGTTGAAATTTCCCTATATGATTCTCTTGATAAGTGGTGGTCACGGTATTTTGGGTATTGTTCAAGGGTTAGAGGACTACGTTTTATTAGGTACAGCATTAGACGCCTCCCCAGGTGATGTTCTTGATAAGCTTTCTAGGCGTCTAAAACTAAATCGTTTGTCAGATGAGTGTTTGAAAGGCGTCGCAGGTGGTAAGGCTATCGAAATAATTGCAAAGACTTATAATGGTGATCATCAACGCTTCAATCTACCTTTACCGCGTTCACAATCTAAGGATTGTGATTTCTCATTTACTGGAATCCATGCGGCTGCAGAACAGTTGATCAATAAGTTGGAGTCTGAAAATCGTGGTAGTGGATGCGCTTTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTCCAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGGGGTTGGTTCTAATTGTGTTATTCGTGCCGGTTTAACCGAGGTAGCTAATCATTATAATTTGAGATTTGTTGCTCCTCCACCAAGTCTATGTACTGATAATGGAATTATGATAGCATGGAATGGAGTTTTACTTCAAAAAGAAAATTCTTCTCGTATTATAGAGGATATCTCTTCTGTTGATTTCTGTCCAAGATCTACATTTGGTGTTGACTGTCGGGAGGATGTGAAACAAGCTAACATATCCATTGAACCAATTAAACTATCCAGTGATATTTTCCAACCATAAGTAGTAGTACTCACTCCTGTTTAAACTTTGGAATTTTTGTCAATAATATGTATAAAATTAAGAGTGATTGCAAGAATTTTATGACGTGATTTCTTGAATAAAAGAAATA]
[+] EMBL CD081299 [GTGGAAAAGCAACAGAAAACAGATTGTGGCACCATTATTTTTGTCAGCGTAAATTTGCCAGTGTTCTTGGCATAGAAACGAGCTGTGACGATACAGGTGCAGCTGTTATAGAAACATCAGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGGTGTATTACCCTCCGTAGCAGCTGAACTTCACAAAGAAAACATTGAATCAGTTGTAAATACTGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAAACCAGGTTGAAATTTCCCTATATGATTCTCTTGATAAGTGGTGGTCACGGTATTTTGGGTATTGTTCAAGGGTTAGAGGACTACGTTTTATTAGGTACAGCATTAGACGCCTCCCCAGGTGATGTTCTTGATAAGCTTTCTAGGCGTCTAAAACTAAATCGTTTGTCAGATGAGTGTTTGAAAGGCGTCGCAGGTGGTAAGGCTATCGAAATAATTGCAAAGACTTATAATGGTGATCATCAACGCTTCAATCTACCTTTACCGCGTTCACAATCTAAGGATTGTGATTTCTCATTTACTGGAATCCATGCGGCTGCAGAACAGTTGATCAATAAGTTGGAGTCTGAAAATCGTGGTAGTGGATGCGCTNTATCGATCCAAGATATTGCTGATGTTTGTGC ]
[-] EMBL CD097567 [ TGATAAGCTTTCTAGGCGTCTAAAACTAAATCGTTTGTCAGATGAGTGTTTGAAAGGCGTCGCAGGTGGTAAGGCTATCGAAATAATTGCAAAGACTTATAATGGTGATCATCAACGCTTCAATCTACCTTTACCGCGTTCACAATCTAAGGATTGTGATTTCTCATTTACTGGAATCCATGCGGCTGCAGAACAGTTGATCAATAAGTTGGAGTCTGAAAATCGTGGTAGTGGATGCGCTTTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTCCAGAGCCAGTGTTATTAGAAATCATCCTACAGCTT ]
[+] EMBL CD077641 [ gagGGTGATCATCAACGCTTCAATCTACCTTTACCGCGTTCACAATCTAAGGATTGTGATTTCTCATTTACTGGAATCCATGCGGCTGCAGAACAGTTGATCAATAAGTTGGAGTCTGAAAATCGTGGTAGTGGATGCGCTTTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTCCAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGnng ]
[-] EMBL CD074232 [ CATTTACTGGAATCCATGCGGCTGCAGAACAGTTGATCAATAAGTTGGAGTCTGAAAATCGTGGTAGTGGATGCGCTTTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTCCAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGGGGTTGGTTCTAATTGTGTTATTCGTGCCGGTTTAACCGAGGTAGCTAATCATTATAATTTGAGATTTGTTGCTCCTCCACCAAGTTTATGTACTGATAATGGAATTATGATAGCATGGAATGGAGTTTTACTTCAAAAAGAAAATTCTTCTCGTATTATAGAGGATATCTCTTCTGTTGATTTCTGTCCAAGATATACATTTGGTGTTGACTGTCGGGAGGATGTGAAACAAGCTAACATATCCATTGAACCAATTAAACTATCCAGTGATATTTTCCAACCATAAGTAGTAGTACTCACTCCTGTTTAAACTTTGGAATTTTTGTCAATAATATGTATAAAATTAAGAGTGATTGCAAGAATTTTATGACGTGATTTCTTAAATAAAAGAAATA]
[+] EMBL CD078397 [ TGGTAGTGGATGCGCTTTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTCCAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGGGGTTGGTTCTAATTGTGTTATTCGTGCCGGTTTAACCGAGGTAGCTAATCATTATAATTTGAGATTTGTTGCTCCTCCACCAAGTCTATGTACTGATAATGGAATTATGATAGCATGGAATGGAGTTTTACTTCAAAAAGAAAATTCTTCTCGTATTATAGAGGATATCTCTTCTGTTGATTTCTGTCCAAGATCTACATTTGGTGTTGACTGTCGGGAGGATGTGAAACAAGCTAACATATCCATTGAACCAATTAAACTATCCAGTGATATTTTCCAACCATAAGTAGTAGTACTCACTCCTGTTTAAACTTTGGAATTTTTGTCAATAATATGTATAAAATTAAGAGTGATTGCAAGAATTTTATGACGTGATTTCTTGAAT AAAGAAAT ]
