These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9575#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 919 fasta sequence [GCCANAATTCGGCACGAGGACATTTTGATCAGGCTGTCTAAAAATCACCGGGGATATATGTACAGATGAATTTTTTTGATGCAACTTATTTCTAAGTTCTCTCTGTTCAGCTGGTGACGGAAATCCAATGGTCCTTAGATGCGCTGACTACCAGGACCGAAACAATGCACGCAGCTGTAAGCAACCATAGAGCTTTTGGGAGCTCTTCTTGACAATGGTCGTTTTAGCCATACCAATCACTGGTGTTATTTAAGTTTCACAAGTGTAATAACATTTCTTCCTGACTTATTGGTGAAAACGTTTTTATTTCCTTAAAAGTTAACCTTACGGAAGTCCAAGCTCAGCAAATCTTCGACGGATTTTTCGAGGAGGTTTTTGTTGAGTGTGAGGAGAAGTATGGGGAAATAGAGGAAATGAATGTTTGTGATAATCTTGGTGATCATCTAGTTGGGAACGTTTATATAAAATTCAGGCGTGAAGAAGATGCTGAAAAAGCTGTCCAAGATTTGAATGAGCGCTGGTTTGGCGGTAGACCAGTGCATGCTGAGCTTTCTCCTGTCACAGATTTTCGTGAGGCATGTTGTCGTCAGTATGAACTGGGGGAATGTACAAGG-GGTGGTTTCTGCAACTTCATGCATTTGAAACCTATTTCTAGAGAACTTTGTCGTAAATTGTACAATCGGAGCAAAAAACGTTACGGGAGAAGACGTCGATCACGTTCCCACTCACCTTCCAAGAGTCGATGTCGTCGTTCAAGATCAGCTGGTCGTGTGTCAAGACGTTAGGTTTTCTTACGCGTGATCTGGTGTATAATTTAATTCCGTCATTTGTATATGGTTTTACTTCTGTAAACTGGTACGATTCACATCCATGTCCATTCCAGCTCTATGAAGCATTTTACGGTGTACTAAATATACAT] [+] EMBL CD082271 [GCCANAATTCGGCACGAGGACATTTTGATCAGGCTGTCTAAAAATCACCGGGGATATATGTACAGATGAATTTTTTTGATGCAACTTATTTCTAAGTTCTCTCTGTTCAGCTGGTGACGGAAATCCAATGGTCCTTAGATGCGCTGACTACCAGGACCGAAACAATGCACGCAGCTGTAAGCAACCATAGAGCTTTTGGGAGCTCTTCTTGACAATGGTCGTTTTAGCCATACCAATCACTGGTGTTATTTAAGTTTCACAAGTGTAATAACATTTCTTCCTGACTTATTGGTGAAAACGTTTTTATTTCCTTAAAAGTTAACCTTACGGAAGTCCAAGCTCAGCAAATCTTCGACGGATTTTTCGAGGAGGTTTTTGTTGAGTGTGAGGAGAAGTATGGGGAAATAGAGGAAATGAATGTTTGTGATAATCTTGGTGATCATCTAGTTGGGAACGTTTATATAAAATTCAGGCGTGAAGAAGATGCTGAAAAAGCTGTCCAAGATTTGAATGAGCGCTGGTTTGGCGGTAGACCAGTGCATGCTGAGCTTTCTCCTGTCACAGATTTTCGTGAGGCATGTTGTCGTCAGTATGAACTGGGGGAATGTACAAGGNGGTGGT ] [-] EMBL CD075877 [ TTTTTA TTCCCTAAAAGTTAACC TACGGAAGTCCAAGCTCAGCAAATCTTCGACGGATTTTTCGAGGAGGTTTTTGTTGAGTGTGAGGAGAAGTATGGGGAAATAGAGGAAATGAATGTTTGTGATAATCTTGGTGATCATCTAGTTGGGAACGTTTATATAAAATTCAGGCGTGAAGAAGATGCTGAAAAAGCTGTCCAAGATTTGAATGAGCGCTGGTTTGGCGGTAGACCAGTGCATGCTGAGCTTTCTCCTGTCACAGATTTTCGTGAGGCATGTTGTCGTCAGTATGAACTGGGGGAATGTACAAGG GGTGGTTTCTGCAACTTCATGCATTTGAAACCTATTTCTAGAGAACTTTGTCGTAAATTGTACAATCGGAGCAAAAAACGTTACGGGAGAAGACGTCGATCACGTTCCCACTCACCTTCCAAGAGTCGATGTCGTCGTTCAAGATCAGCTGGTCGTGTGTCAAGACGTTAGGTTTTCTTACGCGTGATCTGGTGTATAATTTAATTCCGTCATTTGTATATGGTTTTACTTCTGTAAACTGGTACGATTCACATCCATGTCCATTCCAGCTCTATGAAGCATTTTACGGTGTACTAAATATACAT] [+] EMBL