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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1541 fasta sequence
[CTGACTGATGTGAAATGTGGTGACTTGTACTGATTGACACGTACCGAGTCGTAAGTTAATGATGACTGACTTACTTAGTCGGACGACTCAATCAGGACTTCCAGCCGATATTCGTATGCTTGAACCCTACGTTACATCAATTTAAGGAAACTGATATCTTTCACTCACGTTAAGTGTGACTCAGAGCCGTGTTTATGAATTGGCACTTTGTCACTGAGTCGCATCTACAATAATATTTTGATTATACGCCAGTGAGAATGATGCGACTTAATCTAGATCAGTGTTCAGTTATTTGTTCATTTCAAGGTACACAGGACACTTAGTACTTGAATCAAATAAGAACAAAATTTATATTATGTTTGTATTTGGTATTTGTAAGGATGTGCTTGCATCAGTGAGGGTGTTAATTGGTTTTTATCCAATAAAACTGTTTTTCATTATCATGGTACGGTAACCAAGACTGATAAACAGAACTCTTTCTTTACTTGCAGATTGTATTTTGAATATGTCTGAAAAGAACGAAAGCAGCGATTAGCTGGTGTTAAACTCGATGAAAACCCACTGAAGCCTACACTAGAAGAAATCGATGTTGCGAATTACTTACATAAAAAGCTACCATCTAAAGAAGGGCGTCTCTCGGGAATGATTGTTCGCATATTCGTAGCAATGGAAGCCGTAGAGTTACTGATGAATTCCCATTGGGCTAGATCAAATGACGATGCGAAACCAACTCTTTTTACAAGTCAAACTACAGCAGTTAATTTCATGACAACTTTGTTTCAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCCTAAGCTGAAAAAACTTACTGATGGAAAGATTGTCTCCAGTAAAAATGTTGTCGATGCGACTTCAGATGAAAATTTGAGTTCTCAAGATCCTGATTCTAAATCACCCAAATTTGGCATTTTATCATCTATCTCCTCCAGTATTAACGAATTCACAATGAAATCTCCCAATAAGAAACCCATGCGACTAGAAATCGTCGACGAACAAAAATTTGTACTGGATGATCCACACACATTTTATGTTTGGATCTACGAACCACCACCGGGACTTTTTACATGGTTGGCTGGTGCAGCTTTAATTATTGGTATTATACTATGCTGTTTATTTCCTATCTGGCCATCAGAATTACGCCAATGTGCATATTATTTGACTATAACTGCTTCAGGACTTCTAGGTCTTTTACTTTTCGTAGGATTATTGCGTTTCTGTTTTTATTTGCTTGTCTGGTTATCTACTTTAG-GCCAATACAGTTTTTGGATATTTCCTAATTATTTTGAAGATTGTGGTTTCTTTGAGTCATTTCGTCCATTGTATTCACTTAAACATGCATGTGATGTTCTAGCACCATCTAACAAGAGAAGCAAATCGAAAGTAAAGTCAACTAGTGATGTTTTCACTATTGATTTCGCCACGAGTAGTAGCAATACTAGTACTGGTACTGGTAGTGATGCTAATATTGTCCA]
[+] EMBL CD131738 [CTGACTGATGTGAAATGTGGTGACTTGTACTGATTGACACGTACCGAGTCGTAAGTTAATGATGACTGACTTACTTAGTCGGACGACTCAATCAGGACTTCCAGCCGATATTCGTATGCTTGAACCCTACGTTACATCAATTTAAGGAAACTGATATCTTTCACTCACGTTAAGTGTGACTCAGAGCCGTGTTTATGAATTGGCACTTTGTCACTGAGTCGCATCTACAATAATATTTTGATTATACGCCAGTGAGAATGATGCGACTTAATCTAGATCAGTGTTCAGTTATTTGTTCATTTCAAGGTACACAGGACACTTAGTACTTGAATCAAATAAGAACAAAATTTATATTATGTTTGTATTTGGTATTTGTAAGGATGTGCTTGCATCAGTGAGGGTGTTAATTGGTTTTTATCCAATAAAACTGTTTTTCATTATCATGGTACGGTAACCAAGACTGATAAACAGAACTCTTTCTTTACTTGCAGATTGTATTTTGAATATGTCTGAAAAGAACGAAAGCAGCGATTAGCTGGTGTTAAACTCGATGAAAACCCACTGAAGCCTACACTAGAAGAAATCGATGTTGCGAATTACTTACATAAAAA ]
[+] EMBL BF936980 [ ACGAAAGCAGCGATTAGCTGGGGTTAAACTCGATGAAAACCCACTGAAGCCTACACTAGAAGAAATCGATGTTGCGAATTACTTACATAAAAAGCTACCATCTAAAGAAGGGCGTCTCTCGGGAATGATTGTTCGCATATTCGTAGCAATGGAAGCCGTAGAGTTACTGATGAATTCCCATTGGGCTAGATCAAATGACGATGCGAAACCAACTCTTTTTACAAGTCAAACTACAGCAGTTAATTTCATGACAACTTTGTTTCAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCCTAAGCTGAAAAAACTTACTGATGGAAAGATTGTCTCCAGTAAAAATGTTGTCGATGCGACTTCAGATGAAAATTTGAGTTCTCAAGATCCTGATTCTAAATCACCCAAATTTGGCATTTTATCATCTATCTCCTCCAGTATTAACGAATTCACAATGAAATCTCCCAATAAGAAACCCATGCGACTAGAAATC ]
[-] EMBL BG932637 [ GCTAGATCAAATGACGATGCGAACACAACTCTTTTTACAAGTCAAACTACAGCAGTTAATTTCATGACAACTTTGTTTCAGAAGCAAATGTTTCAGCGTGCAGTTCATGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCATAAGCTGAAAAAACTTACTGATGGAAAGATTGTCTCCAGTAAAAATGTTGTCGATGCGACTTCAGATGAAAATTTGAGTTCTCAAGATCGTGATTCTAAATCACCCAAATTTGGCATTTTATCGTCTATCTCCCCC ]
