These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1258 fasta sequence [AAACTCGAATTAGTAACGTCGCATGTAGTGATTTTTAATACCGATTGCTTCACTTGACTAAGTACATTCACCGTACAAAAAGCTTTATGCGATGGATAACTACCATTCATTGTTACCGATTTTTGCAGCAGTTTTCGCGGCATGGAGTATTTTACTCGGAATGGCCTTCCATCAAATTGATGAAGGTCATGTTGGTGTCTATTACCGTGGTGGTGCTCTACTTTCTCAGACCAACGGACCCGGTTATCATCTGATGATTCCCATCATAACCACATACAAACCTGTTCAGATTACTTTGCAAACCGATGAAGTAAAGAATGTTCCTTGTGGTACAAGTGGTGGAGTTGTCATTTATTTTGATCGTGTTGAAGTGGTCAATTATTTGGCGCCTGAAAGTGTTCATGACATTGTCAAGAATTATACTGCTGATTATGACAAAACACTAATATACAATAAAATTCATCATGAACTAAACCAATTTTGTAGTATACATA-CTCTAC-AGAAGTGTACATTGAATTATTTGATCAAATAGATGAATTTTTAAAGCGAACATTGCAAGCAGATCTAGTTTTAATGGCTCCTGGTCTATATATTCAAGCGGTACGAGTTACTAAGCCTAAAATTCCTGAAGCAATTAGACGCAATTATGAAGCTATGGAAGCTGAAAAAACAAAACTACTAATTGCTGAACAACATCAGAAGTTAATTGAACGAGAAGCTGAAACTGAGCGTCGTCGTGCAATAATTGAGGCTGAGAAGTTGGCTGAGGTTTCTGCGATAGAATGGCGAGCTAAATTAGTTGCTCAAGAGCATGAACGAAAAATAAGTGAAGTTGCAGATGCTACACAACTAGCTCGATCTAAAGCGCTTACAGACGCAGAATATTATCGTGCCATGAAAGAGGCTGAAGCGAGCCATTTAAAGTTAACTCCAGCCTATTTGGAATTAGCAAAATACCAAGCCTTGGCACAAAACTCTAAAGTTTACTTTACTGGTGACCAAGGAAATCTTATTATGGATCTTTTGAATCAAATGTCTTCAAGTTTGTCTAGGTCGAATGCGTCAACCAAAGATCAGGTCACATCTTCATTTGTGTAGCATTTCTTCGTCTTTTTAGTAATTGTACTATCTAAATAGTTTTATATTTCATTCAAAGTTGTCTCTTTATGTACATTTTTGTGATATTGTACAACGAACCAGAAACTTTTTTATCTGTTAGTTCTTTTTTTTTATACACACCGACTACATAATGTATGCT] [+] EMBL AI976105 [AAACTCGAATTAGTAACGTCGCATGTAGTGATTTTTAATACCGATTGCTTCACTTGACTAAGTACATTCACCGTACAAAAAGCTTTATGCGATGGATAACTACCATTCATTGTTACCGATTTTTGCAGCAGTTTTCGCGGCATGGAGTATTTTACTCGGAATGGCCTTCCATCAAATTGATGAAGGTCATGTTGGTGTCTATTACCGTGGTGGTGCTCTACTTTCTCAGACCAACGGACCCGGTTATCATCTGATGATTCCCATCATAACCACATACAAACCTGTTCAGATTACTTTGCAAACCGATGAAGTAAAGAATGTTCCTTGTGGTACAAGTGGTGGAGTTGTCATTTATTTTGATCGTGTTGAAGTGGTCAATTATTTGGCGCCTGAAAGTGTTCATGACATTGTCAAGAATTATACTGCTGATTATGACAAAACACTAATATACAATAAAATTCATCATGAACTAAACCAATTTTGTAGTATACATACCTCTAC AGAAGTGTACATTGAATTATTTGATCAAATAGATGAATTTTTAAAGCGAACATTGCAAGCAGATCTAGTTTTAATGGCTCCTGG ] [+] EMBL CD083110 [ AGAATGTTCCTTGTGGTACAAGTGGTGGAGTTGTCATTTATTTTGATCGTGTTGAAGTGGTCAATTATTTGGCGCCTGAAAGTGTTCATGACATTGTCAAGAATTATACTGCTGATTATGACAAAACACTAATATACAATAAAATTCATCATGAACTAAACCAATTTTGTAGTATACATA CTCTACAAGAAGTGTACATTGAATTATTTGATCAAATAGATGAATTTTTAAAGCGAACATTGCAAGCAGATCTAGTTTTAATGGCTCCTGGTCTATATATTCAAGCGGTACGAGTTACTAAGCCTAAAATTCCTGAAGCAATTAGACGCAATTATGAAGCTATGGAAGCTGAAAAAACAAAACTACTAATTGCTGAACAACATCAGAAGTTAATTGAACGAGAAGCTGAAACTGAGCGTCGTCGTGCAATAATTGAGGCTGAGAAGTTGGCTGAGGTTTCTGCGATAGAATGGCGAGCTAAATTAGTTGCTCAAGAGCATGAACGAAAAATAAGTGAAGTTGCAGATGCTACACAACTAGCTCGATCTANAGCGCTTACAGACGCAGAATATTATCGTGCCATGAAAGAAGCTGAAGCGAGCCATTTAAAG ] [+] EMBL CD079814 [ AGCAGATCT G TTTAATGGCTCCTGGTCTATATATTCAAGCGGTACGAGTTACTAAGCCTAAAATTCCTGAAGCAATTAGACGCAATTATGAAGCTATGGAAGCTGAAAAAACAAAACTACTAATTGCTGAACAACATCAGAAGTTAATTGAACGAGAAGCTGAAACTGAGCGTCGTCGTGCAATAATTGAGGCTGAGAAGTTGGCTGAGGTTTCTGCGATAGAATGGCGAGCTAAATTAGTTGCTCAAGAGCATGAACGAAAAATAAGTGAAGTTGCAGATGCTACACAACTAGCTCGATCTAAAGCGCTTACAGACGCAGAATATTATCGTGCCATGAAAGAGGCTGAAGCGAGCCATTTAAAGTTAACTCCAGCCTATTTGGAATTAGCAAAATACCAAGCCTTGGCACAAAACTCTAAAGTTTACTTTACTGGTGACCAAGGAAATCTTATTATGGATCTTTTGAATCAAATGTCTTCAAGTTTGTCTAGGTCGAATGCGTCAACCAAAGATCAGGTCACATCTTCATTTGTGTAGCATTTCTTCGTCTTTTTAGTAATTGTACTATCTAAATAGTTNTATATTTCATTCAAAGTTGTCTCTTTATGTACATTNTTGTGATATTGTACAACGAACCAGAAACTNTNTTATCTGTTAGTTCTTTNTTTTTATACACACCGACTACATAATGTATGCT] [-] EMBL CD077296 [ AGATCTAGTTTTAATGGCTCCTGGTCTATATATTCAAGCGGTACGAGTTACTAAGCCTAAAATTCCTGAAGCAATTAGACGCAATTATGAAGCTATGGAAGCTGAAAAAACAAAACTACTAATTGCTGAACAACATCAGAAGTTAATTGAACGAGAAGCTGAAACTGAGCGTCGTCGTGCAATAATTGAGGCTGAGAAGTTGGCTGAGGTTTCTGCGATAGAATGGCGAGCTAAATTAGTTGCTCAAGAGCATGAACGGAAAATAAGTGAAGTTGCAGATGCTACACAACTAGCTCGATCTAAAGCGCTTACAGACGCAGAATATTATCGTGCCATGAAAGAGGCTGAAGCGAGCCATTTAAAGTTAACCCCAGCCTATTTGGAATTAGCAAAATACCAAGCCTTGGCACAAAACTCTAAAGTTTACTTTACTGGTGACCAAGGAAATCTTATTATGGATCTTTTGAATCAAATGTCTTCAAGTTTGTCTAAGTCGAATGCGTCAACCAAAGATCAGGTCACATCTTCATTTGTGTAGCATTTCTTCGTCTTTTTAGTAATTGTACTATCTAAATAGTTTTATATTTCATTCAAAGTTGTCTCTTTATGTACATTTTTGTGATATTGTACAACGAACCGGAAATTTT ] [-] EMBL CD076684 [ CAATTAGACGCAATTATGAAGCTATGGAAGCTGAAAAAACAAAACTACTAATTGCTGAACAACATCAGAAGTTAATTGAACGAGAAGCTGAAACTGAGCGTCGTCGTGCAATAATTGAGGCTGAGAAGTTGGCTGAGGTTTCTGCGATAGAATGGCGAGCTAAATTAGTTGCTCAAGAGCATGAACGAAAAATAAGTGAAGTTGCAGATGCTACACAACTAGCTCGATCTAAAGCGCTTACAGACGCAGAATATTATCGTGCCATGAAAGAGGCTGAAGCGAGCCATTTAAAGTTAACTCCAGCCTATTTGGAATTAGCAAAATACCAAGCCTTGGCACAAAACTCTAAAGTTTACTTTACTGGTGACCAAGGAAATCTTATTATGGATCTTTTGAATCAAATGTCTTCAAGTTTGTCTAGGTCGAATGCGTCAACCAAAGATCAGGTCACATCTTCATTTGTGTAGCATTTCTTCGTCTTTTTAGTAATTGTACTATCTAAATAGTTTTATATTTCATTCAAAGTTGTCTCTTTATGTACATTTTTGTGATATTGTACAACGAACCAGA ] [-] EMBL CD074073 [ ACGCAATTATGAAGCTATGGAAGCTGAAAAAACAAAACTACTAATTGCTGAACAACATCAGAAGTTAATTGAACGAGAAGCTGAAACTGAGCGTCGTCGTGCAATAATTGAGGCTGAGAAGTTGGCTGAGGTTTCTGCGATAGAATGGCGAGCTAAATTAGTTGCTCAAGAGCATGAACGAAAAATAAGTGAAGTTGCAGATGCTACACAACTAGCTCGATTTAAAGCGCTTACAGACGCAGAATATTATCGTGCCATGAAAGAGGCTGAAGCGAGCCATTTAAAGTTAACTCCAGCCTATTTGGAATTAGCAAAATACCAAGCCTTGGCACAAAACTCTAAAGTTTACTTTACTGGTGACCAAGGAAATCTTATTATGGATCTTTTGAATCAAATGTCTTCAAGTTTGTTTAGGTCGAATGCGTCAACCAAAGATCAGGTCACATCTTCATTTGTGTAGCATTTCTTCGTCTTTTTAGTAATTGTACTATCTAAATAGTTTTATATTTCATTCAAAGTTGTCTCTTTATGTACATTTTTGTGATATTGTACAACGAACCAGAAACTTTTTTATCTGTTAGTTCTTTTTTTTTATACACACCGACTACATAATGTATGCT] [-] EMBL CD073135 [ TGGCTGAGGTTTCTGCGATAGAATGGCGAGCTAAATTAGTTGCTCAAGAGCATGAACGAAAAATAAGTGAAGTTGCAGATGCTACACAACTAGCTCGATTTAAAGCGCTTACAGACGCAGAATATTATCGTGCCATGAAAGAGGCTGAAGCGAGCCATTTAAAGTTAACTCCAGCCTATTTGGAATTAGCAAAATACCAAGCCTTGGCACAAAACTCTAAAGTTTACTTTACTGGTGACCAAGGAAATCTTATTATGGATCTTTTGAATCAAATGTCTTCAAGTTTGTCTAGGTCGAATGCGTCAACCAAAGATCAGGTCACATCTTCATTTGTGTAGCATTTCTTCGTCTTTTTAGTAATTGTACTATCTAAATAGTTTTATATTTCATTCAAAGTTGTCTCTTTATGTACATTTTTGTGATATTGTACAACGAACCAGAAACTTTTTTATCTGTTAGTTCTTTTTTTTTATACACAC ] consensusID : consensus_9454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [TAAAAGGAGACGGTGGAGCCCTTTGAAAAGCTCTGACTTTTAAACCGTACCTTGCTGTTTCCGTTCTTAGACGTTATTGCTTCACTTGACTAAGTACATTCACCGTACAAAAAGCTTTATGCGATGGATAACTACCATTCATTGTTACCGATTTTTGCAGCAGTTTTCGCGGCATGGAGTATTTTACTCGGAATGGCCTTCCATCAAATTGATGAAGGTCATGTTGGTGTCTATTACCGTGGTGGTGCTCTACTTTCTCAGACCAACGGACCCGGTTATCATCTGATGATTCCCATCATAACCACATACAAACCTGTTCAGATTACTTTGCAAACCGATGAAGTAAAGAATGTTCCTTGTGGTACAAGTGGTGGAGTTGTCATTTATTTTGATCGTGTTGAAGTGGTCAATTATTTGGCGCCTGAAAGTGTTCATGACATTGTCAAGAATTATACTGCTGATTATGACAAAACACTAATATACAATAAAATTCATCATGAACTAAACCAATTTTGTAGTATACATACTCTACAAGAAGTGTACATTGAATTATTTGATCAAATAGATGAATTTTTAAAGCGAACATTGNCAGCAGATCTAGTTTTA] [+] EMBL CD078671 [TAAAAGGAGACGGTGGAGCCCTTTGAAAAGCTCTGACTTTTAAACCGTACCTTGCTGTTTCCGTTCTTAGACGTTATTGCTTCACTTGACTAAGTACATTCACCGTACAAAAAGCTTTATGCGATGGATAACTACCATTCATTGTTACCGATTTTTGCAGCAGTTTTCGCGGCATGGAGTATTTTACTCGGAATGGCCTTCCATCAAATTGATGAAGGTCATGTTGGTGTCTATTACCGTGGTGGTGCTCTACTTTCTCAGACCAACGGACCCGGTTATCATCTGATGATTCCCATCATAACCACATACAAACCTGTTCAGATTACTTTGCAAACCGATGAAGTAAAGAATGTTCCTTGTGGTACAAGTGGTGGAGTTGTCATTTATTTTGATCGTGTTGAAGTGGTCAATTATTTGGCGCCTGAAAGTGTTCATGACATTGTCAAGAATTATACTGCTGATTATGACAAAACACTAATATACAATAAAATTCATCATGAACTAAACCAATTTTGTAGTATACATACTCTACAAGAAGTGTACATTGAATTATTTGATCAAATAGATGAATTTTTAAAGCGAACATTGNCAGCAGATCTAGTTTTA] consensusID : consensus_9454#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 122 fasta sequence [ATGAAGCTATGGAAGCTGAAAAAACAAAACTACTAATTGCTGAACAACATCAGAAGTTAATTGAACGAGAAGCTGAAACTGAGCGTCGTCGTGCAATAATTGGTTAGTTTATGCTTTTTTTT] [-] EMBL CD071678 [ATGAAGCTATGGAAGCTGAAAAAACAAAACTACTAATTGCTGAACAACATCAGAAGTTAATTGAACGAGAAGCTGAAACTGAGCGTCGTCGTGCAATAATTGGTTAGTTTATGCTTTTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9454#0 ---------------------------AAACTCGAATTAGTAA--CGTCGCATGTAGTG- 30 consensus_9454#1 TAAAAGGAGACGGTGGAGCCCTTTGAAAAGCTCTGACTTTTAAACCGTACCTTGCTGTTT 60 consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 --ATTTTTAATACCGATTGCTTCACTTGACTAAGTACATTCACCGTACAAAAAGCTTTAT 88 consensus_9454#1 CCGTTCTTAGACGTTATTGCTTCACTTGACTAAGTACATTCACCGTACAAAAAGCTTTAT 120 consensus_9454#2 ------------------------------------------------ATGAAGCTATGG 12 * ***** * consensus_9454#0 GCGATGGATAACTACCATTCATTGTTACCGATTTTTG-CAGCAGTTTTCGCGGCATGGAG 147 consensus_9454#1 GCGATGGATAACTACCATTCATTGTTACCGATTTTTG-CAGCAGTTTTCGCGGCATGGAG 179 consensus_9454#2 AAGCTGAAAAAACAAAACTACTAATTGCTGAACAACATCAGAAGTTAATTGAACGAGAAG 72 * ** * ** * * * * ** * ** *** **** * * ** consensus_9454#0 TATTTTACTCGGAATGGCCTTCCATCAAATTGATGAAGGTCATGTTGGTGTCTATTACCG 207 consensus_9454#1 TATTTTACTCGGAATGGCCTTCCATCAAATTGATGAAGGTCATGTTGGTGTCTATTACCG 239 consensus_9454#2 C-TGAAACTGAGCGTCGTCGTGCAATAATTGGTT--AGTTTATGCTTTTTTTT------- 122 * *** * * * * * ** ** * * * ** * *** * * * * consensus_9454#0 TGGTGGTGCTCTACTTTCTCAGACCAACGGACCCGGTTATCATCTGATGATTCCCATCAT 267 consensus_9454#1 TGGTGGTGCTCTACTTTCTCAGACCAACGGACCCGGTTATCATCTGATGATTCCCATCAT 299 consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 AACCACATACAAACCTGTTCAGATTACTTTGCAAACCGATGAAGTAAAGAATGTTCCTTG 327 consensus_9454#1 AACCACATACAAACCTGTTCAGATTACTTTGCAAACCGATGAAGTAAAGAATGTTCCTTG 359 consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 TGGTACAAGTGGTGGAGTTGTCATTTATTTTGATCGTGTTGAAGTGGTCAATTATTTGGC 387 consensus_9454#1 TGGTACAAGTGGTGGAGTTGTCATTTATTTTGATCGTGTTGAAGTGGTCAATTATTTGGC 419 consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 GCCTGAAAGTGTTCATGACATTGTCAAGAATTATACTGCTGATTATGACAAAACACTAAT 447 consensus_9454#1 GCCTGAAAGTGTTCATGACATTGTCAAGAATTATACTGCTGATTATGACAAAACACTAAT 479 consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 ATACAATAAAATTCATCATGAACTAAACCAATTTTGTAGTATACATACTCTACA-GAAGT 506 consensus_9454#1 ATACAATAAAATTCATCATGAACTAAACCAATTTTGTAGTATACATACTCTACAAGAAGT 539 consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 GTACATTGAATTATTTGATCAAATAGATGAATTTTTAAAGCGAACATTGCAAGCAGATCT 566 consensus_9454#1 GTACATTGAATTATTTGATCAAATAGATGAATTTTTAAAGCGAACATTGNCAGCAGATCT 599 consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 