CD134822 [ CTTACGGAAGTCCAAGCTCAGCAAATCTTCGACGAATTTTTCGAGGAGGTCTTTGTTGAATGTGAGGAGAAGTATGGGGAAATAGAAGAAATGAATGTGTGTGATAATCTTGGTGATCATCTAGTTGGAAACGTTTATATAAAATTCAGGCGTGAAGAAGATGCTGAAAAAGCTGTTCAGGATTTAAATGAACGCTGGTTTGGTGGAAGACCAGTTCATGCTGAGCTTTCTCCTGTCACAGATTTTCGTGAGGCGTGTTGTCGTCAATATGAACTGGGGGAATGTACAAGA GGTGGTTTCTGCAACTTCATGCATTTGAAACCCATTTCCAGAGAACTTTGTCGTAAATTGTACAATCGGAGCAAGAAACGTTATGGGAGAAGACGACGATCACGTTCTCATTCACCg ] [-] EMBL CD076067 [ AGTCCAAGCTCAGCAAATCTTCGACGGATTTTTCGAGGAGGTTTTTGTTGAGTGTGAGGAGAAGTATGGGGAAATAGAGGAAATGAATGTTTGTGATAATCTTGGTGATCATCTAGTTGGGAACGTTTATATAAAATTCAGGCGTGAAGAAGATGCTGAAAAAGCTGTCCAAGATTTGAATGAGCGCTGGTTTGGCGGTAGACCAGTGCATGCTGAGCTTTCTCCTGTCACAGATTTTCGTGAGGCATGTTGTCGTCAGTATGAACTGGGGGAATGTACAAGG GGTGGTTTCTGCAACTTCATGCATTTGAAACCTATTTCTAGAGAACTTTGTCGTAAATTGTACAATCGGAGCAAAAAACGTTACGGGAGAAGACGTCGATCACGTTCCCACTCACCTTCCAAGAGTCGATGTCGTCGTTCAAGATCAGCTGGTCGTGTGTCAAGACGTTAGGTTTTCTTACGCGTGATCTGGTGTATAATTTAATTCCGTCATTTGTATATGGTTTTACTTCTGTAAACTGGTACGATTCACATCCATGTCCATTCCAGCTCTATGAAGCATTTTACGGTGAACTAAATATACAT] [+] EMBL CD137162 [ TTCAGGCGTGAAGAAGATGCTGAAAAAGCTGTCCAAGATTTGAATGAGCGCTGGTTTGGCGGTAGACCAGTGCATGCTGAGCTTCCTCCTGTCACAGATTTTCGTGAGGCATGTTGTCGTCAGTATGAACTGGGGGAATGTACAAGG GGTGGTTTCTGCAACTTCATGCATTTGAAACCTATTTCTAGAGAACTTTGTCGTAAATTGTACAATCGGAGCAAAAAACGTTACGGGAGAAGACGTCGATCACGTTCCCACTCACCTTCCAAGAGTCGATGTCGTCGTTCAAGATCAGCTGGTCGTGTGTCAAGACGTTAGGTTTTCTTACGCGTGATCTGGTGTATAATTTAATTCCGACATTTGTATATGGTTTTACTTCTGTAAACTGGTACGATTCACATCCATGTCC ] consensusID : consensus_9575#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 464 fasta sequence [TTCTCTTTTAGTATGGGGAAATAGAAGAAATGAATGTGTGTGATAATCTTGGTGATCATCTAGTTGGAAACGTTTATATAAAATTCAGGCGTGAAGAAGATGCTGAAAAAGCTGTTCAGGATTTAAATGAACGCTGGTTTGGTGGAAGACCAGTTCATGCTGAGCTTTCTCCTGTCACAGATTTTCGTGAGGCGTGTTGTCGTCAATATGAACTGGGGGAATGTACAAGAGGTGGTTTCTGCAACTTCATGCATTTGAAACCCATTTCCAGAGAACTTTGTCGTAAATTGTACAATCGGAGCAAGAAACGTTATGGGAGAAGACGACGATCACGTTCTCATTCACCGTCCAAGAGTCGACGTCGCCGTTCAAGATCAGCTGGTCGTGTGTCGAGGCGTTAGGTTTTCTTCCGCATGACGACCTGGTGTATAATTTATTTCTGTTCTTTGTATATGGTTTTACTC] [-] EMBL CD093871 [TTCTCTTTTAGTATGGGGAAATAGAAGAAATGAATGTGTGTGATAATCTTGGTGATCATCTAGTTGGAAACGTTTATATAAAATTCAGGCGTGAAGAAGATGCTGAAAAAGCTGTTCAGGATTTAAATGAACGCTGGTTTGGTGGAAGACCAGTTCATGCTGAGCTTTCTCCTGTCACAGATTTTCGTGAGGCGTGTTGTCGTCAATATGAACTGGGGGAATGTACAAGAGGTGGTTTCTGCAACTTCATGCATTTGAAACCCATTTCCAGAGAACTTTGTCGTAAATTGTACAATCGGAGCAAGAAACGTTATGGGAGAAGACGACGATCACGTTCTCATTCACCGTCCAAGAGTCGACGTCGCCGTTCAAGATCAGCTGGTCGTGTGTCGAGGCGTTAGGTTTTCTTCCGCATGACGACCTGGTGTATAATTTATTTCTGTTCTTTGTATATGGTTTTACTC] [+] EMBL