These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9519#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1164 fasta sequence [AAATAAAAAAAAGAAGGTAAAAATAGCTGGCACCCCCACCCCAAACCCCCTTTACAACACATAGACAGACAGAAATTCATTTCTAACAAACATATGGCGTAAAGAAGAAGAAGAAGGGAAAAGGGGGGTTGTGTATTCAATAAAGTAATGGCAAGTTAACTCATTTAACAGTCTATATGCATATGGATATATATTTGATATTTAGGTAGGTATATGATATGAATGTCAGTGTGTATATATACATATACATACGCACTTACACACTGCACAACACACAAACATACATACACATATTTAGAAAGACAAAAAAAGCATATACATCTTTGGAACAATTAGGGTCATTGTGACCAAAAAAAGAAGAAAAACTATTCTAATCCATATACAACAGACATACATATTATCTAATTGCACAAACATACAACCCCCCCCCAAAAAAAAATGTAAAAAAAGCGTTGTTAATCTGTATTCAGAATGAATGAATGAATCAGTTAGCCAACAACAACAACAAAAAAACTCGAATGAAAAAGAGCAAAAAGAAAAAACACTGACGTTATTTCCCTCGTTTATAAAACATACTACTTATATTCCATCATTAGTAATGAATAAATAGNAGNAATCTATATATATATATATATATATATATATATATATATATATATATATATATAAAGTTATTAGAAAGAAAGGTGAGGGTGTATTAGTTCGTTAATTGATGGACATACAAACACACACATACACACGATACACATAGATTAAAGAAAGGCAGAAAAACAATCAATTGATCAATTCATCGATCGATCGATCAATTAATCAATCAATCAATAAAAAAAATCACTGAAGGATATGTCTTTATATTTCATTTGTCCAAGATGGATAGACAAACATATAAATGTATATGTGGTAATCTATATATATAATAAGAAAGACCAACACAAAGAGAGAGAGAGAGAGAGAAGAAACAAGAGAATAACCTAAAAAGATAGATGGATGGTAACAAACAACAACAACAACAAATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATGGAATAGAATGATTTAGAAATGATTGAGTTTGATATGGAATAGTAGACTGAGCTGACGCAGCCCATGGATTAGTGAATGAAGGAATCGCTCGGCGAAT] [+] EMBL CD073652 [AAATAAAAAAAAGAAGGTAAAAATAGCTGGCACCCCCACCCCAAACCCCCTTTACAACACATAGACAGACAGAAATTCATTTCTAACAAACATATGGCGTAAAGAAGAAGAAGAAGGGAAAAGGGGGGTTGTGTATTCAATAAAGTAATGGCAAGTTAACTCATTTAACAGTCTATATGCATATGGATATATATTTGATATTTAGGTAGGTATATGATATGAATGTCAGTGTGTATATATACATATACATACGCACTTACACACTGCACAACACACAAACATACATACACATATTTAGAAAGACAAAAAAAGCATATACATCTTTGGAACAATTAGGGTCATTGTGACCAAAAAAAGAAGAAAAACTATTCTAATCCATATACAACAGACATACATATTATCTAATTGCACAAACATACAACCCCCCCCCAAAAAAAAATGTAAAAAAAGCGTTGTTAATCTGTATTCAGAATGAATGAATGAATCAGTTAGCCAACAACAACAACAAAAAAACTCGAATGAAAAAGAGCAAAAAGAAAAAACACTGACGTTATTTCCCTCGTTTATAAAACATACTACTTATATTCCATCATTAGTAATGAATAAATAGNAGNAATCTATATATATATATATATATATATATATATATATATATATATATATATATAAAGTTATTA ] [-] EMBL CD079375 [ AAAAAGAGCAAAAAGAAAAAACNCTGACGTTATNTCCCTCGTTTATAAAACATACTACTTATATTCCATCATTAGTAATGAATAAATAGTAGTAATCTATATATATATATATATATATATATATATATATATATATATATATATATAAAGTTATTAGAAAGAAAGGTGAGGGTGTATTAGTTCGTTAATTGATGGACATACAAACACACACATACACACGATACACATAGATTAAAGAAAGGCAGAAAAACAATCAATTGATCAATTCATCGATCGATCGATCAATTAATCAATCAATCAATAAAAAAAATCACTGAAGGATATGTCTTTATATTTCATTTGTCCAAGATGGATAGACAAACATATAAATGTATATGTGGTAATCTATATATATAATAAGAAAGACCAACACAAAGAGAGAGAGAGAGAGAGAAGAAACAAGAGAATAACCTAAAAAGATAGATGGATGGTAACAAACAACAACAACAACAAATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATGGAATAGAATGATTTAGAAATGATTGAGTTTGATATGGAATAGTAGACTGAGCTGACGCAGCCCATGGATTAGTGAATGAAGGAATCGCTCGGCGAAT] consensusID : consensus_9519#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 486 fasta sequence [GAGAGAAGAAACAAGAGAATAACCTAAAAAGATAGATGGATGGTAACAAACAACAACAACAACAAATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATGGAATAGAATGATTTAGAAATGATTGAGTTTGATATGGAATAGTAGACTGAGCTGACGCAGCCCATGGATTAGTTGAATTGAATGGAATCGAAGCAGTTGGTTGATGATTAATACTAACTTGACCTATTATTTGATTCAAAGAAGGTGATTGATGAATATTTGAAACTCTTGACATTTGTTGATTAGATACCGTTGAAACTTGAGCACATGGCATAGTTCCAGACCAATTGATTGCAGATAAACTTCCATCAGGAGCACGATAAATAAGACCAGCTTGTGGAGATGAATAACTATCACAAATAGACAAATTTCCAGCTATTTGAGCAATTTTATCGTCTAATGAAATTAATGATTTTGACGGAACAGT] [+] EMBL CD197225 [GAGAGAAGAAACAAGAGAATAACCTAAAAAGATAGATGGATGGTAACAAACAACAACAACAACAAATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATGGAATAGAATGATTTAGAAATGATTGAGTTTGATATGGAATAGTAGACTGAGCTGACGCAGCCCATGGATTAGTTGAATTGAATGGAATCGAAGCAGTTGGTTGATGATTAATACTAACTTGACCTATTATTTGATTCAAAGAAGGTGATTGATGA ] [+] EMBL CD140709 [ GAGAAGAAACAAGAGAATAACCTAAAAAGATAGATGGATGGTAACAAACAACAACAACAACAAATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATGGAATAGAATGATTTAGAAATGATTGAGTTTGATATGGAATAGTAGACTGAGCTGACGCAGCCCATGGATTAGTTGAATTGAATGGAATCGAAGCAGTTGGTTGATGATTAATACTAACTTGACCTATTATTTGATTCAAAGAAGGTGATTGATGA ] [-] EMBL CD197176 [ AAAGATAGATGGATGGTAACAAACAACAACAACAACAAATTATGAAAGAAATGGATCATTATTAGTTGAACGATTAATTATCCCATTTAATGGAATAGAATGATTTAGAAATGATTGAGTTTGATATGGAATAGTAGACTGAGCTGACGCAGCCCATGGATTAGTTGAATTGAATGGAATCGAAGCAGTTGGTTGATGATTAATACTAACTTGACCTATTATTTGATTCAAAGAAGGTGATTGATGAA ] [+] EMBL CD179178 [ ACAGCAACAACAAATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATGGAATAGAATGATTTAGAAATGATTGAGTTTGATATGGAATAGTAGACTGAGCTGACGCAGCCCATGGATTAGTTGAATTGAATGGAATCGAAGCAGTTGGTTGATGATTAATACTAACTTGACCTATTATTTGATTCAAAGAAGGTGATTGATGAATATTTGAAACTCTTGACATTTGTTGATTAGATACCGTTGAAACTTGAGCACATGGCATAGTTCCAGACCAATTGATTGCAGATAAACTTCCATCAGGAGCACGATAAATAAGACCAGCTTGTGGAGATGAATAACTATCACAAATAGACAAATTTCCA ] [-] EMBL CD141236 [ tgaAATTGAATGGAATCGAAGCAGTTNGGCGATGATTAATACCAACTTGACCTATTATNTGATTCAAAGAAGGTGATTGATGAACATTTGAAACTCTTGACATTTGTTGATTAGATACCGTTGAAACTTGAACACATGGCATAGTTCCAGACCAATTGATTGCAGATAAACTTCCATCAGGAGCACGATAAATACGACCAGCTTGTGTAGATGAAAAACTATCACAAATAGACAAATTTCCAGCTATTTGAGCAATTTTATCGTCTAATGAAATTAATGATTTTGACGGAACAGT] consensusID : consensus_9519#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 408 fasta sequence [AGAGAAGAAACAAGAGAATAACCTAAAAAGATAGATGGATGGTAACAAACAACAACAACAACAAATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATGGAATAGAATGATTTAGAAATGATTGAGTTTGATATGGAATCTATAGAAATATAAACGAAATGAAAAAAAATTGAAAACTATGGATTATATAATAATAATACTGTGTATAGCTAAGGTTTATTAAAGCCTTGATCATACAAAAATTCAAACCCCCTCTTTGTGTGTGTGTGGGGTTAATGTCCCCCTTTATGTATTCAAAAAAAGGTTTGTTCCAGAGTGGTTAGGTGTCAAATATCATATGCTCATTAGTGACTGACTTTCAAGATACATGGTCCTGGAGTTCTAAAGAG] [-] EMBL CD170938 [AGAGAAGAAACAAGAGAATAACCTAAAAAGATAGATGGATGGTAACAAACAACAACAACAACAAATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATGGAATAGAATGATTTAGAAATGATTGAGTTTGATATGGAATCTATAGAAATATAAACGAAATGAAAAAAAATTGAAAACTATGGATTATATAATAATAATACTGTGTATAGCTAAGGTTTATTAAAGCCTTGATCATACAAAAATTCAAACCCCCTCTTTGTGTGTGTGTGGGGTTAATGTCCCCCTTTATGTATTCAAAAAAAGGTTTGTTCCAGAGTGGTTAGGTGTCAAATATCATATGCTCATTAGTGACTGACTTTCAAGATACATGGTCCTGGAGTTCTAAAGAG] [-] EMBL CD170954 [AGAGAAGAAACAAGAGAATAACCTAAAAAGATAGATGGATGGTAACAAACTACAACAACTACAAATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATGGAATAGAATGATTTAGAAATGATTGAGTTTGATATGGAATCTATAGAAATATAAACGAAATGAAAAAAAATTGAAAACTATGGATTATATAATAATAATACTGTGTATAGCTAAGGTTTATTAAAGCCTTGATCATACAAAAATTCTAACCCCCTCTTTGTGTGTGTGTGGGGTTAATGTCCCCCTTTATGTATTCAAAAAAAGGTTTGTTCCAGAGTGGTTAGGTGTCAAATATCATATGCTCATTAGTGACTGACTTTCAAGATACATGGTCCTGGAGTTCTAAAGAG] consensusID : consensus_9519#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [ATCACAAGAGCATGCAACAAATCACAAGAGAATAACCTAAAAAGATAGATGGATGGTAACAAACAACAACAACATCAAATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATGGAATAGAATGATTTAGAAATGATTGAGTTTGATATGGAATAGTAGACTGAGCTGACGCAGCCCATGGATTAGTTGAATTGAATGGAATCGAAGCAGTTGGTTGATGATTAATACTAACTTGACCTATTATTTAATTCAAAGAAGGTGATTGATGAATATTTGAAACTCTTGTGATT] [-] EMBL CD197372 [ATCACAAGAGCATGCAACAAATCACAAGAGAATAACCTAAAAAGATAGATGGATGGTAACAAACAACAACAACATCAAATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATGGAATAGAATGATTTAGAAATGATTGAGTTTGATATGGAATAGTAGACTGAGCTGACGCAGCCCATGGATTAGTTGAATTGAATGGAATCGAAGCAGTTGGTTGATGATTAATACTAACTTGACCTATTATTTAATTCAAAGAAGGTGATTGATGAATATTTGAAACTCTTGTGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9519#1 ------------------------------------------------------------ consensus_9519#3 ------------------------------------------------------------ consensus_9519#0 AAATAAAAAAAAGAAGGTAAAAATAGCTGGCACCCCCACCCCAAACCCCCTTTACAACAC 60 consensus_9519#2 ------------------------------------------------------------ consensus_9519#1 ------------------------------------------------------------ consensus_9519#3 ------------------------------------------------------------ consensus_9519#0 ATAGACAGACAGAAATTCATTTCTAACAAACATATGGCGTAAAGAAGAAGAAGAAGGGAA 120 consensus_9519#2 ------------------------------------------------------------ consensus_9519#1 ------------------------------------------------------------ consensus_9519#3 ------------------------------------------------------------ consensus_9519#0 AAGGGGGGTTGTGTATTCAATAAAGTAATGGCAAGTTAACTCATTTAACAGTCTATATGC 180 consensus_9519#2 ------------------------------------------------------------ consensus_9519#1 ------------------------------------------------------------ consensus_9519#3 ------------------------------------------------------------ consensus_9519#0 ATATGGATATATATTTGATATTTAGGTAGGTATATGATATGAATGTCAGTGTGTATATAT 240 consensus_9519#2 ------------------------------------------------------------ consensus_9519#1 ------------------------------------------------------------ consensus_9519#3 ------------------------------------------------------------ consensus_9519#0 ACATATACATACGCACTTACACACTGCACAACACACAAACATACATACACATATTTAGAA 300 consensus_9519#2 ------------------------------------------------------------ consensus_9519#1 ------------------------------------------------------------ consensus_9519#3 ------------------------------------------------------------ consensus_9519#0 AGACAAAAAAAGCATATACATCTTTGGAACAATTAGGGTCATTGTGACCAAAAAAAGAAG 360 consensus_9519#2 ------------------------------------------------------------ consensus_9519#1 ------------------------------------------------------------ consensus_9519#3 ------------------------------------------------------------ consensus_9519#0 AAAAACTATTCTAATCCATATACAACAGACATACATATTATCTAATTGCACAAACATACA 420 consensus_9519#2 ------------------------------------------------------------ consensus_9519#1 ------------------------------------------------------------ consensus_9519#3 ------------------------------------------------------------ consensus_9519#0 ACCCCCCCCCAAAAAAAAATGTAAAAAAAGCGTTGTTAATCTGTATTCAGAATGAATGAA 480 consensus_9519#2 ------------------------------------------------------------ consensus_9519#1 ------------------------------------------------------------ consensus_9519#3 ------------------------------------------------------------ consensus_9519#0 TGAATCAGTTAGCCAACAACAACAACAAAAAAACTCGAATGAAAAAGAGCAAAAAGAAAA 540 consensus_9519#2 ------------------------------------------------------------ consensus_9519#1 --------------------------------------------------------GAGA 4 consensus_9519#3 -------------------------------------------ATCACAAGAGCATGCAA 17 consensus_9519#0 AACACTGACGTTATTTCCCTCGTTTATAAAACATACTACTTATATTCCATCATTAGTAAT 600 consensus_9519#2 ---------------------------------------------------------AGA 3 consensus_9519#1 GAAGAAACAAGAGAATAACCTAAAAAGATAGATGGATGGTAACAAACAACAACAACAACA 64 consensus_9519#3 CAAATCACAAGAGAATAACCTAAAAAGATAGATGGATGGTAACAAACAACAACAACATCA 77 consensus_9519#0 GAATAAATAGNAGNA--ATCTATATATATATATATATATATATATATATATATATATATA 658 consensus_9519#2 GAAGAAACAAGAGAATAACCTAAAAAGATAGATGGATGGTAACAAACAACAACAACAACA 63 ** * * ** * * *** * * *** ** ** * * * * * * * consensus_9519#1 AATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATG--GAA 122 consensus_9519#3 AATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATG--GAA 135 consensus_9519#0 TAT-ATATATAAAGTTATTAGAAAGAAAGGTGAGGGTGTATTAGTTCGTTAATTGATGGA 717 consensus_9519#2 AATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATG--GAA 121 ** ** * ** * * * * * * * **** * ** * ** * * consensus_9519#1 TAGAATGATTTAGAAATGATTGAGTTTGATATGGAATAGTAGACTGAGCTGACGCAGCCC 182 consensus_9519#3 TAGAATGATTTAGAAATGATTGAGTTTGATATGGAATAGTAGACTGAGCTGACGCAGCCC 195 consensus_9519#0 CATACAAACACACACATACACACGATACACATAGATTAAAGAAAGGCAGAAAAACAATCA 777 consensus_9519#2 TAGAATGATTTAGAAATGATTGAGTTTGATATGGAATCTATAGAAATATAAACGAAATGA 181 * * * * * ** * * * ** ** * * * consensus_9519#1 ATGGATTAGTTGA---ATTGAATGGA-ATCGAAGCAGTTGGTTGATGATTAATACTA--- 235 consensus_9519#3 ATGGATTAGTTGA---ATTGAATGGA-ATCGAAGCAGTTGGTTGATGATTAATACTA--- 248 consensus_9519#0 ATTGATCAATTCATCGATCGATCGATCAATTAATCAATCAATCAATAAAAAAAATCACTG 837 consensus_9519#2 AAAAA--AATTGA--AAACTATGGATTATATAA-TAAT--AATACTGTGTATAGCTA--- 231 * * * ** * * * * * ** * * * * * consensus_9519#1 ----ACTTGACCTATTATTTGATTCAAAGAAGGTG-ATTGATGAATATTTGAAACTCT-T 289 consensus_9519#3 ----ACTTGACCTATTATTTAATTCAAAGAAGGTG-ATTGATGAATATTTGAAACTCT-T 302 consensus_9519#0 AAGGATATGTCTTTATATTTCATTTGTCCAAGATGGATAGACAAACATATAAATGTATAT 897 consensus_9519#2 ----AGGTTTATTAAAGCCTTGATCATACAAAAATTCAAACCCCCTCTTTGTGTGTGTGT 287 * * * * * ** * * * * * consensus_9519#1 GACATTTGTTGATTAGATACCGTTGAAACTTGAGCACATGGCATAGTTCCAGACCAATTG 349 consensus_9519#3 GTGATT------------------------------------------------------ 308 consensus_9519#0 GTGGTAATCTATATATATAATAA-GAAAGACCAACACAAAG-AGAGAGAGAGAGAGAGAA 955 consensus_9519#2 GGGGTTAATGTCCCCCTTTATGT----------ATTCAAAAAAAGGTTTGTTCCAGAGTG 337 * * consensus_9519#1 ATTGCAGATAAACTTCCATCAGGAGCACGATAAATAA-GACCAGCTTGTGGAGATGAATA 408 consensus_9519#3 ------------------------------------------------------------ consensus_9519#0 GAAACAAGAGAATAACC-TAAAAAGATAGATGGATGG-TAACAAACAACAACAACAACAA 1013 consensus_9519#2 GTTAGGTGTCAAATATCATATGCTCATTAGTGACTGACTTTCAAGATACATGGTCCTGGA 397 consensus_9519#1 ACTATCACAAATAGACAA-ATTTCCAGCTATTTGAGCAATTTTATCGTCTAATGAAATT- 466 consensus_9519#3 ------------------------------------------------------------ consensus_9519#0 ATTATGAAAGAAATGGATTATTATTAGTTGAACGATTAATTATCCCATTTAATGGAATAG 1073 consensus_9519#2 GTTCTAAAGAG------------------------------------------------- 408 consensus_9519#1 AATGATTTTGACGGAACAGT---------------------------------------- 486 consensus_9519#3 ------------------------------------------------------------ consensus_9519#0 AATGATTTAGAAATGATTGAGTTTGATATGGAATAGTAGACTGAGCTGACGCAGCCCATG 1133 consensus_9519#2 ------------------------------------------------------------ consensus_9519#1 ------------------------------- consensus_9519#3 ------------------------------- consensus_9519#0 GATTAGTGAATGAAGGAATCGCTCGGCGAAT 1164 consensus_9519#2 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||