These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 978 fasta sequence [CTCGCAGGCCANAATTCGGCACGAGGGGCTCTAGTATTCTAGGAGCAGCCGTCAAAGTACCTCGTATTCGTACAAAAAATTTAGTTAGCATTATTTTCTGCGAAGCTGTTGCAATTTATGGGATTATTACAGCTATTATTATGCTAAGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACATCGAGCTGGTTATGCAATGTTTTGTAATCTTATCTGTGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTCTGGCAGATGCTGCAAATTCTGCATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAATAATNNNNNNNNNNNNNNNNNATTCTGGCAAGAAAATTTCTGATAAAGGTTGAAGAGTACGTAAGACTGGAGACTAAACGAACACTATTCCGTCTCACT---CTACTACTACTTATACCTTAGTTTTTCTCATGATA--CTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTTTGCGTATCGGCTGTGTTGCTAAACTCTCTCCTCTTTCTCTCTCTTTCCACCAATTTTCTATTTTGTTTTTTCGAAAATGTCCGTCTAATATGATTAGTTG-AAAAG-AAAATTGATTCATTTCTAACTCAGTGAATAGTATTTGTTACCTGTGTCATATTTATGATCGAAATATCGATTTATGTTTTCGTTCCTCTTATCATTTGATACATATATGTGTTACAATTCAATGCATAATATTTGATATCATTATTGTTATGATTAACAATTAACCAAACATGATAGCGATGTGTTTTACTCTATCACGCTGTTATGCTATTCATATTCCTTTCATTGTGTGTGTGCGTATGTGTTGATTAAATAAATATTTATTTTTTAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCATGCAGCTGCATTACCGTACTGCGTA] [+] EMBL CD080944 [CTCGCAGGCCANAATTCGGCACGAGGGGCTCTAGTATTCTAGGAGCAGCCGTCAAAGTACCTCGTATTCGTACAAAAAATTTAGTTAGCATTATTTTCTGCGAAGCTGTTGCAATTTATGGGATTATTACAGCTATTATTATGCTAAGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACATCGAGCTGGTTATGCAATGTTTTGTAATCTTATCTGTGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTCTGGCAGATGCTGCAAATTCTGCATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAATAATNNNNNNNNNNNNNNNNNATTCTGGCAAGAAAATTTCTGATAAAGGTTGAAGAGTACGTAAGACTGGAGACTAAACGAACACTATTCCGTCTCACT CTACTACTACTTATACCTTAGTTTTTCTCATGATA CTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTTTGCGTATCGGCTGTGTTGCTAAACTCTCTCCTCTTTCTCTCTCTTTCCACCAATTTTCTATTTTGTTTTTTCGAAAATGTCCGTCTAATATGATTAGTTG AAAAG AAAATTGATTCATTTCTAACTCAGTGAATAGTATTTGTTACTTGTGTCATAT ] [-] EMBL AI977684 [ CTATTCCGTCTCACTCTACTACTACTACTTATACCTTAGTTTTTCTCATGATACTCTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTTTGCGTATCGGCTGTGTTGCTAAACTCTCTCCTCTTTCTCTCTCTTTCCACCAATTTTCTATTTTGTTTTTTCGAAAATGTCCGTCTAATATGATTAGTTGAAAAAA AAAATTGATTCATTCCTAACTCAGTGAATAGTATTTGTTACCTGTGTCATATTTATGATCGAAATATCGATTTATGTTTTCGTTCCTCTTATCATTTGATACATATATGTGTTACAATTCAATGCATAATATTTGATATCATTATTGTTATGATTAACAATTAACCAAACATGATAGCGATGTGTTTTACTCTATCACGCTGTTATGCTATTCATATTCCTTTCATTGTGTGTGTGCGTATGTGTTGATTAAATAAATATTTATTTTTTAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCATGCAGCTGCATTACCGTACTGCGTA] [-] EMBL AI977406 [ TCACT ATACTACTACTTATACCTTAGTTTTTCTCATGATA CTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTTTGCGTATCGGCTGTGATGCTAAACTCTCTCCTCTTTCTCTCTCTTTCCACCAATTTTTTATTTTGTTTTTTCGAAAATGTCCGTCTAATATGATTAGTTG AAAAGAAAAATTGATTCATTTCTAACTCAGTGAATAGTATTTGTTACATGTGTCATATTTATGATCGAAATATCGATTTATGTTTTCGTTCCTCTTATCATTTGATACATATATGTGTTACAATTCAATGCATAATATTTGATATCATTATTGTTATGATTAACAATTAACCAAACATGATAGCGATGTGTTTTACTCTATCACGCTGTTATGCTAATCATATTCCTTTCATTGTGTGTGTGCGTATGTGTTGATTAAATAAATATTTAT ] consensusID : consensus_9560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 812 fasta sequence [GGGAGTTTGGATTTACTTGGAAATGGCCTGCACAAAACTAAACGTGTATTATATACCAACATACACAGCGATCTCCGTTTTTATCTTGATAGGTCTTTATTATATTCTGAGTGGTGAAGGCCATAGATTCGATATAGGATGGGTTTTATCTGAAACATCACCCTACCTATGGGC-TGCAATGGGTATTGGTTTAGCTATCTCCCCTTCAGTGGTTGGAGCTGCTTGGGGCATCTATATAACAGGCTCTAGTATTCTAGGAGCAGCCGTCAAAGCACCTCGTATTCGTACAAAAAATTTAGTTAGCATTATTTTCTGCGAAGCTGTTGCAATTTATGGGATTATTACAGCTATTATTATGCTAAGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACATCGAGCTGGTTATGCAATGTTTGCGGCTGGATTGA-CTGTTGGTTTTTGTAATCTTATCTGTGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTTTGGCAGATGCTGCAAATTCTGCATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAATAATTGTAGCTATTCTTCAAATTTCTGGCAAGAAAATTTCTGATAAAGGTTGAAGAGTACGTAAGACTGGAGACTAAACGAACACTATTCCGTTTCACTCTACTACTACTTATACCTTAGTTTTTCTCATGATACTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTTTGCGTATCGGCAGTACTGGGTAACTCTCTCCT] [+] EMBL