|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 689 fasta sequence
[CCCTCCGAGGCCAANAATTCGGCACGAGGGTTGCTTACTTGAATTCTTCTACTGTATAAACGACTTATAATGTCTATTTGTTTTGTAAAACAGATATTATGAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT]
[+] EMBL CD082031 [CCCTCCGAGGCCAANAATTCGGCACGAGGGTTGCTTACTTGAATTCTTCTACTGTATAAACGACTTATAATGTCTATTTGTTTTGTAAAACAGATATTATGAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAAC ]
[-] EMBL CD075644 [ TAAACGACTTATAATGTCTATNTGTTTTGTAAAACAGATATTATGAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT]
consensusID : consensus_9493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 682 fasta sequence
[CCGAGGCCANAATTCGGCACGAGGGTCGAGCGACGTTTGAGGACAGTCTCACTGGTTAGGTTTGAGGGTTAGGGTTAGGAATCCGGATATTATGAAAATATAGCCATCGTCGG-CCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT]
[+] EMBL CD080426 [CCGAGGCCANAATTCGGCACGAGGGTCGAGCGACGTTTGAGGACAGTCTCACTGGTTAGGTTTGAGGGTTAGGGTTAGGAATCCGGATATTATGAAAATATAGCCATCGTCGG CCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGGTCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT]
[+] EMBL CD080418 [CCGAGGCCANAATTCGGCACGA GGTCGAGCGACGTTTGAGGACAGTCTCACTGGTTAGGTTTGAGGGTTAGGGTTAGGAATCCGGATATTATGAAAATATAGCCATCGTCGG CCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCTTTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACTTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTNTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAAC ]
[-] EMBL CD074510 [ CGAGCGACGTTTGAGGACAGTCTCACTGGTTAGGTTTGAGGGTTAGGGTTAGGAATCCGGATATTATGAAAATATAGCCATCGTCGG CCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCTTTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACTTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT]
[-] EMBL CD074332 [ CGTTTGAGGACAGTCTCACTGGTTAGGTTTGAGGGTTAGGGTTAGGAATCCGGATATTATGAAAATATAGCCATCGTCGG CCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCTTTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACTTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT]
[-] EMBL CD074518 [ GGTTTGAGGGTTAGGGTTAGGAATCCGGATATTATGAAAATATAGCCATCGTCGG CCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTTTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT]
[-] EMBL CD074339 [ AGGGTTAGGGTTAGGAATCCGGATATTATGAAAATATAGCCATCGTCGGCCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAACCCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTATTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGATTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCACCAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGCCAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT]
consensusID : consensus_9493#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 438 fasta sequence
[ATAACAGATAAGTGGGTTTTCGCAAATAATATAATATTTCCTTTCCTAGTTGCTTACTTGAATTCTTTTACTGTATAAACGACTTATAATGTCTATTTGTTTTGTAAAACAGATATTATGAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTTTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGGTAAGTAACAGCCCAAATATTCATTTAGTTACCCACCATTCTGTCGTCAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATC]
[-] EMBL CD193362 [ATAACAGATAAGTGGGTTTTCGCAAATAATATAATATTTCCTTTCCTAGTTGCTTACTTGAATTCTTTTACTGTATAAACGACTTATAATGTCTATTTGTTTTGTAAAACAGATATTATGAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTTTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGGTAAGTAACAGCCCAAATATTCATTTAGTTACCCACCATTCTGTCGTCAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATC]
[-] EMBL CD193369 [ GAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGGTAAGTAACAGCCCAAATATTCATTTAGTTACCCACCATTCTGTCGTCAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9493#0 ------------------CCCTCCGAGGCCAANAA-TTCGGCACGAGGGTTGCTTACTTG 41
consensus_9493#1 ----------------------CCGAGGCCANAA--TTCGGCACGAGGGTCG---AGCGA 33
consensus_9493#2 ATAACAGATAAGTGGGTTTTCGCAAATAATATAATATTTCCTTTCCTAGTTGCTTACTTG 60
* * * * ** ** * *
consensus_9493#0 AATTCTTCTACTGTATAAACGACTTATAATGTCTATTTGTTTTGTAAAAC-AGATATTAT 100
consensus_9493#1 CGTTTGAGGACAGTCTCACTGGTTAGGTTTGAGGGTTAGGGTTAGGAATCCGGATATTAT 93
consensus_9493#2 AATTCTTTTACTGTATAAACGACTTATAATGTCTATTTGTTTTGTAAAAC-AGATATTAT 119
** ** ** * * * * ** ** * ** ** * ********
consensus_9493#0 GAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACA 160
consensus_9493#1 GAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACA 153
consensus_9493#2 GAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACA 179
************************************************************
consensus_9493#0 TTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATAC 220
consensus_9493#1 TTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATAC 213
consensus_9493#2 TTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATAC 239
************************************************************
consensus_9493#0 TGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCA 280
consensus_9493#1 TGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCA 273
consensus_9493#2 TGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCA 299
************************************************************
consensus_9493#0 AGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAA 340
consensus_9493#1 AGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAA 333
consensus_9493#2 AGTGCTTTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAG--------GTAAG 351
****** **************************************** **
consensus_9493#0 TCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCC 400
consensus_9493#1 TCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCC 393
consensus_9493#2 TAACAGCCCAAATATTCATT--TAGTTACCCACCATTCTGT------CGTCAGCGACT-- 401
* *** * *** ** ** ** * ** ** * ** *
consensus_9493#0 AGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATG 460
consensus_9493#1 AGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATG 453
consensus_9493#2 AAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATC----------------------- 438
* * **** * * *** * **** *
consensus_9493#0 GCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATT 520
consensus_9493#1 GCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATT 513
consensus_9493#2 ------------------------------------------------------------
consensus_9493#0 ATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAA 580
consensus_9493#1 ATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAA 573
consensus_9493#2 ------------------------------------------------------------
consensus_9493#0 GTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATT 640
consensus_9493#1 GTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATT 633
consensus_9493#2 ------------------------------------------------------------
consensus_9493#0 AATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT 689
consensus_9493#1 AATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT 682
consensus_9493#2 -------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||