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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 720 fasta sequence
[TATCTTACGTCCAACCGAAAAATTATTGAAAACAGGAAGTTTATCTGAAAATAATTATCATTTGCAATGTACATGTGGCTTGATCGATGAAATAAGCTATTTTAATCCAAAAAGGCAATAGTT-CAAGTGACAAGTGTAAAAAGCAGGACTTGTAGAACGTTTATGTGCTGGAAAACAATGAATCCCTTAGAATCAAACAAATCGGTCAAGAATGAAAATATGGCAAACGATGAAAAAGCTAAATTGAGATACAGAGGTCTGAAAAGTATAGCACAAAGCAGCTACATAAAGATAATTACAATCTTTTGCGTCCTGTGATGATACCAAGACGTTTGTAAAACTTTAGAAAAATAATAAAATTACAAAACACAACCAAACCGAGACAAAACAGAGACAGAGGAATTGAAGGTGCATGCGACATTTGTCTTAATTTGGCGTTACGTTCCTGGAGGTCAATCCTAAGTGCATAATATTGTGTAATAGAACCCAATGCACCGAAAATGTGAAATATTTGATGACTATGACCGAAAACATCGAACCTTCCAGGAAAAAGCCTTTCAGGAAAGTGTGAGACAAACAAAAATCCTGCAGAAAGCATTGACATGAAGTGCAAGTTCCAATAATAAAGTGAACTACATTCAGAAGACTCATATTCACTTGCCATGTACTTACAGGTATATGAACGCCACAGAAATC-GAGTCCCGACGTAAAACAAAATAA]
[-] EMBL CD129382 [TATCTTACGTCCAACCGAAAAATTATTGAAAACAGGAAGTTTATCTGAAAATAATTATCATNTGCAATGTACATGTGGCTTGATCGATGAAATAAGCTATTTTAATCCAAAAAGGCAATAGTT CAAGTGACAAGTGTAAAAAGCAGGACTTGTAGAACGTTTATGTGCTGGAAAACAATGAATCCCTTAGAATCAAACAAATCGGTCAAGAATGAAAATATGGCAAACGATGAAAAAGCTAAATTGAGATACAGAGGTCTGAAAAGTATAGCACAAGGCAGCTACATAAAGATAATTACAATCTTTTGCGTCCTGTGATGATACCAAGACGTTTGTAAAACTTTAGAAAAATAATAAAATTACAAAACACAACCAAACCGAGACAAAACAGAGACAGAGGAATTGAAGGTGCATGCGACATTTGTCTTAATTTGGCGTTACGTTCCTGGAGGTCAATCCTAAGTGCATAATATTGTGTAATAGAACCCAATGCACCGAAAATGTGAAATATTTGATGACTATGACCGAAAACATCGAACCTTCCAGGAAAAAGCCTTTCAGGAAAGTGTGAGACAAACAAAAATCCTGCAGAAAGCATTGACATGAAGTGCAAGTTCCAATAATAAAGTGAACTGCATTCAGAAGACTCAT ]
[+] EMBL CD074891 [ AAGTTTATCTGAAAATAATTATCATTTGCAATGTACATGTGGCTTGATCGATGAAATAAGCTATTTTAATCCAAAAAGGCAATAGTT CAAGTGACAAGTGTAAAAAGCAGGACTTGTAGAACGTTTATGTGCTGGAAAACAATGAATCCCTTAGAATCAAACAAATCGGTCAAGAATGAAAATATGGCAAACGATGAAAAAGCTAAATTGAGATACAGAGGTCTGAAAAGTATAGCACAAAGCAGCTACATAAAGATAATTACAATCTTTTGCGTCCTGTGATGATACCAAGACGTTTGTAAAACTTTAGAAAAATAATAAAATTACAAAACACAACCAAACCGAGACAAAACAGAGACAGAGGAATTGAAGGTGCATGCGACATTTGTCTTAATTTGGCGTTACGTTCCTGGAGGTCAATCCTAAGTGCATAATATTGTGTAATAGAACCCAATGCACCGAAAATGTGAAATATTTGATGACTATGACCGAAAACATCGAACCTTCCAGGAAAAAGCCTTTCAGGAAAGTGTGAGACAAACAAAAATCCTGCAGAAAGCATTGACATGAAGTGCAAGTTCCAATAATAAAGTGAACTACATTCAGAAGACTCATATTCACTTGCCATGTACTTACAGGTATATGAACGCCACAGAAATC GA ]
