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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1302 fasta sequence
[GAACAATCTGTCCTTGCATATTCATGATAGCAACTGTATTAGAACGACTAGCTACAACAAATTGATCTGTATTACGAGGCATTAAATGAACTGAATGAATTGATACTTCATGACCAACTAGACCAGATATTGCCTTAAATGTATTTGTACACTCTCCTGAACGAATTGACCATATGCGTACAGAACCATCAGCGCTTCCACTTATTATATTGTGTCCATCAGGTAAAAATGCTACAGAATTTACAACACCTGTATGACCAGTAAATTCTTTAATAATTTTACACGATTTCATTCCATGTATTCGAATGCTATGATCTAGACTAGCTGATAATATATGTGTATTATCTTTAGAGAATTGTATTGCTGTAACACCTTTAAGATGTGCTTTTTCTAAACGTTTTAAACATTGACCATTTTGTATACGCCAAATTTTAATTGTTCCCTCTTTAGCACCAGATGCTAACATTTCAGAATCACGACTAAATGTTAAACATAATACACTATCTTCCATCATCATAAATGTATCCTGAGCTTGATATTTTAGATCTTTTCTTAGCTTCCCAGTTGTAAAATTCCATACTTCAATGAAGCCATCAACTGAACCAGTCACTAAGAATTGACCATCTGGACTGAACCT-GGCACATTCGACATGACACTTTTGAACTACTCGTATAACAGTAGACAATTTAGTAGGTGGTTTTTCTTCTTCTTGTTCACGTACTGCAGCTTTACCACGAAATACATCAATTGCTGTACCAGGTGGTAACAATCCTTGATGTTGTTGCCATTTAAGCGCCTGGCTAAGTAATGCCAGCAAACGTGACGGAGCTACAACGCTTA-CTTCTTCAGACAATGAAGTAGCCAGTGCTTGACGACGTTTATCTTTCGATTGACCATCTGAATAAGCCTCTCTTGGATCAAAATATGACCTATTCAAAAGATTATCTAAATGTGTATAACGATCAGGTTGTGTACGTTTCATAGTAATCATTGGTTCG--GTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTTTTGTTCTGGTAATTTTAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAATAATATC-GGATACAAAACTTTCTATAGATTCAACAGTATTCAATGATACTC-TTGTTTCTTCCTGTACTGTACGTAATGTTCGTAATAAATTACTTTCTTTTAAATACTGTTCTATTAAGCGGACTACATCAGCTGATTCGATTTCCGATATTCCATTAA]
[+] EMBL CD098437 [GAACAATCTGTCCTTGCATATTCATGATAGCAACTGTATTAGAACGACTAGCTACAACAAATTGATCTGTATTACGAGGCATTAAATGAACTGAATGAATTGATACTTCATGACCAACTAGACCAGATATTGCCTTAAATGTATTTGTACACTCTCCTGAACGAATTGACCATATGCGTACAGAACCATCAGCGCTTCCACTTATTATATTGTGTCCATCAGGTAAAAATGCTACAGAATTTACAACACCTGTATGACCAGTAAATTCTTTAATAATTTTACACGATTTCATTCCATGTATTCGAATGCTATGATCTAGACTAGCTGATAATATATGTGTATTATCTTTAGAGAATTGTATTGCTGTAACACCTTTAAGATGTGCTTTTTCTAAACGTTTTAAACATTGACCATTTTGTATACGCCAAATTTTAATTGTTCCCTCTTTAGC ]
[-] EMBL CD135364 [ TCTCCTGAACGAATTGACCATATGCGTACAGAACCATCAGCGCTTCCACTTATTATATTGTGTCCATCAGGTAAAAATGCTACAGAATTTACAACACCTGTATGACCAGTAAATTCTTTAATAATTTTACACGATTTCATTCCATGTATTCGAATGCTATGtagaggt ]
[-] EMBL CD132876 [ AATTTTACACGATTTCATTCCATGTATTCGAGTGCTATGATCTAGACTAGCTGATAATATATGTGTATTATCTTTAGAGAATTGTATTGCTGTAACACCTNTATGATGTGCTTTTTCTAAACGTTTTAAACATTGACCATTTTGTATACGCCAAATTTTAATTGTTCCATCTTTAGCACCAGATGCTAACATTTCAGAATCACGACTAAATGTTAAACATAATACACTATCTTCCATCATCATAAATGTATCCTGAGCTTGATATTTTAGATCTTTTCTTAGCTTCCCAGTTGTAAAATTCCATACTTCAATGAAGCCATCAACTGAACCAGTCACTAAGAATTGACCATCTGGACTGAACCT GGCACATTCGACATGACACTTTTGAACTACTCGTATAACAGTAGACAATTTAGTAGGTGGTTTTTCTTCTTCTTGTTCACGTACTGCAGCTTTACCACGAAATACATCAATTGCTGTACCAGGTGGTAACAATCCTTGATGTTGTTGCCATTTAAGCGCCTGGCTAAGTAATGCCAGCAAACGTGACGGAGCTACAACGCTTA CTTCTTCAGACAATGAAGTAGCCAGTGCTTGACGACGTTTATC ]
[+] EMBL CD115937 [ attttaataAACCTAGGCACGTTCGACATGACACTTTTGAACTACTCGTATAACAGTAGACAATTTAGTAGGTGGTTTTTCTTCTTCTTGTTCACGTACTGCAGCTTTACCACGAAATACATCAATTGCTGTACCAGGTGGTAACAATCCTTGATGTTGTTGCCATTTAAGCGCCTGGCTAAGTAATGCCAGCAAACGTGACGGAGCTACAACGCTTA CTTCTTCAGACAATGAAGTAGCCAGTGCTTGACGACGTTTATCTTTCGATTGACCATCTGAATAAGCCTCTCTTGGATCAAAATATGACCTATTCAAAAGATTATCTAAATGTGTATAACGATCAGGTTGTGTACGTTTCATAGTAATCATTGGTTCG GTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTTTTGTTCTGGTAATTCTAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAATAATATC GGATACAAAACTTTCTATAGATTCAACAGTATTCAATGATACTC TTGTTTCTTCCTGTACTGTACGTAATGTTCGTAATAAATCACTCTCTTTT AATACTGTTCTATTAAGCG ]
