cluster # 9531

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Schistosoma mansoni
cluster # 9531 cluster # 9531 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9531#0 length = 1044 sequences # 9

consensus_9531#1 length = 241 sequences # 1

consensusID : consensus_9531#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1044
fasta sequence

                              [GCTGATGCTTTGCTTGTAAAGTAGGTAGTTATGGCATTTGTATTGCGTGCGGCCATGCATTTTGGCTTAGTTCGTGCAGAACCATCTATGAAGCCCAGTTCAATCAGCTCAGTGACTGTATGGCCAAAGACACTATTTCCCGTTGAATTAGCACAAACTGTTACGTGGGTGTTTAGTCCAATTGGAGGTGCTGACTATGATGTAAACTCGGCCCTCAGTTTTGACATTGGTGGTCAAAGGGCTTACCGCGTTCAAAAGGACAAGTGTGGAGGTCCTTTAGAGAAATATTTCTCGTGCATTTACAAACCGCAAAACGAAATCTCGGTTACTTTCACAGCAGATGAATCCCATTATGGACAGCTGCTGCAA-G-TTTTTTACTATAAGGACATGTATTCCTTGTGGCTTGCAGATACACCTGCAATTTTCACCGAAACTATTCAGTTGATTAAACAACCTACATTTGTGAAAATGTCAATGGAATTAAAAGAGCCCTCTCGCTATATTCATAATGTACCAACCAATCTTCGCTTGGATCCCCCAATATTCCTTACAGGCTCTAATGTTCGGATTGACTGTTCGACAGATGGCTCGTTACCTCCAGCTCCAATAAGCTTCAGTATTGAATGTCCTCTCCCACCAACAGCTGTTGTTGAACACGATCGAGTCACTCAAGCTAAACAAAACTTAGCCTACGAAGTTTTTTATGCAGCTTATGGTTTTCGTTCCCCTCCAACACTAGCCGAGTTAGCTCCATATGTTGCACGAAAGAATGCTGATCAAATTCTACGTCTTGGTCATGTTTCATCCAGTAAAGATAATTTAACTTTGACAGCTCGTCTAACCATTAATGAAAAAGCACACGACTGTCATGTTGTTTGCCGTTTAGGTGGAAAAGAGACACGTCGTATATTGACAGTATACTATCCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTATGTTGTCCCTCCATCTATCTCAA]

