cluster # 9467

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Schistosoma mansoni
cluster # 9467 cluster # 9467 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9467#0 length = 884 sequences # 4

consensus_9467#1 length = 709 sequences # 5

consensusID : consensus_9467#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 884
fasta sequence

                              [GGTTTTTTTTTAAATAGCAGTACATGAATTCATTTTGAAGAAAAAGAATTTGTAGACAATCAATAAAGAAGGTAAATGTAGCAATGAAAGAATGGAACAATTATATACACAATTTTTTTTGGTTTTGATAAAAGAAGAAAGACTTTTTAATTCACCCATTACTGATGTAAAAAAAAACGAGCAAACAATCACTAGTTCATCATGGATGATGTAACAATTATTGAATAAACTAAAAAATATTAGTGAAAGACAATACAATAATTGACAATCATCCACAATTATAATCATGTACTGTACAAAAAGAGAAGGAGAATTACATTACAACATTTTAACTCTCACATACCAACAAACTATTATTATTGCATTATTTATCCATAGTACTAAGAGTTGATTGAATATTAATTGCTTTTTTATTCTTTTTCGTAGATAATGCAGCTATAATCCATTTCATATTGATAAGCATCATTTTTAAAGCTTTAGTCCAATTTTCTTCAGAATTCCCATTCCATTTGATCGAATAGATTTGACCATCAGGATCTTGTAATTTTCCCTTATCTTTAATGCGAAAAGGCAATTGCATATTGGATGTATGTTCTATAATTTGTTGAGCTTGATTTAAACAGTCTAAAAAATTTATCATAGCTGTATCGAATTTGCCAGCGCTCAATAATCGCATGCCACCAGTAGTATAATAAAGAGGAAATTCTTTCGATATCGATAGTTGAACCATTTTTGACTGGCTACCCATTGGCACAATACGATGATTTTGAAAAATGTAATTAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCACCTCGTGCCG]

[+] EMBL CD084209             [GGTTTTTTTTTAAATAGCAGTACATGAATTCATTTTGAAGAAAAAGAATTTGTAGACAATCAATAAAGAAGGTAAATGTAGCAATGAAAGAATGGAACAATTATATACACAATTTTTTTTGGTTTTGATAAAAGAAGAAAGACTTTTTAATTCACCCATTACTGATGTAAAAAAAAACGAGCAAACAATCACTAGTTCATCATGGATGATGTAACAATTATTGAATAAACTAAAAAATATTAGTGAAAGACAATACAATAATTGACAATCATCCACAATTATAATCATGTACTGTACAAAAAGAGAAGGAGAATTACATTACAACATTTTAACTCTCACATACCAACAAACTATTATTATTGCATTATTTATCCATAGTACTAAGAGTTGATTGAATATTAATTGCTTTTTTATTCTTTTTCGTAGATAATGCAGCTATAATCCATTTCATATTGATAAGCATCATTTTTAAAGCTTTAGTCCAATTTTCTTCAGAATTCCCATTCCATTTGATCGAAT                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL SMW756               [                                                              ATAAAGAAGGTAAATGTAGCAATGAAAGAATGGAACAATTATATACACAATTTTTTTTGGTTTTGATAAAAGAAGAAAGACTTTTTAATTCACCCATTACTGATGTAAAAAAAAACGAGCAAACAATCACTAGTTCATCATGGATGATGTAACAATTATTGAATAAACTAAAAAATATTAGTGAAAGACAATACAATAATTGACAATCATCCACAATTATAATCATGTACTGTACAAAAAGAGAAGGAGAATTACATTACAACATTTTAACTCTCACATACCAACAAACTATTATTATTGCATTATTTATCCATAGTACTAAGAGTTGATTGAATATTAATGGCTTTTTTATTCTTTTTCGTAGATAATGCAGCTATAATCCATTTCATATTGATAAGCATCATTTTTAAAGCTTTAGTCCAATT                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD073849             [                                                                                                                                                                                            TCACTAGTTCATCATGGATGATGTAACAATTATTGAATAAACTAAAAAATATTAGTGAAAGACAATACAATAATTGACAATCATCCACAATTATAATCATGTCCTGTACAAAAAGAGAAGGAGAATTACATTACAACATTTTACCTCTCACATACCAACAAACTATTATTATTGCATTATTTATCCATAGTACTAAGAGTTGATTGAATATTAATTGCTTTTTTATTCTTTTTCGTAGATAATGCAGCTATAATCCATTTCATATTGATAAGCATCATTTTTAAAGCTTTAGTCCAATTNTCTTCAGAA                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD083922             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGATAAGCATCATTTTTAAAGCTTTAGTCCAATTTTCTTCAGAATTCCCATTCCATTTGATCGAATAGATTTGACCATCAGGATCTTGTAATTTTCCCTTATCTTTAATGCGAAAAGGCAATTGCATATTGGATGTATGTTCTATAATTTGTTGAGCTTGATTTAAACAGTCTAAAAAATTTATCATAGCTGTATCGAATTTGCCAGCGCTCAATAATCGCATGCCACCAGTAGTATAATAAAGAGGAAATTCTTTCGATATCGATAGTTGAACCATTTTTGACTGGCTACCCATTGGCACAATACGATGATTTTGAAAAATGTAATTAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCACCTCGTGCCG]