[+] EMBL CD170413 [ GTTTCAGAAGCAAATGTTACAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCCTAAGCTGAAAAAACTTACTGATGGAAAGATTGTCTCCAGTAAAAATGTTGTCGATGCGACTTCAGATGAAAATTTGAGTTCTCAAGATCCTGATTCTAAATCACCCAAATTTGGCATTTTATCATCTATCTCCTCCAGTATTAACGAATTCACAATG ]
[-] EMBL CD120821 [ TTTCAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCCTAAGCTGAAAAAACTTACTGATGGAAAGATTGTCTCCAGTAAAAATGTTGTCGATGCGACTTCAGATGAAAATTTGAGTTCTCAAGATCCTGATTCTAAATCACCCAAATTTGGCATTTTATCATCTATCTCCTCCAGTATTAACGAATTCACAATGA ]
[-] EMBL CD120839 [ TTTCAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCCTAAGCTGAAAAAACTTACTGATGGAAAGATTGTCTCCAGTAAAAATGTTGTCGATGCGACTTCAGATGAAAATTTGAGTTCTCAAGATCCTGATTCTAAATCACCCAAATTTGGCATTTTATCATCTATCTCCTCCAGTATTAACGAATTCACAATGA ]
[+] EMBL AI977199 [ CCCAAATTTGGCATTTTATCATCTATCTCCTCCAGTATTAACGAATTCACAATGAAATCTCCCAATAAGAAACCCATGCGACTAGAAATCGTCGACGAACAAAAATTTGTACTGGATGATCCACACACATTTTATGTTTGGATCTACGAACCACCACCGGGACTTTTTACATGGTTGGCTGGTGCAGCTTTAATTATTGGTATTATACTATGCTGTTTATTTCCTATCTGGCCATCAGAATTACGCCAATGTGCATATTATTTGACTATAACTGCTTCAGGACTTCTAGGTCTTTTACTTTTCGTAGGATTATTGCGTTTCTGTTTTTATTTGCTTGTCTGGTTATCTACTTTAG GCCAATACAGTTTTTGGATATTTCCTAATTATTTTGAAGATTGTGGTTTCTTTGAGTCATTTCGTCCATTGTATTCACTTAAACATGCATGTGATGTTCTAGCACCATCTAACAAGAGAAGCAAATCGAAAGTAAAGTCAACTAGTGATGTTTTCACTATTGATTTCGCCACGAGTAGTAGCAATACTAG ]
[+] EMBL CD147797 [ TTATTTGACTATAACTGCTTCAGGACTTCTAGGTCTTTTACTTTTCGTAGGATTATTGCGTTTCTGTTTTTATTTGCTTGTCTGGTTATCTACTTTAGTGCCAATACAGTTTTTGGATATTTCCTAATTATTTTGAAGATTGTGGTTTCTTTGAGTCATTTCGTCCATTGTATTCACTTAAACATGCATGTGATGTTCTAGCACCATCTAACAAGAGAAGCAAATCGAAAGTAAAGTCAACTAGTGATGTTTCCACTATTGATTTCGCCACGAGTAGTAGCAATACTAGTACTGGTACTGGTAGTGATGCTAATATTGTCCA]
consensusID : consensus_9476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence
[ATTCGGCACGAGGAAGAAGGGCGTCTCTCGGGAATGATTGTTCGCATATTCGTAGCAATGGAAGCCGTAGAGTTACTGATGAATTCCCATTGGGCTAGATCAAATGACGATGCGAAACCAACTCTTTTTACAAGTCAAACTACAGCAGTTAATTTCATGACAACTTTGTTTCAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCCTAAGCTGAAAAACTTACTGATGGAAAGATTNGTCTCAGTAAAATGTTGTCG]
[+] EMBL CD077904 [ATTCGGCACGAGGAAGAAGGGCGTCTCTCGGGAATGATTGTTCGCATATTCGTAGCAATGGAAGCCGTAGAGTTACTGATGAATTCCCATTGGGCTAGATCAAATGACGATGCGAAACCAACTCTTTTTACAAGTCAAACTACAGCAGTTAATTTCATGACAACTTTGTTTCAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAAGATGCGAAATCATTGAAGCCTAAGCTGAAAAACTTACTGATGGAAAGATTNGTCTCAGTAAAATGTTGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9476#0 CTGACTGATGTGAAATGTGGTGACTTGTACTGATTGACACGTACCGAGTCGTAAGTTAAT 60
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 GATGACTGACTTACTTAGTCGGACGACTCAATCAGGACTTCCAGCCGATATTCGTATGCT 120
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 TGAACCCTACGTTACATCAATTTAAGGAAACTGATATCTTTCACTCACGTTAAGTGTGAC 180
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 TCAGAGCCGTGTTTATGAATTGGCACTTTGTCACTGAGTCGCATCTACAATAATATTTTG 240
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 ATTATACGCCAGTGAGAATGATGCGACTTAATCTAGATCAGTGTTCAGTTATTTGTTCAT 300
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 TTCAAGGTACACAGGACACTTAGTACTTGAATCAAATAAGAACAAAATTTATATTATGTT 360