CD077616 [GGGAGTTTGGATTTACTTGGAAATGGCCTGCACAAAACTAAACGTGTATTATATACCAACATACACAGCGATCTCCGTTTTTATCTTGATAGGTCTTTATTATATTCTGAGTGGTGAAGGCCATAGATTCGATATAGGATGGGTTTTATCTGAAACATCACCCTACCTATGGGCNTGC ATGGGTATTGGGTTAGCTATCTCC ] [+] EMBL CD146628 [ TGGGTGGTGAAGGCCATAGATTCGATATAGGATGGGTTTTATCTGAAACATCGCCCTACCTATGGGC TGCAATGGGTATTGGTTTAGCTATCTCCCCTTCAGTGGTTGGAGCTGCTTGGGGCATCTATATAACAGGCTCTAGTATTCTAGGAGCAGCCGTCAAAGCACCTCGTATTCGTACAAAAAATTTAGTTAGCATTATTTTCTGCGAAGCTGTTGCAATTTATGGGATTATTACAGCTATTATTATGCTAAGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACATCGAGCTGGTTATGCAATGTTTGCGGCTGGATTGA CTGTTGGTTTTTGTAATCTTATCTG ] [-] EMBL CD167196 [ AATGGGTATTGGTTTAGCTATCTCCCTTTCAGTGGTTGGAGCTGCTTGGGGCATCTATATAACAGGCTCTAGTATTCTAGGAGCGGCCGTCAAAGCACCTCGTATTCGTACAAAAAATTTGGTTAGCATTATTTTCTGCGAAGCTGTTGCAATTTATGGGATTATTACGGCTATTATTATGCTATGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACATCGAGCTGGTTATGCAATGTTTGC GCTGGATTGACCTGTTGTTT ] [-] EMBL CD129821 [ TTATGATAAGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACATCGAGCTGGTTATGCAATGTTTGCGGCTGGATTGA CTGTTGGTTTTTGTAATCTTATCTGTGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTTTGGCAGATGCTGCAAATTCTGCATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAATAATTGTAGCTATTCTTCAAATTTCTGGCAAGAAAATTTCTGATAAAGGTTGAAGAGTACGTAAGACTGGAGACTAAACGAACACTATTCCGTTTCACTCTACTACTACTTATACCTTAGTTTTTCTCATGATA CTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTTTGCGTATCGGCAGTACTGGGT ] [+] EMBL CD178717 [ GCCATTATTCGTCAAGCACATCGAGCTGGTTATGCAATGTTTGCGGCTGGATTGA CTGTTGGTTTTTGTACTCTTATCTGTGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTTTGGCAGATGCTGCAAATTCTGCATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAATAATTGTAGCTATTCTTCAAATTTCTGGCAAGAAAATTTCTGATAAAGGTTGAAGAGTACGTAAGACTGGAGACTAAACGAACACTATTCCGTTTCACTCTACTACTACTTATACCTTAGTTTTTCTCATGATACTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTTTGCGTATCGGCTGTGTTGCTAAACTCTCTCCT] [+] EMBL CD166446 [ CTGGATTGA CTGTTGGTTTTTGTAATCTTATCTGTGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTTTGGCAGATGCTGCAAATTCTGCATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAATAATTGTAGCTATTCTTCAAATTTCTGGCAGGAAAATTTCTGATAAAGGTTGAAGAGTACGTAAGACTGGAGACTAAACGAACACTATTCCGTTTCACTCTACTACTACTTATACCTTAGTTTTTCTCATGATACTCTCTCTCTCTCCACATGTGTTACCA TTTTTTAAAATTTAAGTTTTGCGT ] consensusID : consensus_9560#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 108 fasta sequence [CATGCGGCCGCGGGATTCGATTGGGGAAAGCACATCCCACGACGGACCGACACATATACCACAGATAGATTACAAAAACCAACAGTCAATCCAGCCGCAAACATTGCA] [+] EMBL CD191983 [CATGCGGCCGCGGGATTCGATTGGGGAAAGCACATCCCACGACGGACCGACACATATACCACAGATAGATTACAAAAACCAACAGTCAATCCAGCCGCAAACATTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9560#0 ------------------------------------------------------------ consensus_9560#1 GGGAGTTTGGATTTACTTGGAAATGGCCTGCACAAAACTAAACGTGTATTATATACCAAC 60 consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 ------------------------------------------------------------ consensus_9560#1 ATACACAGCGATCTCCGTTTTTATCTTGATAGGTCTTTATTATATTCTGAGTGGTGAAGG 120 consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 ------------------------------------------------------------ consensus_9560#1 CCATAGATTCGATATAGGATGGGTTTTATCTGAAACATCACCCTACCTATGGGCTGCAAT 180 consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 ----------------------------------CTCGCAGGCCANAAT-TCGGCACGAG 25 consensus_9560#1 GGGTATTGGTTTAGCTATCTCCCCTTCAGTGGTTGGAGCTGCTTGGGGCATCTATATAAC 240 consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 