>consensus_9467#0
GGTTTTTTTTTAAATAGCAGTACATGAATTCATTTTGAAGAAAAAGAATTTGTAGACAAT
CAATAAAGAAGGTAAATGTAGCAATGAAAGAATGGAACAATTATATACACAATTTTTTTT
GGTTTTGATAAAAGAAGAAAGACTTTTTAATTCACCCATTACTGATGTAAAAAAAAACGA
GCAAACAATCACTAGTTCATCATGGATGATGTAACAATTATTGAATAAACTAAAAAATAT
TAGTGAAAGACAATACAATAATTGACAATCATCCACAATTATAATCATGTACTGTACAAA
AAGAGAAGGAGAATTACATTACAACATTTTAACTCTCACATACCAACAAACTATTATTAT
TGCATTATTTATCCATAGTACTAAGAGTTGATTGAATATTAATTGCTTTTTTATTCTTTT
TCGTAGATAATGCAGCTATAATCCATTTCATATTGATAAGCATCATTTTTAAAGCTTTAG
TCCAATTTTCTTCAGAATTCCCATTCCATTTGATCGAATAGATTTGACCATCAGGATCTT
GTAATTTTCCCTTATCTTTAATGCGAAAAGGCAATTGCATATTGGATGTATGTTCTATAA
TTTGTTGAGCTTGATTTAAACAGTCTAAAAAATTTATCATAGCTGTATCGAATTTGCCAG
CGCTCAATAATCGCATGCCACCAGTAGTATAATAAAGAGGAAATTCTTTCGATATCGATA
GTTGAACCATTTTTGACTGGCTACCCATTGGCACAATACGATGATTTTGAAAAATGTAAT
TAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATGACCCCAAGCTGCATTGATCTC
TCCCCAACCAACAGGACGATTAGGCAAACGACCACCTCGTGCCG

consensusID : consensus_9467#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 709
fasta sequence

                              [TTAAACAGTCTAAANAATTTATCATAGCTGTATCGAATTTGCCAGCGCTCAATAATCGCATGCCACCAGTAGTATAATAAAGAGGAAATTCTTTCGATATCGATAGTTGAACCATTTTTGACTGGCTACCCATTGGCACAATACGATGATTTTGAAAAATGTAATTAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATTGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCAAGATGTAATCCATTAATTACACCAATATGACCATCGTACCATATAGGAAAAGCAATATTAAGTACATTCGTACGCTGTAATCTATGTAAATGACTTCGAGCATAGCTTAGTCGAGATTCTAAGCACTGCATTTCTTCTTCTGCTTCCATTAAGGCCAGTTTTTGATCG-TTATA-TTGAGTTGTAGCTCGATCTAATTC-TTCTGTACGCTTTTCTAG-TTCAACTGTATCTTGAATTATTTGTTTATCTAATTTGTCATTTTCAATTAATAATTCATTTAAGTTAGATTGCAAAGCATTCAATGTTTGTTCAAGTTCACTTACATTTGTACCATATTTTTTACGATTTGATGTATAATTTTTAATTTTTTTATCTATTTTCACAGCATCACTACTATCACCCATGTCGTTATCGTCGTCGTCGTCGTCGCCTCGTGCCAAATTNTTGGCTGG]