[-] EMBL CD072959 [ TTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTCCAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGGGGTTGGTTCTAATTGTGTTATTCGTGCCGGTTTAACCGAGGTAGCTAATCATTATAATTTGAGATTTGTTGCTCCTCCACCAAGTCTATGTACTGATAATGGAATTATGATAGCATGGAATGGAGTTTTACTTCAAAAAGAAAATTCTTCTCGTATTATAGAGGATATCTCTTCTGTTGATTTCTGTCCAAGATCTACATTTGGTGTTGACTGTCGGGAGGATGTGAAACAAGCTAACATATCCATTGAACCAATTAAACTATCCAGTGATATTTTCCAACCATAAGTAGTAGTACTCACTCCTGTTTAAACTTTGGAATTTTTGTCAATAATATGTATAAAATTAAGAGTGATTGCAAGAATTTTATGACGTGATTTCTTGAATAAAAGAAATA]
[-] EMBL CD075129 [ tanTCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTATGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTGATTCCAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGGGGTTGGTTCTAATTGTGTTATTCGTGCCGGTTTAACCGAGGTAGCTAATCATTATAATTTGAGATTTGTTGCTCCTCCACCAAGTCTATGTACTGATAATGGAATTATGATAGCATGGAATGGAGTTTTACTTCAAAAAGAAAATTCTTCTCGTATTATAGAGGATATCTCTTCTGTTGATTTCTGTCCAAGATCTACATTTGGTGTTGACTGTCGGGAGGATGTGAAACAAGCTAACATATCCATTGAACCAATTAAACTATCCAGTGATATTTTCCAACCATAAGTAGTAGTACTCACTCCTGTTTAAACTTTGGAATTTTTGTCAATAATATGTATAAAATTAAGAGTGATTGCAAGAATTTTATGACGTGATTTCTTGAATAAAAGAAATA]
consensusID : consensus_9443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 472 fasta sequence
[ACGAGGATGGCTGTAGAATAATGCAAAATAGTTCAGATCTGCCCTCAATTTCATTCAGAACTATGGAAAAGCAACAGAAAACAGATTGTGGCACCATTATTTTTGTCAGCGTAAATTTGCCAGTGTTCTTG-GCATAGAAACGAGCTGTG-ACGATACAGGTGCAGCTGTTATAGAAACATCAGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGGTGTATTACCCTCCGTAGCAGC-TGAACTTCACAAAG-AACACATTGAATCAG-TTGTAAATACTGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAAACCAGGTATGCCATTATCTCTTAAGATTGGAGTTAGTTTCGCTAAATCTTTAGCAAGTCGATTGAAGATTCCTATCATACCGATTGATCATATGGAGGCTCATGCACTGACA]
[+] EMBL CD083867 [ACGAGGATGGCTGTAGAATAATGCAAAATAGTTCAGATCTGCCCTCAATTTCATTCAGAACTATGGAAAAGCAACAGAAAACAGATTGTGGCACCATTATTTTTGTCAGCGTAAATTTGCCAGTGTTCTTG GCATAGAAACGAGCTGTG ACGATACAGGTGCAGCTGTTATAGAAACATCAGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGGTGTATTACCCTCCGTAGCAGC TGAACTTCACAAAG AACACATTGAATCAG TTGTAAATACTGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAAACCAGGTATGCCATTATCTCTTAAGATTGGAGTTAGTTTCGCTAAATCTTTAGCAA ]
[+] EMBL CD083947 [ GTTCTTGCGCATAGAAACGAGCTGTGTACGATACAGGTGCAGCTGTTATAGAAACATCAGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGGTGTATTACCCTCCGTAGCAGCATGAACTTCACAAAGTAAAACATTGAATCAGCTTGTAAATACTGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAAACCAGGTATGCCATTATCTCTAAAGATTGGAGTTAGTTCCGCTAAATCTTTAACAAGTCGATTGAAGATTCCTATCATACCGATTGATCATATGGAGGCTCATGCACTGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9443#0 ------------------------------------------------------------
consensus_9443#1 ACGAGGATGGCTGTAGAATAATGCAAAATAGTTCAGATCTGCCCTCAATTTCATTCAGAA 60
consensus_9443#0 --GTGGAAAAGCAACAGAAAACAGATTGTGGCACCATTATTTTTGTCAGCGTAAATTTGC 58
consensus_9443#1 CTATGGAAAAGCAACAGAAAACAGATTGTGGCACCATTATTTTTGTCAGCGTAAATTTGC 120
*********************************************************
consensus_9443#0 CAGTGTTCTTGGCATAGAAACGAGCTGTGACGATACAGGTGCAGCTGTTATAGAAACATC 118
consensus_9443#1 CAGTGTTCTTGGCATAGAAACGAGCTGTGACGATACAGGTGCAGCTGTTATAGAAACATC 180
************************************************************
consensus_9443#0 AGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGG 178