GGGCTCTAGTATTCTAGGAGCAGCCGTCAAAGTACCTCGTATTCGTACAAAAAATTTAGT 85 consensus_9560#1 AGGCTCTAGTATTCTAGGAGCAGCCGTCAAAGCACCTCGTATTCGTACAAAAAATTTAGT 300 consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 TAGCATTATTTTCTGCGAAGCTGTTGCAATTTATGGGATTATTACAGCTATTATTATGCT 145 consensus_9560#1 TAGCATTATTTTCTGCGAAGCTGTTGCAATTTATGGGATTATTACAGCTATTATTATGCT 360 consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 AAGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACA 205 consensus_9560#1 AAGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACA 420 consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 TCGAGCTGGTTATGCAATGTTT------------------------TGTAATCTTATCTG 241 consensus_9560#1 TCGAGCTGGTTATGCAATGTTTGCGGCTGGATTGACTGTTGGTTTTTGTAATCTTATCTG 480 consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 TGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTCTGGCAGATGCTGCAAATTCTGC 301 consensus_9560#1 TGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTTTGGCAGATGCTGCAAATTCTGC 540 consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 ATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAAT 361 consensus_9560#1 ATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAAT 600 consensus_9560#2 -------------------------------------CATGCGGCCGCGGGATTCGATTG 23 *** * * *** * consensus_9560#0 AATNNNNNNNNNNNNNNNNNATTCTGGCAAGAAAATTTCTGATAAAGGTTGAAGAGTACG 421 consensus_9560#1 AATTGTAGCTATTCTTCAAATTTCTGGCAAGAAAATTTCTGATAAAGGTTGAAGAGTACG 660 consensus_9560#2 GGGAAAGCACATCCCACGACGGACCGACACATATACCACAGATAGATTACAAAAACCAAC 83 * * ** * * * **** * ** * * consensus_9560#0 TAAGACTGGAGACTAAACGAACACTATTCCGTCTCACTCTACTACTACTTATACCTTAGT 481 consensus_9560#1 TAAGACTGGAGACTAAACGAACACTATTCCGTTTCACTCTACTACTACTTATACCTTAGT 720 consensus_9560#2 AGTCAATCCAGCC---GCAAACATTGCA-------------------------------- 108 * * ** * * **** * consensus_9560#0 TTTTCTCATGATACTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTT 541 consensus_9560#1 TTTTCTCATGATACTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTT 780 consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 TGCGTATCGGCTGTGTTGCTAAACTCTCTCCTCTTTCTCTCTCTTTCCACCAATTTTCTA 601 consensus_9560#1 TGCGTATCGGCAGTACTGGGTAACTCTCTCCT---------------------------- 812 consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 TTTTGTTTTTTCGAAAATGTCCGTCTAATATGATTAGTTGAAAAGAAAATTGATTCATTT 661 consensus_9560#1 ------------------------------------------------------------ consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 CTAACTCAGTGAATAGTATTTGTTACCTGTGTCATATTTATGATCGAAATATCGATTTAT 721 consensus_9560#1 ------------------------------------------------------------ consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 GTTTTCGTTCCTCTTATCATTTGATACATATATGTGTTACAATTCAATGCATAATATTTG 781 consensus_9560#1 ------------------------------------------------------------ consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 ATATCATTATTGTTATGATTAACAATTAACCAAACATGATAGCGATGTGTTTTACTCTAT 841 consensus_9560#1 ------------------------------------------------------------ consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 CACGCTGTTATGCTATTCATATTCCTTTCATTGTGTGTGTGCGTATGTGTTGATTAAATA 901 consensus_9560#1 ------------------------------------------------------------ consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 AATATTTATTTTTTAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCATGCAGCTG 961 consensus_9560#1 ------------------------------------------------------------ consensus_9560#2 ------------------------------------------------------------ consensus_9560#0 CATTACCGTACTGCGTA 978 consensus_9560#1 ----------------- consensus_9560#2 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||