[+] EMBL CD168285 [ TGAAAATAATTATCATTTGCAATGTACATGTGGCTTGATCGATGAAATAAGCTATTTTAATCCAAAAAGGCAATAGTT CAAGTGACAAGTGTAAAAAGCAGGACTTGTAGAACGTTTATGTGCTGGAAAACAATGAATCCCTTAGAATCAAACAAATCGGTCAAGAATGAAAATATGGCAAACGATGAAAAGGCTAAATTGAGATACAGAGGTCTGAAAAGTATAGCACAAAGCAGCTACATAAAGATAATTACAATCTTTTGCGTCCTGTGATGATACCAAGACGTTTGTAAAACTTTAGAAAAATAATAAAATTACAAAACACAACCAAACCGAGACAAAACAGGGACAGAGGAATTGAAGGTGCATGCGACATTTGTCTTAATTTGGCGTTACGTTCCTGGAGGTCAATCCTAAGTGCATAATATTGTGTAATAGAACCCAATGCACCGAAAATGTGAAATATTTGATGACTATGACCGAAAACATCGAACCTTCCAGGAAAAAGCCTTTCAGGAAAGTGTGAGACAAACAAA ]
[-] EMBL SM6271 [ AATAATTATCATTTGCAATGTACATGTGGCTTGATCGATGAAATAAGCTATTTTAATCCANCAAGGCAATAGTTNCAAGTGACAAGTGTAAAAAGCAGGACTTGTAGAACGTTTATGTGCTGGAAAACAATGAATCCCTTAGAATCAAACAAATCGGTCAAGAATGAAAATATGNCAAACGATGAAAAAGCTAAATTGAGATACAGAGGTCTGNNAAGTATANCACAAANCAGCTA ]
[+] EMBL CD139235 [ TATGTGCTGGAAAACAATGAATCCCTTAGAATCAAACAAATCGGTCATGAATGAAAATATGGCAAACGATGAAAAAGCTAAATTGAGATACAGAGGTCTGAAAAGTATAGCACAAAGCAGCTACATAAAGATAATTACAATCTTTTGCGTCCTGTGATGATACCAAGACGTTTGTAGAACTTTAGAAAAATAATAAAATTACAAAACACAACCAAACCAAGACAAAACAGAGACAGAGGAATTGAAGGTGCATGCGACATTTGTCTTAATTTGGCGTTACGTTCCTGGAGGTCAATCCTAAGTGCATAATAT ]
[+] EMBL CD201734 [ GTATAGCACAAAGCAGCTACATAAAGATAATTACAATCTTTTGCGTCCTGTGATGATACCAAGACGTTTGTAAAACTTTAGAAAAATAATAAAATTACAAAACACAACCAAACCGAGACAAAACAGAGACAGAGGAATTGAAGGTGCATGCGACATTTGTCTTAATTTGGCGTTACGTTCCTGGAGGTCAATCCTAAGTGCATAATATTGTGTAATAGAACCCAATGCACCGAAAATGTGAAATATTTGATGACTATGACCGAAAACATCGAACCTTCCAGGAAAAAGCCTTTCAGGAAAGTGTGAGACAAACAAAAATCCTGCAGAAAGCATTGACATGAAGTGCAAGTTCCAATAATAAGGTGAACTACATTCAGAAGACTCATATTCACTTGCCATGTACTTACAGGTATATGAACGCCACAG AATCGGAGTCCCGACGTAAAACAAAATA ]
[-] EMBL CD201726 [ TATAGCACAAAGCAGCTACATAAAGATAATTACAATCTTTTGCGTCCTGTGATGATACCAAGACGTTTGTAAAACTTTAGAAAAATAATAAAATTACAAAACACAACCAAACCGAGACAAAACAGAGACAGAGGAATTGAAGGTGCATGCGACATTTGTCTTAATTTGGCGTTACGTTCCTGGAGGTCAATCCTAAGTGCATAATATTGTGTAATAGAACCCAATGCACCGAAAATGTGAAATATTTGATGACTATGACCGAAAACATCGAACCTTCCAGGAAAAAGCCTTTCAGGAAAGTGTGAGACAAACAAAAATCCTGCAGAAAGCATTGACATGAAGTGCAAGTTCCAATAATAAAGTGAACTGCATTCAGAAGACTCATATTCACTTGCCATGTACTTACAGGTATATGAACGCCACAG AATCGGAGTCCCGACGTAAAACAAAATAA]