[+] EMBL CD115675 [ ACTTTTGAACTACTCGTATAACAGTAGACAATTTAGTAGGTGGTTTTTCTTCTTCTTGTTCACGTACTGCAGCTTTACCACGAAATACATCAATTGCTGTACCAGGTGGTAACAATCCTTGATGTTGTTGCCATTTAAGCGCCTGGCTAAGTAATGCCAGCAAACGTGACGGAGCTACAACGCTTA CTTCTTCAGACAATGAAGTAGCCAGTGCTTGACGACGTTTATCTTTCGATTGACCATCTGAATAAGCCTCTCTTGGATCAAAATATGACCTATTCAAAAGATTATCTAAATGTGTATAACGATCAGGTTGTGTACGTTTCATAGTAATCATTGGTTCG GTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTCTTGTTCTGGGAA TTTAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAAATATATCGGGATACAAAACTTTCTATAGATTCAACAGTATTCAATGATACTCTTTGTTTCTTCCTGTACTGGACGTAATGTTCGGAATAAATTACTTTCTTTTAAATACTGGTCTATTAAGCGG ]
[-] EMBL CD115941 [ CTTNTGAACTACTCGTATACCAGTAGACAATTTAGTAGGTGG TNTTCTTCTTCTTGTTCACGAACTGCAGCTTTACCACGAAATACATCAATTGCTGTACCAGGTGGTAACAATCCTTGATGTTGTTGCCATTTAAGCGCCTGGCTAAGTAATGCCAGCAAACGTGACGGAGCTACAACGCTTA CTTCTTCAGACAATGAAGTAGCCAGTGCTTGACGACGTTTATCTTTCGATTGACCATCTGAATAAGCCTCTCTTGGATCAAAATATGACCTATTCAAAAGATTATCTAAATGTGTATAACGATCAGGTTGTGTACGTTTCATAGTAATCATTGGTTCG GTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTTTTGTTCTGGTAATTTTAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAATAATATC GGATACAAAACTTTCTATAGATTCAACAGTATTCAATGATACTC TTGTTTCTTCCTGTACTGTACGTAATGTTCGTAATAAATTACTTTCTTTTAAATACTGTTCTATTAAGCG ]
[-] EMBL CD130641 [ TGCAGCTTTACCACGAAATACATCAATGNCTGTACCAGGTGGTACAAATCCTTGATGTTGTGCCCATTTAAGCGCCTGGCTAAGTAATGCCAGCAAACGTGACGGAGCTACAACGCTTANCTTCTTCAGACAATGAAGTAGCCAGTGCTTGACGACGTTTATCTTTCGATTGACCATCTGAATAAGCCTCTCTTGGATCAAAATATGACCTATTCAAAAGATTATCTAAATGTGTATAACGATCAGGTTGTGTACGTTTCATAGTAATCATTGGTTCGGNGTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTTTTGTTCTGGTAATTTTAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAATAATATC GGATACAAAACTTTCTATAGATTCAACAGTATTCAATGATACTC TTGTTTCTTCCTGTACTGTACGTAATGTTCGTAATAAATTACTTTCTTTTAAATACTGTTCTATTAAGCGTACTACATCAGCTGATTCGATTTCCGATATTCCATTAA]
[-] EMBL CD146075 [ TTATCTTTCGATTGACCATCTGAATAAGCCTCTCTTGGATCAAAATATGACCTATTCAAAAGATTATCTAAATGTGTATAACGATCAGGTTGTGTACGTTTCATAGTAATCATTGGTTCG GTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTTTTGTTCTGGTAATTTAAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAATAATATC GGATACAAAAC ]
consensusID : consensus_9468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence
[TGTATCGGTAGATCTCCCATATGATTAACCTTCTGGCGGATGAGAATACGACATAGTCAAAATATGATGTAGACAGGGAGAAGGCTTAGGGGGTGGGCGTTTCATAGTAATCATTGGTTCGGTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTTTTGTTCTGGTAATTTAAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAATAATATCGGATACAAAAC]
[-] EMBL CD146073 [TGTATCGGTAGATCTCCCATATGATTAACCTTCTGGCGGATGAGAATACGACATAGTCAAAATATGATGTAGACAGGGAGAAGGCTTAGGGGGTGGGCGTTTCATAGTAATCATTGGTTCGGTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTTTTGTTCTGGTAATTTAAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAATAATATCGGATACAAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9468#0 GAACAATCTGTCCTTGCATATTCATGATAGCAACTGTATTAGAACGACTAGCTACAACAA 60
