These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 884 fasta sequence [CTTTTTTTTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAATAGATTATTTAAGAAGGCAAAAAGTAACCTAACATCTGGCTCGGGATCAGGTGGGTTCCAGATAACTCTAACAAAAGATAGTGTCGTAAGTTGCGGATCGCAATAATCGGATAGCCAAAAGCTGGATGTCTCACAAGGAAACGCAGAATACGAAAGCGAAAAAAAGATCGAACAGGAGAAGAAAGAGAAAACAGTTGGGATTTTGCCTATTTGGCCAAACTGTTCTTGATGCTGCCGGTGAAAAGCCGTGGTATGATGTGCACCCTCGAACCCATCAGCATCATGAAAGCGAACGAAAAAAAAACAAAGAAGAACTGGAAATAAAGAAGAAAACGTTGGCTGACCCATTAACAGAAATGAAGAAGGTTGAGGAGATGTTCAAACGCAGTAAGGAACTAAAAAGACAGAGCGAAGCAGCTGAACTCGAACGTGCCAGTGCTTGCATTCATGCTATGCCAAAC-TTATTTCCTGATGACATAATGGTACCAAAGTGCCCATACAAAGAGGCTTCGAAAAGTCGGCGAACAGGAAGTAGGTATAGTCAATCACTTACTGAAACTTCGTGTAATTCATTTGGGGAGCTAACGAAAGATTTATCCACAGAGGTTTCTCTGAGTCCCGAAAGTATGGATAAAAAATCACATTTGATTGAAATGGCCAAGAGCTCAGACATTAATCGTCTTCGAGCTGAG] [+] EMBL CD187423 [CTTTTTTTTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAATAGATTATTTAAGAAGGCAAAAAGTAACCTAACATCTGGCTCGGGATCAGGTGGGTTCCAGATAACTCTAACAAAAGATAGTGTCGTAAGTTGCGGATCGCAATAATCGGATAGCCAAAAGCTGGATGTCTCACAAGGAAACGCAGAATACGAAAGCGAAAAAAA ] [+] EMBL CD185415 [ ATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACC AAAAAAAGAT GCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCCCGCTGATCAGGAAGCACGAATAGATTAT ] [+] EMBL CD162346 [ TGCGGATCGCAATAATCGGATAGCCAAAAGCTGGATGTCTCACAAGGAAACGCAGAATACGAAAGTGAAAAGAAGATCGAACAGGAGAAGAAAGAGAAAACAGTTGGGATTTTGCCTATTTGGCCAAACTGTTCTTGATGCTGCCGGTGAAAAGCCGTGGTATGATGTGCACCCTCGAACCCATCAGCATCATGAAAGCGAACGAAAAAAAAACAAAGAAGAACTGGAAATAAAGAAGAAAACGTTGGCTGACCCATTAACAGAAATGAAGAAGGTTGAGGAGATGTTC AACGCAGTAAGGAACTAAAAAGACAGAGCGAAGCAGCTGAACTCGAACGTGCCAGTGCTTGCATTCATGCTATGCCANACTTTATTTCCTGATGACATAATGGTACCA ] [-] EMBL CD071283 [ AAGCGAACGAAAAAAAAACAAAGAAGAACTGGAAATAAAGAAGAAAACGTTGGCTGACCCATTAACAGAAATGAAGAAGGTTGAGGAGATGTTCAAACGCAGTAAGGAACTAAAAAGACAGAGCGAAGCAGCTGAACTCGAACGTGCCAGTGCTTGCATTCATGCTATGCCAAAC TTATTTCCTGATGACATAATGGTACCAAAGTGCCCATACAAAGAGGCTTCGAAAAGTCGGCGAACAGGAAGTAGGTATAGTCAATCACTTACTGAAACTTCGTGTAATTCATTTGGGGAGCTAACGAAAGATTTATCCACAGAGGTTTCTCTGAGTCCCGAAAGTATGGATAAAAAATCACATTTGATTGAAATGGCCAAGAGCTCAGACATTAATCGTCTTCGAGCTGAG] [-] EMBL CD071255 [ AGCGAACGAAAAAAAAACAAAGAAGAACTGGAAATAAAGAAGAAAACGTTGGCTGACCCATTAACAGAAATGAAGAAGGTTGAGGAGATGTTCAAACGCAGTAAGGAACTAAAAAGACAGAGCGAAGCAGCTGAACTCGAACGTGCCAGTGCTTGCATTCATGCTATGCCAAAC TTATTTCCTGATGACATAATGGTACCAAAGTGCCCATACAAAGAGGCTTCGAAAAGTCGGCGAACAGGAAGTAGGTATTGTCAATCACTTACTGAAACTTCGTGTAATTCATTTGGGGAGCTAACGAAAGGTTNATCCACAGAGGTTTCTCTGAGTCCCGAAAGTATGGATAAAAAATCACATTTGATTGAAATGGCCAAGAGCTCAGACATTAATCGTCTTCGAGCTGAG] consensusID : consensus_9494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 552 fasta sequence [TTATTTACCTTGCCGTCTACAACGCCTCTTATTTTCAGCCAGGAAGTGTTTACCAGTTATACAATCACAAAAAATTGGGTCAATTTGAAGGATTACTGGTCTGAGGATTATCCAGTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAATAGATTATTTAAGAAGGCAAAAAAGTAACCTAACATCTGGTTCGGGATCAGATGGGTTCCAGATAACTCTAACAAAAGATAGTGTCCTGGATGTCTCACAAGGAAACGCAGAATACGAAAGCGAAAAGAAGATCGAACAGGAGAAGAAAGAGAAAACAGTTGGGATTTTGACCTATTTAGGCCAAACTGTTCTTGATGCTGCCGGTGAAAAGCCGTGGTATGATGTGCACCCTCGAACCCATCAGCATCATGA] [+] EMBL