consensus_9443#1 AGGAAAATTACTTGGGGATTGTCTGTCTTCGCAATCAAGGATTAGTGTTATGTTGGGTGG 240
************************************************************
consensus_9443#0 TGTATTACCCTCCGTAGCAGCTGAACTTCACAAAGAAAACATTGAATCAGTTGTAAATAC 238
consensus_9443#1 TGTATTACCCTCCGTAGCAGCTGAACTTCACAAAGAACACATTGAATCAGTTGTAAATAC 300
************************************* **********************
consensus_9443#0 TGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAA 298
consensus_9443#1 TGCTATGGCCAAATCTAACATTGGACTTCGGGATTTAAATTTTGTCGCTGTTACAGTAAA 360
************************************************************
consensus_9443#0 ACCAGGT-TGAAATTTCCCTATATGATTCTCTTGATAAGTGGTGGTCACGGTATTTTGGG 357
consensus_9443#1 ACCAGGTATGCCATTATCTCTTAAGATTG---GAGTTAGTTTCGCTAA--ATCTTTAGCA 415
******* ** *** * ** **** * *** * * * * *** *
consensus_9443#0 TATTGTTCAAGGGTTAGAGGACTAC-GTTTTATTAGGTACAGCATTAGACGCCTCCCCAG 416
consensus_9443#1 AGTCGATTGAAGATTCCTATCATACCGATTGATCATATGGAGGCTCATGCACTGACA--- 472
* * * * * ** *** * ** ** * * ** * * * * *
consensus_9443#0 GTGATGTTCTTGATAAGCTTTCTAGGCGTCTAAAACTAAATCGTTTGTCAGATGAGTGTT 476
consensus_9443#1 ------------------------------------------------------------
consensus_9443#0 TGAAAGGCGTCGCAGGTGGTAAGGCTATCGAAATAATTGCAAAGACTTATAATGGTGATC 536
consensus_9443#1 ------------------------------------------------------------
consensus_9443#0 ATCAACGCTTCAATCTACCTTTACCGCGTTCACAATCTAAGGATTGTGATTTCTCATTTA 596
consensus_9443#1 ------------------------------------------------------------
consensus_9443#0 CTGGAATCCATGCGGCTGCAGAACAGTTGATCAATAAGTTGGAGTCTGAAAATCGTGGTA 656
consensus_9443#1 ------------------------------------------------------------
consensus_9443#0 GTGGATGCGCTTTATCGATCCAAGATATTGCTGATGTTTGTGCATCTGTACAGTTCTGTA 716
consensus_9443#1 ------------------------------------------------------------
consensus_9443#0 TGACAAGATTAATCTGTCGCCGTGTTCAGCGTGCTATTGAATATTGTTTGTTGAATACTG 776
consensus_9443#1 ------------------------------------------------------------
consensus_9443#0 ATTCCAGAGCCAGTGTAATTAGAAATCATCCTACAGCTTTGGTTGTTTCTGGTGGGGTTG 836
consensus_9443#1 ------------------------------------------------------------
consensus_9443#0 GTTCTAATTGTGTTATTCGTGCCGGTTTAACCGAGGTAGCTAATCATTATAATTTGAGAT 896
consensus_9443#1 ------------------------------------------------------------
consensus_9443#0 TTGTTGCTCCTCCACCAAGTCTATGTACTGATAATGGAATTATGATAGCATGGAATGGAG 956
consensus_9443#1 ------------------------------------------------------------
consensus_9443#0 TTTTACTTCAAAAAGAAAATTCTTCTCGTATTATAGAGGATATCTCTTCTGTTGATTTCT 1016
consensus_9443#1 ------------------------------------------------------------
consensus_9443#0 GTCCAAGATCTACATTTGGTGTTGACTGTCGGGAGGATGTGAAACAAGCTAACATATCCA 1076
consensus_9443#1 ------------------------------------------------------------
consensus_9443#0 TTGAACCAATTAAACTATCCAGTGATATTTTCCAACCATAAGTAGTAGTACTCACTCCTG 1136
consensus_9443#1 ------------------------------------------------------------
consensus_9443#0 TTTAAACTTTGGAATTTTTGTCAATAATATGTATAAAATTAAGAGTGATTGCAAGAATTT 1196
consensus_9443#1 ------------------------------------------------------------
consensus_9443#0 TATGACGTGATTTCTTGAATAAAAGAAATA 1226
consensus_9443#1 ------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||