These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9472#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 591 fasta sequence [AAGAGAGAAGGTGGAAAAATCCCTAAGAAGACAATCGAAATAGAAACTGTAGAAGAAACTACGAAGAAAGGAGCTCCTCGTATTCCAAGAAAAACAATTGGAATAGAAACTGTAGTGGAAACAATTGATAAGGGAGTTCCACGTATTCCAAAACGTAGAATTGAAATAGAAACTGTAGTGGATGCAACAAAGAGAAAGAAGAAAATAGATAAAGTCATTGATACAGTCAAAGTTTTATTCCGACCACCAAAACGAAGACCAATAACCATAAGAGGTGGTTTTAAGGTAGGTGGTAAACGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTTGCTGGAGTGGCCGCTTATAAGGACTGTTATTTTCTACACATTATTTA] [+] EMBL CD145107 [AAGAGAGAAGGTGGAAAAATCCCTAAGAAGACAATCGAAATAGAAACTGTAGAAGAAACTACGAAGAAAGGAGCTCCTCGTATTCCAAGAAAAACAATTGGAATAGAAACTGTAGTGGAAACAATTGATAAGGGAGTTCCACGTATTCCAAAACGTAGAATTGAAATAGAAACTGTAGTGGATGCAACAAAGAGAAAGAAGAAAATAGATAAAGTCATTGATACAGTCAAAGTTTTATTCCGACCACCAAAACGAAGACCAATAACCATAAGAGGTGGTTTTAAGGTAGGTGGTAAACGAACTGGTAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGCTGGTGGCATTAAAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTTGCTGGAGTGGCCGCTTATAAGGACTGTTATTTTCTACACATTA ] [-] EMBL CD135249 [ GTTCCACGTATTCCAAAACGTAGAATTGAAATAGAAACTGTAGTGGATGCCCCAAAGAGAAAGAAGAAAATAGATAAAGTCATTGATACAGTCAAAGTTTTATTCCGACCACCAAAACGAAGACCAATAACCATAAGAGGTGGTTTTAAGGTAGGTGGTAAACGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTAGAG ] [-] EMBL CD146508 [ AACGTAGAATTGAAATAGAAACTGTAGTGGATGCAACAAAGAGAAAGAAGAAAATAGATAAAGTCATTGATACAGTCAAAGTTTTATTCCGACCACCAAAACGAAGACCAATAACCATAAGAGGTGGTTTTAAGGTAGGTGGTAAACGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTA ] [+] EMBL CD135147 [ GTCATTGATACAGTCAAAGTTTTATTCCGACCACCAAAACGAAGACCAATAACCATAAGAGGTGGTTTTAAGGTAGGTGGTAAACGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGT ] [+] EMBL CD145147 [ AGGTAGGTGGTAAACGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTTGCTGGAGTGGCCGCTTATAAGGACTGTTATTTTCTACACATTA ] [+] EMBL CD145083 [ AGGTAGGTGGTAAACGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCGCATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTTGCTGGAGTGGTCGCTTATAAGGACTGTTATTTTCTACACATTA ] [+] EMBL CD145042 [ AGGTAGGTGGTAAACGAACTGGGAATCGGCACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTTGCTGGAGTGGCCGCTTATAAGGACTGTTATTTTCTACACATTA ] [+] EMBL CD145069 [ AGGTAGGTGGTAAACGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCTGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTTGCTGGAGTGGCCGTTTATAAGGACTGTTATTTTCTACACATTATTTA] consensusID : consensus_9472#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [AATATCACTGAATTCCTGCTATTTTCCAACTTTGTCTTGTTTAGTGATTATGTAACACAGATATATTTCTCTTTCATATTTCTAGATAAAGTCATTGATACAGTCAAAGTTTTATTCCGACCACCAAAACGAAGACCAATAACCATAAGAGGTAGTATTTTTCAATATCTATAATTTTATTTTAAATTAATCACATGAATACTTATGATTTAGTTTTCGAACTTAACAAAAGCACTGATAT] [+] EMBL CD135318 [AATATCACTGAATTCCTGCTATTTTCCAACTTTGTCTTGTTTAGTGATTATGTAACACAGATATATTTCTCTTTCATATTTCTAGATAAAGTCATTGATACAGTCAAAGTTTTATTCCGACCACCAAAACGAAGACCAATAACCATAAGAGGTAGTATTTTTCAATATCTATAATTTTATTTTAAATTAATCACATGAATACTTATGATTTAGTTTTCGAACTTAACAAAAGCACTGATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9472#0 AAGAGAGAAGGTGGAAAAATCCCTAAGAAGACAATCGAAATAGAAACTGTAGAAGAAACT 60 consensus_9472#1 ------------------------------------------------------------ consensus_9472#0 ACGAAGAAAGGAGCTCCTCGTATTCCAAGAAAAACAATTGGAATAGAAACTGTAGTGGAA 120 consensus_9472#1 ------------------------------------------------------------ consensus_9472#0 ACAATTGATAAGGGAGTTCCACGTATTCCAAAACGTAGAATTGAA-ATAGAAACTGTAGT 179 consensus_9472#1 --AAT--ATCACTGAATTCCTGCTATTTTCCAACTTTGTCTTGTTTAGTGATTATGTAAC 56 *** ** * ** **** **** *** * * *** * ** **** consensus_9472#0 GGATGCAACAAAGAGAAAGAAGAAAATAGATAAAGTCATTGATACAGTCAAAGTTTTATT 239 consensus_9472#1 ACAGATATATTTCTCTTTCATATTTCTAGATAAAGTCATTGATACAGTCAAAGTTTTATT 116 * * * ********************************** consensus_9472#0 CCGACCACCAAAACGAAGACCAATAACCATAAGAGGTGGT--TTTAAGGTAGGTGGTAAA 297 consensus_9472#1 CCGACCACCAAAACGAAGACCAATAACCATAAGAGGTAGTATTTTTCAATATCTA-TAAT 175 ************************************* ** *** ** * *** consensus_9472#0 CGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGC 357 consensus_9472#1 TTTATTTTAAATTAAT-CACATGAATACTTA-TGATTTAGTTTTCGAACTTAACAAAAGC 233 * * *** ** ** * * *** * ** * * ** consensus_9472#0 ATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGT 417 consensus_9472#1 ACTGATAT---------------------------------------------------- 241 * * ** consensus_9472#0 TGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGC 477 consensus_9472#1 ------------------------------------------------------------ consensus_9472#0 CGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGA 537 consensus_9472#1 ------------------------------------------------------------ consensus_9472#0 GCTCGTTGCTGGAGTGGCCGCTTATAAGGACTGTTATTTTCTACACATTATTTA 591 consensus_9472#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||