CD195434 [TTATTTACCTTGCCGTCTACAACGCCTCTTATTTTCAGCCAGGAAGTGTTTACCAGTTATACAATCACTAAAAATTGGGTCAATTTGAAGGATTACTGGTCTGAGGATTATCCAGTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAA ] [+] EMBL CD185241 [ AGTGTTTACCAGTTATACAATCACAAAAAATTGGGTCAATTTGAAGGATTACTGGTCTGAGGATTATCCAGTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAATAGATTAT ] [+] EMBL CD133749 [ AGTGTTTACCAGTTATACAATCACAAAAAATTGGGTCAATTTGAAGGATTACTGGTCTGAGGATTATCCAGTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCGCAGCTCGCTGATCAGGAAGCACGAATAGATTAT ] [+] EMBL CD185198 [ AATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGACAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAATAGATTATTTAAGAAGGCAAAAAAGTAACCTAACATCTGGTTCGGGATCAGATGGGTTCCAGATAACTCTAACAAAAGATAGTGTCCTGGATGTCTCACAAGGAAACGCAGAATACGAAAGCGAAAAGAAGATCGAACAGGAGAAGAAAGAGAAAACAGTTGGGATTTTGACCTATTTAGGCCAAACTGTTCTTGATGCTGCCGGTGAAAAGCCGTGGTATGATGTGCACCCTCGAACCCATCAGCATCATGA] consensusID : consensus_9494#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [AATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGTGTTTACCAGTTATACAATCACTAAAAATTGGGTCAATTTGAAGGATTACTGGAAGTCTGAGGATTATCCAGTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGAAGAT] [+] EMBL CD191597 [AATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGTGTTTACCAGTTATACAATCACTAAAAATTGGGTCAATTTGAAGGATTACTGGAAGTCTGAGGATTATCCAGTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGAAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9494#0 ------------------------------------------------------------ consensus_9494#1 TTATTTACCTTGCCGTCTACAACGCCTCTTATTTTCAGCCAGGAAGTGTTTACCAGTTAT 60 consensus_9494#2 ------------------------------------------------------------ consensus_9494#0 -----------------------------------------------CTTTTTTTTAGCA 13 consensus_9494#1 ACAATCACAAAAAATTGGGTCAATTTGAAGGATTACTGGTCTGAGGATTATCCAGTAGCA 120 consensus_9494#2 ------------------------------------------------------------ consensus_9494#0 AGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAA 73 consensus_9494#1 AGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAA 180 consensus_9494#2 ----AATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAA 56 ******************************************************** consensus_9494#0 AAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATA 133 consensus_9494#1 AAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATA 240 consensus_9494#2 AAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATA 116 ************************************************************ consensus_9494#0 TGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAAT 193 consensus_9494#1 TGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAAT 300 consensus_9494#2 TGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGTGTTTAC 176 ***************************************************** * consensus_9494#0 