[-] EMBL CD079588             [TTAAACAGTCTAAANAATTTATCATAGCTGTATCGAATTTGCCAGCGCTCAATAATCGCATGCCACCAGTAGTATAATAAAGAGGAAATTCTTTCGATATCGATAGTTGAACCATTTTTGACTGGCTACCCATTGGCACAATACGATGATTTTGAAAAATGTAATTAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATTGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCAAGATGTAATCCATTAATTACACCAATATGACCATCGTACCATATAGGAAAAGCAATATTAAGTACATTCGTACGCTGTAATCTATGTAAATGACTTCGAGCATAGCTTAGTCGAGATTCTAAGCACTGCATTTCTTCTTCTGCTTCCATTAAGGCCAGTTTTTGATCG TTATA TTGAGTTGTAGCTCGATCTAATTC TTCTGTACGCTTTTCTAG TTCAACTGTATCTTGAATTATTTGTTTATCTAATTTGTCATTTTCAATTAATAATTCATTTAAGTTAGATTGCAAAGCATTCAATGTTTGTTCAAGTTCACTTACATTTGTACCATATTTTTTACGATTTGATGTATAATTTTTAATTTTTTTATCTATTTTCACAGCATCACTACTATCACCCATGTCGTTATCGTCGTCGTCGTCGTCGCCTCGTGCCAAATTNTTGGCTGG]
[-] EMBL CD144536             [                                                                                                                                                actaATTTTGAAAAATGTAATTAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATTGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCAAGATGTAATCCATTAATTACACCAATATGACCATCGTACCATATAGGAAAAGCAATATTAAGTACATTCGTACGCTGTAATCTATGTAAATGACTTCGAGCATAGCTTAGTCGAGATTCTAAGCACTGCATTTC                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD071772             [                                                                                                                                                    ATTTTGAAAAATGTAATTAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATTGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCAAGATGTAATCCATTAATTACACCAATATGACCATCGTACCATATAGGAAAAGCAATATTAAGTACATTCGTACGCTGTAATCTATGTAAATGACTTCGAGCATAGCTTAGTCGAGATTCTAAGCACTGCATTTC                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD201106             [                                                                                                                                                                                                               CCCAAGCTGCATTGATCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCAAGATGTAATCCATTAATTACACCAATATGACCATCGTACCATATAGGAAAAGCAATATTAAGTACATTCGTACGCTGTAATCTATGTAAATGACTTCGAGCATAGCTTAGTCGAGATTCTAAGCACTGCATTT                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL SM028                [                                                                                                                                                                                                                                                                                                                                                                                                     ATTTCTTCTTCGTCTTCCATTAAGGCCAGTTTTTGATCGTTTATATTTGAGTTGTAGCTCGATCTAATTCTTTCTGTACGCTTTTCTAGTTTCAACTGTATCTTGAATTATTTGTTTATCTAATTTGTCATTTTCAATTAATAATTCATTTAAGTTAGATTGCAAAGCATTCAATGTTTGTTCAAGTTCA                                                                                                                                      ]




>consensus_9467#1
TTAAACAGTCTAAANAATTTATCATAGCTGTATCGAATTTGCCAGCGCTCAATAATCGCA
TGCCACCAGTAGTATAATAAAGAGGAAATTCTTTCGATATCGATAGTTGAACCATTTTTG
ACTGGCTACCCATTGGCACAATACGATGATTTTGAAAAATGTAATTAAGTTTCTTCCCGA
TGCACTGTAATAATAAAGCACATTGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAG
GACGATTAGGCAAACGACCAAGATGTAATCCATTAATTACACCAATATGACCATCGTACC
ATATAGGAAAAGCAATATTAAGTACATTCGTACGCTGTAATCTATGTAAATGACTTCGAG
CATAGCTTAGTCGAGATTCTAAGCACTGCATTTCTTCTTCTGCTTCCATTAAGGCCAGTT
TTTGATCGTTATATTGAGTTGTAGCTCGATCTAATTCTTCTGTACGCTTTTCTAGTTCAA
CTGTATCTTGAATTATTTGTTTATCTAATTTGTCATTTTCAATTAATAATTCATTTAAGT
TAGATTGCAAAGCATTCAATGTTTGTTCAAGTTCACTTACATTTGTACCATATTTTTTAC
GATTTGATGTATAATTTTTAATTTTTTTATCTATTTTCACAGCATCACTACTATCACCCA
TGTCGTTATCGTCGTCGTCGTCGTCGCCTCGTGCCAAATTNTTGGCTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9467#0      GGTTTTTTTTTAAATAGCAGTACATGAATTCATTTTGAAGAAAAAGAATTTGTAGACAAT 60
consensus_9467#1      ---------TTAAACAGT--CTAAANAATTTATCATAGCTGTATCGAATTTGCCAGCGCT 49
                               ***** **      *  **** **  *      *  *******    *  *

consensus_9467#0      CAATAAAGAAGGTAAATGTAGCAATGAAAGAATGGAACAATTATATACACAATTTTTTTT 120
consensus_9467#1      CAATAA------------TCGCATGCCACCAGTAGTATAATAAAGAGG--AAATTCTTTC 95
                      ******            * ***    *  * * * * *** *       ** ** *** 