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 ATTGATCTGTATTACGAGGCATTAAATGAACTGAATGAATTGATACTTCATGACCAACTA 120
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 GACCAGATATTGCCTTAAATGTATTTGTACACTCTCCTGAACGAATTGACCATATGCGTA 180
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 CAGAACCATCAGCGCTTCCACTTATTATATTGTGTCCATCAGGTAAAAATGCTACAGAAT 240
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 TTACAACACCTGTATGACCAGTAAATTCTTTAATAATTTTACACGATTTCATTCCATGTA 300
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 TTCGAATGCTATGATCTAGACTAGCTGATAATATATGTGTATTATCTTTAGAGAATTGTA 360
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 TTGCTGTAACACCTTTAAGATGTGCTTTTTCTAAACGTTTTAAACATTGACCATTTTGTA 420
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 TACGCCAAATTTTAATTGTTCCCTCTTTAGCACCAGATGCTAACATTTCAGAATCACGAC 480
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 TAAATGTTAAACATAATACACTATCTTCCATCATCATAAATGTATCCTGAGCTTGATATT 540
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 TTAGATCTTTTCTTAGCTTCCCAGTTGTAAAATTCCATACTTCAATGAAGCCATCAACTG 600
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 AACCAGTCACTAAGAATTGACCATCTGGACTGAACCTGGCACATTCGACATGACACTTTT 660
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 GAACTACTCGTATAACAGTAGACAATTTAGTAGGTGGTTTTTCTTCTTCTTGTTCACGTA 720
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 CTGCAGCTTTACCACGAAATACATCAATTGCTGTACCAGGTGGTAACAATCCTTGATGTT 780
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 GTTGCCATTTAAGCGCCTGGCTAAGTAATGCCAGCAAACGTGACGGAGCTACAACGCTTA 840
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 CTTCTTCAGACAATGAAGTAGCCAGTGCTTGACGACGTTTATCTTTCGATTGACCATCTG 900
consensus_9468#1 -------------------------------------TGTATCGGTAGATCTCCCATATG 23
* **** * *** **** **
consensus_9468#0 AATAAGCCTCTCTTGGATCAAAATATGACCTATTCAAAAGATTATCTAAATGTGTATAAC 960
consensus_9468#1 ATTAACCTTCTGGCGGATGAGAATACGACATAGTCAAAATATGATGTAGACAGGGAGAAG 83
* *** * *** **** * **** *** ** ****** ** ** ** * * * **
consensus_9468#0 GATCAGGTTGTGTACGTTTCATAGTAATCATTGGTTCGGTTTGTCTAAGGATTGATCTAG 1020
consensus_9468#1 GCTTAGGGGGTGGGCGTTTCATAGTAATCATTGGTTCGGTTTGTCTAAGGATTGATCTAG 143
* * *** *** **********************************************
consensus_9468#0 CTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCA 1080
consensus_9468#1 CTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCA 203
************************************************************
consensus_9468#0 ATTTTTGTTCTGGTAATTTTAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCAT 1140
consensus_9468#1 ATTTTTGTTCTGGTAATTTAAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCAT 263
******************* ****************************************
consensus_9468#0 TAATAATATCGGATACAAAACTTTCTATAGATTCAACAGTATTCAATGATACTCTTGTTT 1200
consensus_9468#1 TAATAATATCGGATACAAAAC--------------------------------------- 284
*********************
consensus_9468#0 CTTCCTGTACTGTACGTAATGTTCGTAATAAATTACTTTCTTTTAAATACTGTTCTATTA 1260
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 AGCGGACTACATCAGCTGATTCGATTTCCGATATTCCATTAA 1302
consensus_9468#1 ------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||