AGATTATTTAAGAAGGCAAAAA-GTAACCTAACATCTGGCTCGGGATCAGGTGGGTTCCA 252 consensus_9494#1 AGATTATTTAAGAAGGCAAAAAAGTAACCTAACATCTGGTTCGGGATCAGATGGGTTCCA 360 consensus_9494#2 CAGTTATACAATCA--CTAAAAATTGGGTCAATTTGAAG---GATTACTGGAAGTCTGAG 231 **** ** * * **** * ** * * * * * * * consensus_9494#0 GATAACTCTAACAAAAGATAGTGTCGTAAGTTGCGGATCGCAATAATCGGATAGCCAAAA 312 consensus_9494#1 GATAACTCTAACAAAAGATAGTGTC----------------------------------- 385 consensus_9494#2 GATTATCCAGTAGCAAGATAATTCACTTCGT----------------------------G 263 *** * * ****** * consensus_9494#0 GCTGGATGTCTCACAAGGAAACGCAGAATACGAAAGCGAAAAAAAGATCGAACAGGA-GA 371 consensus_9494#1 -CTGGATGTCTCACAAGGAAACGCAGAATACGAAAGCGAAAAGAAGATCGAACAGGA-GA 443 consensus_9494#2 TTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGA 323 ** * ****** **** ***** * * **** ***** * * ** consensus_9494#0 AGAAAGAGAAAACAGTTGGGATTTTG-CCTATTT-GGCCAAACTGTTCTTGATGCTGCCG 429 consensus_9494#1 AGAAAGAGAAAACAGTTGGGATTTTGACCTATTTAGGCCAAACTGTTCTTGATGCTGCCG 503 consensus_9494#2 AAAAAGAGAACATTGCTCGGAAGAT----------------------------------- 348 * ******** * * * *** * consensus_9494#0 GTGAAAAGCCGTGGTATGATGTGCACCCTCGAACCCATCAGCATCATGAAAGCGAACGAA 489 consensus_9494#1 GTGAAAAGCCGTGGTATGATGTGCACCCTCGAACCCATCAGCATCATGA----------- 552 consensus_9494#2 ------------------------------------------------------------ consensus_9494#0 AAAAAAACAAAGAAGAACTGGAAATAAAGAAGAAAACGTTGGCTGACCCATTAACAGAAA 549 consensus_9494#1 ------------------------------------------------------------ consensus_9494#2 ------------------------------------------------------------ consensus_9494#0 TGAAGAAGGTTGAGGAGATGTTCAAACGCAGTAAGGAACTAAAAAGACAGAGCGAAGCAG 609 consensus_9494#1 ------------------------------------------------------------ consensus_9494#2 ------------------------------------------------------------ consensus_9494#0 CTGAACTCGAACGTGCCAGTGCTTGCATTCATGCTATGCCAAACTTATTTCCTGATGACA 669 consensus_9494#1 ------------------------------------------------------------ consensus_9494#2 ------------------------------------------------------------ consensus_9494#0 TAATGGTACCAAAGTGCCCATACAAAGAGGCTTCGAAAAGTCGGCGAACAGGAAGTAGGT 729 consensus_9494#1 ------------------------------------------------------------ consensus_9494#2 ------------------------------------------------------------ consensus_9494#0 ATAGTCAATCACTTACTGAAACTTCGTGTAATTCATTTGGGGAGCTAACGAAAGATTTAT 789 consensus_9494#1 ------------------------------------------------------------ consensus_9494#2 ------------------------------------------------------------ consensus_9494#0 CCACAGAGGTTTCTCTGAGTCCCGAAAGTATGGATAAAAAATCACATTTGATTGAAATGG 849 consensus_9494#1 ------------------------------------------------------------ consensus_9494#2 ------------------------------------------------------------ consensus_9494#0 CCAAGAGCTCAGACATTAATCGTCTTCGAGCTGAG 884 consensus_9494#1 ----------------------------------- consensus_9494#2 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||