[-] EMBL CD201820 [ TGAAGGTGCATGCGACATTTGTCTTAATTTGGCGTTACGTTCCTGGAGGTCAATCCTAAGTGCATAATATTGTGTAATAGAACCCAATGCACCGAAAATGTGAAATATTTGATGACTATGACCGAAAACATCGAACCTTCCAGGAAAAAGCCTTTCAGGAAAGTGTGAGACAAACAAAAATCCTGCAGAAAGCATTGACATGAAGTGCAAGTTCCAATAATAAAGTGAACTACATTCAGAAGACTCATATTCACTTGCCATGTACTTACAGGTATATGAACGCCACAGAACCG GAGTCCCGACGTAAAACAAAATAA]
[-] EMBL CD167843 [ CGACATTTGTCTTAATTTGGCGTTACGTTCCTGGAGGTCAATCCTAAGTGCATAATATTGTGTAATAGAACCCAATGCACCGAAAATGTGAAATATTTGATGACTATGACCGAAAACATCGAACCTTCCAGGAAAAAGCCTTTCAGGAAAGTGT AGAC ]
consensusID : consensus_9566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[TCACCCTGGNCAAGGGTGGNAAATCAGGAAAGTTTATTCTGAAAATAATTATCATTTGCAATGTACATGTGGCTTGATCGATGAAATAAGCTATTTTAATCCAAAAAGGCAATAGTTCAAGTGACAAGTGTAAAAAGCAGGACTTGTAGAACGTTTATGTGCTGGAAAACAATGAATCCCTTAGAATCAAACAAATCGGTCAAGAATGAAAATATGGCAAACGATGAAAAGGCTAAATTGAGATACAGAGGTCTGAAAAGTATAGCACAAAGCAGCTACATAAAGATAATTACAATCTTTTGCGTCCTGTGATGATACCAAGACGTTTGTAAAACTTTAGAAAAATAATAAAATTACAAAACACAACCAAACCGAGACAAAACAGGGACAGAGGAATTGAAGGTGCATGCGACATTTGTCTTAATTTGGCGTTACGTTCCTGGAGGTCAATCCTAAGTGCATAATATTGTGTAATAGAACCCAATGCACCGAAAATGTGAAATATTTGATGACTATGACCGAAAACATCGAACCTTCCAGGAAAAAGCCTTTCAGGAAAGTGTGAGA]
[+] EMBL CD168180 [TCACCCTGGNCAAGGGTGGNAAATCAGGAAAGTTTATTCTGAAAATAATTATCATTTGCAATGTACATGTGGCTTGATCGATGAAATAAGCTATTTTAATCCAAAAAGGCAATAGTTCAAGTGACAAGTGTAAAAAGCAGGACTTGTAGAACGTTTATGTGCTGGAAAACAATGAATCCCTTAGAATCAAACAAATCGGTCAAGAATGAAAATATGGCAAACGATGAAAAGGCTAAATTGAGATACAGAGGTCTGAAAAGTATAGCACAAAGCAGCTACATAAAGATAATTACAATCTTTTGCGTCCTGTGATGATACCAAGACGTTTGTAAAACTTTAGAAAAATAATAAAATTACAAAACACAACCAAACCGAGACAAAACAGGGACAGAGGAATTGAAGGTGCATGCGACATTTGTCTTAATTTGGCGTTACGTTCCTGGAGGTCAATCCTAAGTGCATAATATTGTGTAATAGAACCCAATGCACCGAAAATGTGAAATATTTGATGACTATGACCGAAAACATCGAACCTTCCAGGAAAAAGCCTTTCAGGAAAGTGTGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9566#0 TATCTTACGTCCAACCGAAAAATTATTGAAAAC--AGGAAGTTTAT-CTGAAAATAATTA 57
consensus_9566#1 ---------TCACCCTGGNCAAGGGTGGNAAATCAGGAAAGTTTATTCTGAAAATAATTA 51
** * * ** * * *** * ******** *************
consensus_9566#0 TCATTTGCAATGTACATGTGGCTTGATCGATGAAATAAGCTATTTTAATCCAAAAAGGCA 117
consensus_9566#1 TCATTTGCAATGTACATGTGGCTTGATCGATGAAATAAGCTATTTTAATCCAAAAAGGCA 111