consensus_9467#0      GGTTTTGATAAAAGAAGAAAGACTTTTTAATTCACCCATTACTGATGTAAAAAAAAACGA 180
consensus_9467#1      GATATCGATAGTTGAACCA----TTTTTGACTGGCTACCCATTGGCACAATACGA----- 146
                      * * * ****   ***  *    ***** * *  *     * **    ** *  *     

consensus_9467#0      GCAAACAATCACTAGTTCATCATGGATGATGTAACAATTATTGAATAAACTAAAAAATAT 240
consensus_9467#1      ----------------TGATTTTGAAAAATGTAATTAAGTTTCTTCCCGATGCACTGTAA 190
                                      * **  ** *  ******  *   **        *  *   ** 

consensus_9467#0      TAGTGAAAGACAATACAATAATTGACAATCATCCACAATTATAATCATGTACTGTACAAA 300
consensus_9467#1      TAATAAAGCACA---------TTGACCCCAAGCTGCATTGATCTCTCCCCAACCAACAGG 241
                      ** * **  ***         *****    * *  ** * **        *    ***  

consensus_9467#0      AAGAGAAGGAGAATTACATTACAACATTTTAACTCTCACATACCAACAAACTATTATTAT 360
consensus_9467#1      ACGATTAGGCAAACGAC----CAAGATGTAATCCATTA-ATTACACCAA--TATGACCAT 294
                      * **  ***  **  **    *** ** * * *  * * **  ** ***  *** *  **

consensus_9467#0      TGCATTATTTATCCATAGTACTAAGAGTTGATTGAATATTAATTGCTTTTTTATTCTTTT 420
consensus_9467#1      CGTACCATATAGGAAAAGCAATA--------TTAAGTAC--ATTCGTACGCTGTAATCTA 344
                       * *  ** **   * ** * **        ** * **   ***  *    * *  * * 

consensus_9467#0      TCGTAGATAA-TGCAGCTATAATCCATTTCATATTGATAAGCATCATTTTTAAAGCTTTA 479
consensus_9467#1      T-GTAAATGACTTCGAGCATAGCTTAGTCGAGATTC-TAAGCACTGCATTT-----CTTC 397
                      * *** ** * * *    ***    * *  * ***  ******     ***      ** 

consensus_9467#0      GTCCAATTTTCTTCAGAATTCCCATTCCATTTGATCGAATAGATTTGACCATCAGGATCT 539
consensus_9467#1      TTCTGCTTCCATTAAGG----CCAGTT--TTTGATCGT-TATATTGAGTTGT-AGCTCGA 449
                       **   **   ** **     *** *   ********  ** ***      * **     

consensus_9467#0      TGTAATTTTCCCTTATCTTTAATGCGAAAAGGCAATTGCATATTGGAT-GTATGTTC-TA 597
consensus_9467#1      TCTAATTCTTCTGTACGCTT----TTCTAGTTCAACTGTATCTTGAATTATTTGTTTATC 505
                      * ***** * *  **   **        *   *** ** ** *** **  * ****  * 

consensus_9467#0      TAATTTGTTGAGCTTGATTTAAACAGTCTAAAAAATTTATCATAGCTGTATCGAATTTGC 657
consensus_9467#1      TAATTTGTCATTTTCAATT-----------AATAATTCATTTAAGTTAGATTGCAA---- 550
                      ********     *  ***           ** **** **   ** *  ** * *     

consensus_9467#0      CAGCGCTCAATAATCGCATGCCACCAGTAGTATAATAAAGAGGAAATTCTTTCGATATCG 717
consensus_9467#1      -AGCATTCAATGTTTGTTCAAGTTCACT--TACATTTGTACCATATTTTTTACGAT---- 603
                       ***  *****  * *        ** *  ** * *        * ** ** ****    

consensus_9467#0      ATAGTTGAACCATTTTTGACTGGCT-ACCCATTGGCACAATACGATGATTTTGAAAAATG 776
consensus_9467#1      -TTGATGTATAATTTTTAATTTTTTTATCTATTTTCACAGCATCACTACTATCACCCATG 662
                       * * ** *  ****** * *   * * * ***  ****  *  *  * * * *   ***

consensus_9467#0      TAATTAAGTTTCTTCCCGATGCACTGTAATAATAAAGCACATGACCCCAAGCTGCATTGA 836
consensus_9467#1      TCGTTATCGTCGTCGTCGTCGTCGCCTCGTGCCAAATTNT-TGGCTGG------------ 709
                      *  ***   *  *   **  *     *  *   ***     ** *               

consensus_9467#0      TCTCTCCCCAACCAACAGGACGATTAGGCAAACGACCACCTCGTGCCG 884
consensus_9467#1      ------------------------------------------------