cluster # 956

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Schistosoma mansoni
cluster # 956 cluster # 956 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_956#0 length = 666 sequences # 1

consensus_956#1 length = 480 sequences # 1

consensusID : consensus_956#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [CCAAAGGCTGATGTGAAAGTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAGGGTGGTCTGAAGATTGGTGGAGGTGCTGGTGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGGACTGACTGGGAAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTCGGTTGGGGTTCGGTCTGGGCAAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGAAAGTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAGGGTGGTCTGAAAATTGGTGGANGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCAACTCGATGTACTCATGGAGGTTTCCGATGTTGATGTGTNCTGCTCTGGGCCCGAAATCGTGTTTCA]

[+] EMBL CD201431             [CCAAAGGCTGATGTGAAAGTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAGGGTGGTCTGAAGATTGGTGGAGGTGCTGGTGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGGACTGACTGGGAAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTCGGTTGGGGTTCGGTCTGGGCAAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGAAAGTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAGGGTGGTCTGAAAATTGGTGGANGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCAACTCGATGTACTCATGGAGGTTTCCGATGTTGATGTGTNCTGCTCTGGGCCCGAAATCGTGTTTCA]




>consensus_956#0
CCAAAGGCTGATGTGAAAGTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGT
TTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCT
AAGTTCGGGTTGCCGAAGGGTGGTCTGAAGATTGGTGGAGGTGCTGGTGGTGTGGATGTA
TCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCC
TCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGGACTGACT
GGGAAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTC
GGTTGGGGTTCGGTCTGGGCAAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGA
AAGTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAG
ATGGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGA
AGGGTGGTCTGAAAATTGGTGGANGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCA
ACTCGATGTACTCATGGAGGTTTCCGATGTTGATGTGTNCTGCTCTGGGCCCGAAATCGT
GTTTCA

consensusID : consensus_956#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [GTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAGGGTGGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGGACTGACTGGGAAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTCGGTTGGGGCTCGAAAGGCAAGAAGGCGAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGTTTGGATGTGTCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCC]

[+] EMBL CD185900             [GTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAGGGTGGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGGACTGACTGGGAAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTCGGTTGGGGCTCGAAAGGCAAGAAGGCGAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGTTTGGATGTGTCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCC]




>consensus_956#1
GTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGAT
GGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAG
GGTGGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAA
CTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCCTCTGGGCCCGAAATCGGT
GTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGGACTGACTGGGAAGGTTTGTTCACCC
GATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTCGGTTGGGGCTCGAAAGGC
AAGAAGGCGAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGTTTGGAT
GTGTCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_956#0      CCAAAGGCTGATGTGAAAGTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGT 60
consensus_956#1      ------------------GTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGT 42
                                       ******************************************

consensus_956#0      TTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCT 120
consensus_956#1      TTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCT 102
                     ************************************************************

consensus_956#0      AAGTTCGGGTTGCCGAAGGGTGGTCTGAAGATTGGTGGAGGTGCTGGTGGTGTGGATGTA 180
consensus_956#1      AAGTTCGGGTTGCCGAAGGGTGGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGATGTA 162
                     ********************************************** *************

consensus_956#0      TCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCC 240
consensus_956#1      TCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCC 222
                     ************************************************************

consensus_956#0      TCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGGACTGACT 300
consensus_956#1      TCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGGACTGACT 282
                     ************************************************************

consensus_956#0      GGGAAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTC 360
consensus_956#1      GGGAAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTC 342
                     ************************************************************

consensus_956#0      GGTTGGGGTTCGGTCTGGGCAAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGA 420
consensus_956#1      GGTTGGGGCTCGAA--AGGCAAGAAGGCGAAGAAGGTGAAGTTGCCCACAGTGTCGGGAG 400
                     ******** ***     *********  ** *** ******   ** *  *     *   

consensus_956#0      AAGTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAG 480
consensus_956#1      ACGTGGATGCTGGTTTGGATGTGTCTCT---TCCGAAACCCGAACTCGATGTCTCCATGG 457
                     * ***** * ***    * ** *    *   *  * *  ***   * ** *    * * *

consensus_956#0      ATGGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGA 540
consensus_956#1      AGGTT----CCCGATGTTGATGTGTCC--------------------------------- 480
                     * * *    *  **    ** **                                     

consensus_956#0      AGGGTGGTCTGAAAATTGGTGGANGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCA 600
consensus_956#1      ------------------------------------------------------------
                                                                                 

consensus_956#0      ACTCGATGTACTCATGGAGGTTTCCGATGTTGATGTGTNCTGCTCTGGGCCCGAAATCGT 660
consensus_956#1      ------------------------------------------------------------
                                                                                 

consensus_956#0      GTTTCA 666
consensus_956#1      ------