[-] EMBL CD061034             [GCTGATGCTTTGCTTGTAAAGTAGGTAGTTATGGCATTTGTATTGCGTGCGGCCATGCATTTTGGCTTAGTTCGTGCAGAACCATCTATGAAGCCCAGTTCAATCAGCTCAGTGACTGTATGGCCAAAGACACTATTTCCCGTTGAATTAGCACAAACTGTTACGTGGGTGTTTAGTCCAATTGGAGGTGCTGACTATGATGTAAACTCGGCCCTCAGTTTTGACATTGGTGGTCAAAGGGCTTACCGCGTTCAAAAGGACAAGTGTGGAGGTCCTTTAGAGAAATATTTCTCGTGCATTTACAAACCGCAAAACGAAATCTCGGTTACTTTCACAGCAGATGAATCCCATTATGGACAGCTGCTGCAA GTTTTTTTACTATAAGGACATGTATTCCTTGTGGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD133301             [                                                                                                                                    CTATTTCCCGTTGAATTAGGACAAACTGTTACGTGGGTGTTTAGTCCAATTGGAGGTGCTGACTATGATGTAAACTCGGCCCTCAGTTTTGACATTGGTGGTCAAAGGGCTTACCGCGTTCAAAAGGACAAGTGTGGAGGTCCTTTAGAGAAATATTTCTCGTGCATTTACAAACCGCAAAACGAAATCTCGGTCACTTTCACAGCAGATGAATCCCATTATGGACAGCTGCTGCAA G TTTTTTACTATAAGGACATGTATTCCTTGTGGCTTGCAGATACACCTGCAATTTTCACCGAAACTATTCAGTTGATTAAACAACCTACATTTGTGAAAATGTCAATGGAATTAAAAGAGCCCTCTCGCTATATTCATAATGTACCAACCAATCTTCGCTTGGATCCCCCAATATTCCTTACAGGCTCTAATGTTCGGATTGACTGTTCGACAGATGGCTCGTTACCTCCAGCTCCAATAAGCTTCAGTATTGAATGTCCTC                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD128072             [                                                                                                                                                                                                      GATGTAAACTCGGCCCTCAGTTTTGACATTGGTGGTCAAAGGGCTTACCGCGTTCAAAAGGACAAGTGTGGAGGTCCTTTAGAGAAATATTTCTCGTGCATTTACAAACCGCAAAACGAAATCTCGGTTACTTTCACAGCAGATGAATCCCATTATGGACAGCTGCTGCAA G TTTTTTACTATAAGGACATGTATTCCTTGTGGCTTGCAGATACACCTGCAATTTTCACCGAAACTATTCAGTTGATTAAACAACCTACATTTGTGAAAATGTCAATGGAATTAAAAGAGCCCTCTCGCTATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD061033             [                                                                                                                                                                                                                             ttACAATGGTGGTCAAAGGGCTTTCCGCGTTCAAAAGGACAAGTGTGGAGGTCCTTTAGAGAAATATTTCTCGTGCATTTACAAACCGCAAAACGAAATCTCGGTTACTTTCACAGCAGATGAATCCCATTATGGGCCGCTTATGCAAGG TTTTTTAATATAAGGACATGTATTCCTTGTGGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD161286             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGATGGCTCGTTACCT CAGCTCCAATAAGCTTCAGTATTGAATGTCCTCTCCCACCAACAGCTGTTGTTGAACACGATCGAGTCACTCAAGCTAAACAAAACTTAGCCTACGAAGTTTTTTATGCAGCTTATGGTTTTC                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD122939             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAGTCACTCAAGCTAAACAAAACTTAGCCTACGAAGTTTTTTATGCAGCTTATGGTTTTCGTCCCCCTCCAACACTAGCCGAGTTAGCTCCATATGTTGCACGAAAGAATGCTGATCAAATTCTACGTCTTGGTCATGTTTCATCCAGTAAAGATAATTTAACTTTGACAGCTCGTCTAACCATTAATGAAAAAGCACACGACTGTCATGTTGTTTGCCGTTTAGGTGGAAAAGAGACACGTCGTATATTGACAGTATACTATTCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTATGTTGTCCCT             ]
[-] EMBL CD123153             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTCACTCAAGCTAAACAAAACTTAGCCTACGAAGTTTTTTATGCAGCTTATGGTTTTCGTTCCCCTCCAACACTAGCCGAGTTAGCTCCATATGTTGCACGAAAGAATGCTGATCAAATTCTACGTCTTGGTCATGTTTCATCCAGTAAAGATAATTTAACTTTGACAGCTCGTCTAACCATTAATGAAAAAGCACACGACTGTCATGTTGTTTGCCGTTTAGGTGGAAAAGAGACACGTCGTATATTGACAGTATACTATCCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTATGTTGTCCCTC            ]
[-] EMBL CD123071             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTCACTCAAGCTAAGCAAAACTTAGCCTACGAAGTTTTTTATGCAGCTTATGGTTTTCGTTCCCCTCCAACACTAGCCGAGTTAGCTCCATATGTTGCACGAAAGAATGCTGATCAAATTCTACGTCTTGGTCATGTTTCATCCAGTAAAGATAATTTAACTTTGACAGCTCGTCTAACCATTAATGAAAAAGCACACGACTGTCATGTTGTTTGCCGTTTAGGTGGAAAAGAGACACGTCGTATATTGACAGTATACTATCCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTATGTTGTCCCTC            ]
[-] EMBL BG930352             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCAAATTATACGTCTTGGTCATGTTTCATCCAGTAAAGATAATTTAACTTTGACAGCTCGTCTAACCATTAATGAAAAAGCACACGACTGTCATGTTGTTTGCCGTTTAGGTGGAAAAGAGACACGTCGTATATTGACAGTATACTATCCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGATTTATATATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTACGTTGACCCCCCATCTATCTCAA]




>consensus_9531#0
GCTGATGCTTTGCTTGTAAAGTAGGTAGTTATGGCATTTGTATTGCGTGCGGCCATGCAT
TTTGGCTTAGTTCGTGCAGAACCATCTATGAAGCCCAGTTCAATCAGCTCAGTGACTGTA
TGGCCAAAGACACTATTTCCCGTTGAATTAGCACAAACTGTTACGTGGGTGTTTAGTCCA
ATTGGAGGTGCTGACTATGATGTAAACTCGGCCCTCAGTTTTGACATTGGTGGTCAAAGG
GCTTACCGCGTTCAAAAGGACAAGTGTGGAGGTCCTTTAGAGAAATATTTCTCGTGCATT
TACAAACCGCAAAACGAAATCTCGGTTACTTTCACAGCAGATGAATCCCATTATGGACAG
CTGCTGCAAGTTTTTTACTATAAGGACATGTATTCCTTGTGGCTTGCAGATACACCTGCA
ATTTTCACCGAAACTATTCAGTTGATTAAACAACCTACATTTGTGAAAATGTCAATGGAA
TTAAAAGAGCCCTCTCGCTATATTCATAATGTACCAACCAATCTTCGCTTGGATCCCCCA
ATATTCCTTACAGGCTCTAATGTTCGGATTGACTGTTCGACAGATGGCTCGTTACCTCCA
GCTCCAATAAGCTTCAGTATTGAATGTCCTCTCCCACCAACAGCTGTTGTTGAACACGAT
CGAGTCACTCAAGCTAAACAAAACTTAGCCTACGAAGTTTTTTATGCAGCTTATGGTTTT
CGTTCCCCTCCAACACTAGCCGAGTTAGCTCCATATGTTGCACGAAAGAATGCTGATCAA
ATTCTACGTCTTGGTCATGTTTCATCCAGTAAAGATAATTTAACTTTGACAGCTCGTCTA
ACCATTAATGAAAAAGCACACGACTGTCATGTTGTTTGCCGTTTAGGTGGAAAAGAGACA
CGTCGTATATTGACAGTATACTATCCAACTACAATATCTTATTTATTGCCACGTCCTCGT
GAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCT
ATGTTGTCCCTCCATCTATCTCAA

consensusID : consensus_9531#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence

                              [GTTTAGGCACACAAATCTTAACTAATAGATTTGATCTTGGATTCCAATGCTAGCCACCATCCATCTTTGTTTAAAACTTATTGTGTTTATTTAAGCTTTAGCTTTATCCATAACTCATATATTTATGCCTTTGTAGATCCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTATGTTGT]

[+] EMBL CD114367             [GTTTAGGCACACAAATCTTAACTAATAGATTTGATCTTGGATTCCAATGCTAGCCACCATCCATCTTTGTTTAAAACTTATTGTGTTTATTTAAGCTTTAGCTTTATCCATAACTCATATATTTATGCCTTTGTAGATCCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTATGTTGT]




>consensus_9531#1
GTTTAGGCACACAAATCTTAACTAATAGATTTGATCTTGGATTCCAATGCTAGCCACCAT
CCATCTTTGTTTAAAACTTATTGTGTTTATTTAAGCTTTAGCTTTATCCATAACTCATAT
ATTTATGCCTTTGTAGATCCAACTACAATATCTTATTTATTGCCACGTCCTCGTGAAGGA
TTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCCACCGCCTATGTTG
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9531#0      GCTGATGCTTTGCTTGTAAAGTAGGTAGTTATGGCATTTGTATTGCGTGCGGCCATGCAT 60
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      TTTGGCTTAGTTCGTGCAGAACCATCTATGAAGCCCAGTTCAATCAGCTCAGTGACTGTA 120
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      TGGCCAAAGACACTATTTCCCGTTGAATTAGCACAAACTGTTACGTGGGTGTTTAGTCCA 180
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      ATTGGAGGTGCTGACTATGATGTAAACTCGGCCCTCAGTTTTGACATTGGTGGTCAAAGG 240
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      GCTTACCGCGTTCAAAAGGACAAGTGTGGAGGTCCTTTAGAGAAATATTTCTCGTGCATT 300
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      TACAAACCGCAAAACGAAATCTCGGTTACTTTCACAGCAGATGAATCCCATTATGGACAG 360
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      CTGCTGCAAGTTTTTTACTATAAGGACATGTATTCCTTGTGGCTTGCAGATACACCTGCA 420
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      ATTTTCACCGAAACTATTCAGTTGATTAAACAACCTACATTTGTGAAAATGTCAATGGAA 480
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      TTAAAAGAGCCCTCTCGCTATATTCATAATGTACCAACCAATCTTCGCTTGGATCCCCCA 540
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      ATATTCCTTACAGGCTCTAATGTTCGGATTGACTGTTCGACAGATGGCTCGTTACCTCCA 600
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      GCTCCAATAAGCTTCAGTATTGAATGTCCTCTCCCACCAACAGCTGTTGTTGAACACGAT 660
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      CGAGTCACTCAAGCTAAACAAAACTTAGCCTACGAAGTTTTTTATGCAGCTTATGGTTTT 720
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      CGTTCCCCTCCAACACTAGCCGAGTTAGCTCCATATGTTGCACGAAAGAATGCTGATCAA 780
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      ATTCTACGTCTTGGT---CATGTTTCATCCAGTAAAGATAAT-TTAACTTTGACAGCTCG 836
consensus_9531#1      -------GTTTAGGCACACAAATCTTAACTAATAGATTTGATCTTGGATTCCAATGCTAG 53
                             ** * **    **  * * * * * ** *  * ** **   **  *  *** *

consensus_9531#0      TCTAACCATTAATGAAAAAGCACACGACTGTCATGTT-GTTTGCCGTTTAGGTGGAAAAG 895
consensus_9531#1      CC--ACCATCCATCTTTGTTTAAA-ACTTATTGTGTTTATTTAAGCTTTAGCTTTATCCA 110
                       *  *****  **        * *    * *  ****  ***    ***** *  *    

consensus_9531#0      AGACACGTCGTATATTGACAGTATACTA--TCCAACTACAATATCTTATTTATTGCCACG 953
consensus_9531#1      TAAC---TCATATATTTATGCCTTTGTAGATCCAACTACAATATCTTATTTATTGCCACG 167
                        **   ** ****** *     *  **  ******************************

consensus_9531#0      TCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCC 1013
consensus_9531#1      TCCTCGTGAAGGATTTATCTATGTTGGGTCGGAGATAACGTGCTATGCAGACGGACACCC 227
                      ************************************************************

consensus_9531#0      ACCGCCTATGTTGTCCCTCCATCTATCTCAA 1044
consensus_9531#1      ACCGCCTATGTTGT----------------- 241
                      **************