AGTTTTAATGGCTCCTGGTCTATATATTCAAGCGGTACGAGTTACTAAGCCTAAAATTCC 626 consensus_9454#1 AGTTTTA----------------------------------------------------- 606 consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 TGAAGCAATTAGACGCAATTATGAAGCTATGGAAGCTGAAAAAACAAAACTACTAATTGC 686 consensus_9454#1 ------------------------------------------------------------ consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 TGAACAACATCAGAAGTTAATTGAACGAGAAGCTGAAACTGAGCGTCGTCGTGCAATAAT 746 consensus_9454#1 ------------------------------------------------------------ consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 TGAGGCTGAGAAGTTGGCTGAGGTTTCTGCGATAGAATGGCGAGCTAAATTAGTTGCTCA 806 consensus_9454#1 ------------------------------------------------------------ consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 AGAGCATGAACGAAAAATAAGTGAAGTTGCAGATGCTACACAACTAGCTCGATCTAAAGC 866 consensus_9454#1 ------------------------------------------------------------ consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 GCTTACAGACGCAGAATATTATCGTGCCATGAAAGAGGCTGAAGCGAGCCATTTAAAGTT 926 consensus_9454#1 ------------------------------------------------------------ consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 AACTCCAGCCTATTTGGAATTAGCAAAATACCAAGCCTTGGCACAAAACTCTAAAGTTTA 986 consensus_9454#1 ------------------------------------------------------------ consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 CTTTACTGGTGACCAAGGAAATCTTATTATGGATCTTTTGAATCAAATGTCTTCAAGTTT 1046 consensus_9454#1 ------------------------------------------------------------ consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 GTCTAGGTCGAATGCGTCAACCAAAGATCAGGTCACATCTTCATTTGTGTAGCATTTCTT 1106 consensus_9454#1 ------------------------------------------------------------ consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 CGTCTTTTTAGTAATTGTACTATCTAAATAGTTTTATATTTCATTCAAAGTTGTCTCTTT 1166 consensus_9454#1 ------------------------------------------------------------ consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 ATGTACATTTTTGTGATATTGTACAACGAACCAGAAACTTTTTTATCTGTTAGTTCTTTT 1226 consensus_9454#1 ------------------------------------------------------------ consensus_9454#2 ------------------------------------------------------------ consensus_9454#0 TTTTTATACACACCGACTACATAATGTATGCT 1258 consensus_9454#1 -------------------------------- consensus_9454#2 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||