************************************************************
consensus_9566#0 ATAGTTCAAGTGACAAGTGTAAAAAGCAGGACTTGTAGAACGTTTATGTGCTGGAAAACA 177
consensus_9566#1 ATAGTTCAAGTGACAAGTGTAAAAAGCAGGACTTGTAGAACGTTTATGTGCTGGAAAACA 171
************************************************************
consensus_9566#0 ATGAATCCCTTAGAATCAAACAAATCGGTCAAGAATGAAAATATGGCAAACGATGAAAAA 237
consensus_9566#1 ATGAATCCCTTAGAATCAAACAAATCGGTCAAGAATGAAAATATGGCAAACGATGAAAAG 231
***********************************************************
consensus_9566#0 GCTAAATTGAGATACAGAGGTCTGAAAAGTATAGCACAAAGCAGCTACATAAAGATAATT 297
consensus_9566#1 GCTAAATTGAGATACAGAGGTCTGAAAAGTATAGCACAAAGCAGCTACATAAAGATAATT 291
************************************************************
consensus_9566#0 ACAATCTTTTGCGTCCTGTGATGATACCAAGACGTTTGTAAAACTTTAGAAAAATAATAA 357
consensus_9566#1 ACAATCTTTTGCGTCCTGTGATGATACCAAGACGTTTGTAAAACTTTAGAAAAATAATAA 351
************************************************************
consensus_9566#0 AATTACAAAACACAACCAAACCGAGACAAAACAGAGACAGAGGAATTGAAGGTGCATGCG 417
consensus_9566#1 AATTACAAAACACAACCAAACCGAGACAAAACAGGGACAGAGGAATTGAAGGTGCATGCG 411
********************************** *************************
consensus_9566#0 ACATTTGTCTTAATTTGGCGTTACGTTCCTGGAGGTCAATCCTAAGTGCATAATATTGTG 477
consensus_9566#1 ACATTTGTCTTAATTTGGCGTTACGTTCCTGGAGGTCAATCCTAAGTGCATAATATTGTG 471
************************************************************
consensus_9566#0 TAATAGAACCCAATGCACCGAAAATGTGAAATATTTGATGACTATGACCGAAAACATCGA 537
consensus_9566#1 TAATAGAACCCAATGCACCGAAAATGTGAAATATTTGATGACTATGACCGAAAACATCGA 531
************************************************************
consensus_9566#0 ACCTTCCAGGAAAAAGCCTTTCAGGAAAGTGTGAGACAAACAAAAATCCTGCAGAAAGCA 597
consensus_9566#1 ACCTTCCAGGAAAAAGCCTTTCAGGAAAGTGTGAGA------------------------ 567
************************************
consensus_9566#0 TTGACATGAAGTGCAAGTTCCAATAATAAAGTGAACTACATTCAGAAGACTCATATTCAC 657
consensus_9566#1 ------------------------------------------------------------
consensus_9566#0 TTGCCATGTACTTACAGGTATATGAACGCCACAGAAATCGAGTCCCGACGTAAAACAAAA 717
consensus_9566#1 ------------------------------------------------------------
consensus_9566#0 TAA 720
consensus_9566#1 ---
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||