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 TGTATTTGGTATTTGTAAGGATGTGCTTGCATCAGTGAGGGTGTTAATTGGTTTTTATCC 420
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 AATAAAACTGTTTTTCATTATCATGGTACGGTAACCAAGACTGATAAACAGAACTCTTTC 480
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 TTTACTTGCAGATTGTATTTTGAATATGTCTGAAAAGAACGAAAGCAGCGATTAGCTGGT 540
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 GTTAAACTCGATGAAAACCCACTGAAGCCTACACTAGAAGAAATCGATGTTGCGAATTAC 600
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 TTACATAAAAAGCTACCATCTAAAGAAGGGCGTCTCTCGGGAATGATTGTTCGCATATTC 660
consensus_9476#1 ---------ATTCGGCACGAGGAAGAAGGGCGTCTCTCGGGAATGATTGTTCGCATATTC 51
* * * **************************************
consensus_9476#0 GTAGCAATGGAAGCCGTAGAGTTACTGATGAATTCCCATTGGGCTAGATCAAATGACGAT 720
consensus_9476#1 GTAGCAATGGAAGCCGTAGAGTTACTGATGAATTCCCATTGGGCTAGATCAAATGACGAT 111
************************************************************
consensus_9476#0 GCGAAACCAACTCTTTTTACAAGTCAAACTACAGCAGTTAATTTCATGACAACTTTGTTT 780
consensus_9476#1 GCGAAACCAACTCTTTTTACAAGTCAAACTACAGCAGTTAATTTCATGACAACTTTGTTT 171
************************************************************
consensus_9476#0 CAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAA 840
consensus_9476#1 CAGAAGCAAATGTTTCAGCGTGCAGTTCGTGTCAAGAAAAAGCCCACCAAACACCGAGAA 231
************************************************************
consensus_9476#0 GATGCGAAATCATTGAAGCCTAAGCTGAAAAAACTTACTGATGGAAAGATTGTCTCCAGT 900
consensus_9476#1 GATGCGAAATCATTGAAGCCTAAGCTGAAAAA-CTTACTGATGGAAAGATTNGTCTCAGT 290
******************************** ****************** ****
consensus_9476#0 AAAAATGTTGTCGATGCGACTTCAGATGAAAATTTGAGTTCTCAAGATCCTGATTCTAAA 960
consensus_9476#1 AAAA-TGTTGTCG----------------------------------------------- 302
**** ********
consensus_9476#0 TCACCCAAATTTGGCATTTTATCATCTATCTCCTCCAGTATTAACGAATTCACAATGAAA 1020
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 TCTCCCAATAAGAAACCCATGCGACTAGAAATCGTCGACGAACAAAAATTTGTACTGGAT 1080
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 GATCCACACACATTTTATGTTTGGATCTACGAACCACCACCGGGACTTTTTACATGGTTG 1140
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 GCTGGTGCAGCTTTAATTATTGGTATTATACTATGCTGTTTATTTCCTATCTGGCCATCA 1200
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 GAATTACGCCAATGTGCATATTATTTGACTATAACTGCTTCAGGACTTCTAGGTCTTTTA 1260
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 CTTTTCGTAGGATTATTGCGTTTCTGTTTTTATTTGCTTGTCTGGTTATCTACTTTAGGC 1320
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 CAATACAGTTTTTGGATATTTCCTAATTATTTTGAAGATTGTGGTTTCTTTGAGTCATTT 1380
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 CGTCCATTGTATTCACTTAAACATGCATGTGATGTTCTAGCACCATCTAACAAGAGAAGC 1440
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 AAATCGAAAGTAAAGTCAACTAGTGATGTTTTCACTATTGATTTCGCCACGAGTAGTAGC 1500
consensus_9476#1 ------------------------------------------------------------
consensus_9476#0 AATACTAGTACTGGTACTGGTAGTGATGCTAATATTGTCCA 1541
consensus_9476#1 -----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||