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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 926 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCGTTACTTATAACTTTTTATTTTGTAACCATTTTGATATGTTATAGCGATAATACATCGATTTAAGTAGGACTTTATACGGGTACTGTCCCTCATGGGGTATGGTCCATAAACCAAACAGTCTTCGTAAATAAGGGTGCATTATCAGAATATGTATACATAGTTGATGAACTGAAGATGTACACCAATAGATCACAAATGCCTTT-GGAAAAAAGCTGCAACACGCGAAAAGAGTGAAATTTCCAACCCAA-CCAGCAAACCGCACAATATTATAAGGTAAAGGATCTGGTATCACAGAATTAGATTTCGGATTGAAGAACAGAGGCCGTCTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATGAAGGGAAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATCGAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCACAATGGGATTTGGATTATTCCTGTAACTGACGACTTCAATGGGTGACATCCATTTTCTTCGCATGTTTTAATGAAGAAACGT-----CAGTTGATTTTCAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTACTAAGTTTCGCTTGTATCATCTGTCGGTTTTGTTGACATTCAATTGCAATATGTGAAACTTTAGCTTGGTTCCTCTCAGCGTAAATATACAATGGAACAGCGACAACTGTTCGTACTAGGATAGCAGTGGTTGCAATTGTCAGTCCCCACGGCAATCCTAGCTGATCATGAACGCCGAGAAGAAGATTCGTTATCGTTTTTACGTGTAAACGATCAGGATGAAACAGTTCTTCGCTAATATAA]
[+] EMBL AI395627 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCGTTACTTATAACTTTTTATTTTGTAACCATTTTGATATGTTATAGCGATAATACATCGATTTAAGTAGGACTTTATACGGGTACTGTCCCTCATGGGGTATGGTCCATAAACCAAACAGTCTTCGTAAATAAGGGTGCATTATCAGAATATGTATACATAGTTGATGAACTGAAGATGTACACCAATAGATCACAAATGCCTTT GGAAAAAAGCTGCAACACGCGAAAAGAGTGAAATTTCCAACCCAA CCAGCAAACCGCACAATATTATAAGGTAAAGGATCTGGTATCACAGAATTAGATTTCGGATTGAAGAACAGAGGGCGTCCTAAACA ]
[+] EMBL AI395665 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCGTTACTTATAACTTTTTATTTTGTAACCATTTTGATATGTTATAGCGATAATACATCGATTTAAGTAGGACTTTATACGGGTACTGTCCCTCATGGGGTATGGTCCATAAACCAAACAGTCTTCGTAAATAAGGGTGCATTATCAGAATATGTATACATAGTTGATGAACTGAAGATGTACACCAATAGATCACAAATGCCTTT GGAAAAAAGCTGCAACACGCGAAAAGAGTGAAATTTCCAACCCAA CCAGCAAACCGCACAATATTATAAGGTAAAGGATCTGGTATCACAGAATT ]
[+] EMBL AI395516 [ TTTTTTTTTTTTTTTTTTTTAACCGTTACTTATAACTTTTTATTTTGTAACCATTTTGATATGTTATAGCGATAATACATCGATTTAAGTAGGACTTTATACGGGTACTGTCCCTCATGGGGTATGGTCCATAAACCAAACAGTCTTCGTAAATAAGGGTGCATTATCAGAATATGTATACATAGTTGATGAACTGAAGATGTACACCAATAGATCACAAATGCCTTT GGAAAAAAGCTGCAACACGCGAAAAGAGTGAAATTTCCAACCCAA CCAGCAAACCGCACAATATTATAAGGTAAAGGATCTGGTATCACAGAATTAGATTTCGGATTGAAGAACAGAGGCCGTCTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATGAAGGGAAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGg ]
[+] EMBL AI395167 [ TTTTTTTTTTTTTTTTAATCGTTACTTATAACTTTTTATTTTGTAACCATTTTGATATGTTATAGCGATAATACATCGATTTAAGTAGGACTTTATACGGGTACTGTCCCTCATGGGGTATGGT CATAAACCAAACAGTCTTCGTAAATAAGGGTGCATTAACAGAATATGTATACATAGTTGATGAACTGAAGATGTACACCAATAGATCACAAATGCCTTT GGAAAAAAGCTGCAACACCCCAAAAGAATGGAATTTTCAACCCAA CCAGCAAACCGCACAATATTATAAGGTAAAGGATCTGGTATCACAAAATTAGATTTCGG ]
[+] EMBL AI394803 [ TTTTTTTTTTTTTTTAATCGTTACTTATAACTTTTTATTTTGTAACCATTTTGATATGTTATAGCGATAATACATCGATTTAAGTATGACTTTATACGGGTACTGTCCCTCATGGGGTATGGTCCATAAACCAAACAGTCTTCGTAAATAAGGGTGCATTATCAAAATATGTATACATATTTAATAAACTGAAAATGTACCCCAATATATCAC AATTCCTTTGGGAAAAAACCT ]
[+] EMBL CD140432 [ CAACCCAA CCAGCAAACCGCACAATATTATAAGGTAAAGGATCTGGTATCACAGAATTAGATTTCGGATTGAAGAACAGAGGCCGTCTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATGAAGGGAAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATCGAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCACAATGGGATTTGGATTATTCCTGTAACTGACGACTTCAATGGGTGACATCCATTTTCTTCGCATGTTTTAATGAAGAAACGT CAGTTGATTTTCAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCA ]
[+] EMBL CD140407 [ CAACCCAATCCAGCAAACCGCACAATATTATAAGGTAAAGGATCTGGTATCACAGAATTAGATTTCGGATTGAAGAACAGAGGCCGTCTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATAAAGGGAAGCAGGGAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATCGAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCACAATGGGATTTGGATTATTCCTGTAACTGACGACTTCAATGGGTGACATCCATTTTCTTCGCATGTTTTAATGAAGAAACGT CAGTTGATTTTCAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTACTAAGTTTCGCTTGTATCATCTGTCGGTTTTGTTGACATTCAATTGCAATATGTGAAACTTTAGCTTG ]
[+] EMBL CD136479 [ CATTAGCCACCCCGGCTAACGTACATATGAAGGGAAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATCGAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCACAATGGGATTTGGATTATTCCTGTAACTGACGACTTCAATGGGTGACATCCATTTTCTTCGCATGTTTTAATGAAGAAACGTCTGAACAGTTGATTTTCAAGCAGAAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTACTAAGTTTCGC ]
[+] EMBL CD061696 [ agTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCACAATGGGATTTGGATTATTCCTGTAACTGACGACTTCAATGGGTGAGATCCATTTTCTTCGCATGTTTTAATGAAGAAACGTCTGAACAGGTGATTTACAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTACTAAGTTTCGCTTGTATCATCTGTCGGTTTTGTTGACATCCAATTGCAATATGTGAAACTTTAGCTTGGTTCCTCTCAGCGTAAATATACAATGGAACAGCGACAACTGTTCGTACTAGGATAGCAGTGGTTGCAATTGTCAGTCCCCACGGCAATCCTAGCTGATCATGAACGCCGAGAAGAAGATTCGTTATCGTTTTTACGTGTAAACGATCAGGATGAAACAGTTCTTCGCTAATATAA]
consensusID : consensus_9495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[CTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATGAAGGGAAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATCGAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCACAATGGGATTTGGATTATTCCTGTAACTGACGGCTTCAATGGGTGACATCCATTTTCTTCGCATGTTTTAATGAAGAAACATCTGAACTTGAAGTATGTATTTATTCAAAGAACCTTACCAGTTGATTTTCAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTACTAAGTTTCGCTTGTATCATCTGTCGGTTTTGTTGACATTCAATTGCATATGTGAAACTT]
[+] EMBL CD141209 [CTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATGAAGGGAAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATCGAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCACAATGGGATTTGGATTATTCCTGTAACTGACGGCTTCAATGGGTGACATCCATTTTCTTCGCATGTTTTAATGAAGAAACATCTGAACTTGAAGTATGTATTTATTCAAAGAACCTTACCAGTTGATTTTCAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTACTAAGTTTCGCTTGTATCATCTGTCGGTTTTGTTGACATTCAATTGCATATGTGAAACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9495#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCGTTACTTATAACTTTTTATT 60
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 TTGTAACCATTTTGATATGTTATAGCGATAATACATCGATTTAAGTAGGACTTTATACGG 120
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 GTACTGTCCCTCATGGGGTATGGTCCATAAACCAAACAGTCTTCGTAAATAAGGGTGCAT 180
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 TATCAGAATATGTATACATAGTTGATGAACTGAAGATGTACACCAATAGATCACAAATGC 240
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 CTTTGGAAAAAAGCTGCAACACGCGAAAAGAGTGAAATTTCCAACCCAACCAGCAAACCG 300
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 CACAATATTATAAGGTAAAGGATCTGGTATCACAGAATTAGATTTCGGATTGAAGAACAG 360
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 AGGCCGTCTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATGAAGGG 420
consensus_9495#1 -------CTTAAACACGCCAGTTCAACATTAGCCACCCCGGCTAACGTACATATGAAGGG 53
*****************************************************
consensus_9495#0 AAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATC 480
consensus_9495#1 AAGCAGGAAACCTGAGCACGGAACGTTGAGAGACGAATCGGCGATCAGATGATTGGAATC 113
************************************************************
consensus_9495#0 GAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCA 540
consensus_9495#1 GAATTGCGGATACAGTTGGAATCCGCTCAAGTATCTGATGGAGAATGTGAATGTGAGCCA 173
************************************************************
consensus_9495#0 CAATGGGATTTGGATTATTCCTGTAACTGACGACTTCAATGGGTGACATCCATTTTCTTC 600
consensus_9495#1 CAATGGGATTTGGATTATTCCTGTAACTGACGGCTTCAATGGGTGACATCCATTTTCTTC 233
******************************** ***************************
consensus_9495#0 GCATGTTTTAATGAAGAAACGTC------------------------------------- 623
consensus_9495#1 GCATGTTTTAATGAAGAAACATCTGAACTTGAAGTATGTATTTATTCAAAGAACCTTACC 293
******************** **
consensus_9495#0 AGTTGATTTTCAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTA 683
consensus_9495#1 AGTTGATTTTCAAGCAGTAATTGTTTCTTATTACTTATATTACGATAATACTCAGCATTA 353
************************************************************
consensus_9495#0 CTAAGTTTCGCTTGTATCATCTGTCGGTTTTGTTGACATTCAATTGCAATATGTGAAACT 743
consensus_9495#1 CTAAGTTTCGCTTGTATCATCTGTCGGTTTTGTTGACATTCAATTGCA-TATGTGAAACT 412
************************************************ ***********
consensus_9495#0 TTAGCTTGGTTCCTCTCAGCGTAAATATACAATGGAACAGCGACAACTGTTCGTACTAGG 803
consensus_9495#1 T----------------------------------------------------------- 413
*
consensus_9495#0 ATAGCAGTGGTTGCAATTGTCAGTCCCCACGGCAATCCTAGCTGATCATGAACGCCGAGA 863
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 AGAAGATTCGTTATCGTTTTTACGTGTAAACGATCAGGATGAAACAGTTCTTCGCTAATA 923
consensus_9495#1 ------------------------------------------------------------
consensus_9495#0 TAA 926
consensus_9495#1 ---
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||