CD188331 [ AGAAATGAATGTGTGTGATAATCTTGGTGATCATCTAGTTGGAAACGTTTATATAAAATTCAGGCGTGAAGAAGATGCTGAAAAAGCTGTTCAGGATTTAAATGAACGCTGGTTTGGTGGAAGACCAGTTCATGCTGAGCTTTCTCCTGTCACAGATTTTCGTGAGGCGTGTTGTCGTCAATATGAACTGGGGGAATGTACAAGAGGTGGTTTCTGCAACTTCATGCATTTGAAACCCATTTCCAGAGAACTTTGTCGTAAATTGTACAATCGGAGCAAGAAACGTTATGGGAGAAGACGACGATCACGTTCT ] consensusID : consensus_9575#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [CGCCTTCATATATATAAAATTCACGCGTGAAGAAGATGCTAGAAAAAGCTGTCCAAGATTTGAATGAGCGCTGGTTTGGCGGTAGACCAGTGCATGCTGAGCTTTCTCCTGTCACAGATTTTCGTGAGGCATGTTGTCGTCAGTATGAACTGGGGGAATGTACAAGGGGTGGTTTCTGCAACTTCATGCATTTGAAACCTATTTCTAGAGAACTTTGTCGTAAATTGTACAATCGGAGCAAAAAACGTTACGGGAGAAGACGTCGATCACGTTCCCACTCACCTTCCAAGAGTCGATGTCGTCGTTCAAGATCAGCTGGTCGTGTGTCAAGACGTTAGGTTTTCTTACGCGTGATCTGGTGTATAATTTAATTCCGTCATTTGTATATGGTTTTACTTCTGTAAACTGGTACGATTCACATCCATGTCC] [+] EMBL CD136855 [CGCCTTCATATATATAAAATTCACGCGTGAAGAAGATGCTAGAAAAAGCTGTCCAAGATTTGAATGAGCGCTGGTTTGGCGGTAGACCAGTGCATGCTGAGCTTTCTCCTGTCACAGATTTTCGTGAGGCATGTTGTCGTCAGTATGAACTGGGGGAATGTACAAGGGGTGGTTTCTGCAACTTCATGCATTTGAAACCTATTTCTAGAGAACTTTGTCGTAAATTGTACAATCGGAGCAAAAAACGTTACGGGAGAAGACGTCGATCACGTTCCCACTCACCTTCCAAGAGTCGATGTCGTCGTTCAAGATCAGCTGGTCGTGTGTCAAGACGTTAGGTTTTCTTACGCGTGATCTGGTGTATAATTTAATTCCGTCATTTGTATATGGTTTTACTTCTGTAAACTGGTACGATTCACATCCATGTCC] consensusID : consensus_9575#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 426 fasta sequence [TTCCTAGTGATTGAGAACACTCTGTCCTGCTCGAAATCCAAAGCAACGTAACAAAGCTTCTCCTTTATATCTCGCACAATTTCACGTTCTGCAGTAGTAGTAAAACTGTAACCTCTCTCAGTCAAGATCTTCATCATATAGTCGGTAAGATCTCTACCAGCAAGGTCCAGACGCAAAATCGCATGAGGCAATGCATAACCTTCATAGATCGGAACTGTGTGGGTCACACCATCA-CCCGAGTCCAACACTATACCAGTTGTACGACCAGATGCATACAGTGACAACACCGCCTGAATAGCAACATACATAGCTGGCACATTAAACGTCTCAAACATGATCTGTGCCATCTTCTCACGATTGGCTTTCGGGTTCAGTGGAGCTTCTGTCAACAACACTGGGATGATATGGAGAAGATATGGCACCACA] [+] EMBL CD189972 [TTCCTAGTGATTGAGAACACTCTGTCCTGCTCGAAATCCAAAGCAACGTAACAAAGCTTCTCCTTTATATCTCGCACAATTTCACGTTCTGCAGTAGTAGTAAAACTGTAACCTCTCTCAGTCAAGATCTTCATCATATAGTCGGTAAGATCTCTACCAGCAAGGTCCAGACGCAAAATCGCATGAGGCAATGCATAACCTTCATAGATCGGAACTGTGTGGGTCACACCATCA CCCGAGTCCAACACTATACCAGTTGTACGACCAGATGCATACAGTGACAACACCGCCTGAATAGCAACATACATAGCTGGCACATTAAACGTCTCAAACATGATCTGTGCCATCTTCTCACGATTGGCTTTCGGGTTCAGTGGAGCTTCTGTCAACAACAC ] [+] EMBL CD149814 [ ACGTTCTGCAGTAGTAGTAAAACTGTAACCTCTCCCAGTCAAGATCTTCATCATATAGTCGGTAAGATCTCTACCAGCAAGGTCCAGACGCAAAATCGCGTGAGGCAATGCACAACCTTCATAGATCGGAACTGTGTGGGTCACACCATCACCCCGAGTCCAACACTATACCAGTTGTACGACCAGATGCATACAGTGACAACACCGCCTGAATAGCAACATACATAGCTGGCACATTAAACGTCTCAAACATGATCTGTGTCATCTTCTCACGATTGGCTTTCGGGTTCTGTGGAGCTTCTGTCAACAACACTGGGATGATATGGAGAAGATATGGCACCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9575#0 GCCANAATTCGGCACGAGGACATTTTGATCAGGCTGTCTAAAAATCACCGGGGATATATG 60 consensus_9575#2 ------------------------------------------------------------ consensus_9575#1 ------------------------------------------------------------ consensus_9575#3 ------------------------------------------------------------ consensus_9575#0 TACAGATGAATTTTTTTGATGCAACTTATTTCTAAGTTCTCTCTGTTCAGCTGGTGACGG 120 consensus_9575#2 ------------------------------------------------------------ consensus_9575#1 ------------------------------------------------------------ consensus_9575#3 ------------------------------------------------------------ consensus_9575#0 AAATCCAATGGTCCTTAGATGCGCTGACTACCAGGACCGAAACAATGCACGCAGCTGTAA 180 consensus_9575#2 ------------------------------------------------------------ consensus_9575#1 ------------------------------------------------------------ consensus_9575#3 ------------------------------------------------------------ consensus_9575#0 GCAACCATAGAGCTTTTGGGAGCTCTTCTTGACAATGGTCGTTTTAGCCATACCAATCAC 240 consensus_9575#2 ------------------------------------------------------------ consensus_9575#1 ------------------------------------------------------------ consensus_9575#3 ------------------------------------------------------------ consensus_9575#0 TGGTGTTATTTAAGTTTCACAAGTGTAATAACATTTCTTCCTGACTTATTGGTGAAAACG 300 consensus_9575#2 ------------------------------------------------------------ consensus_9575#1 ------------------------------------------------------------ consensus_9575#3 ------------------------------------------------------------ consensus_9575#0 TTTTTATTTCCTTAAAAGTTAACCTTACGGAAGTCCAAGCTCAGCAAATCTTCGACGGAT 360 consensus_9575#2 ------------------------------------------------------------ consensus_9575#1 ------------------------------------------------------------ consensus_9575#3 ------------------------------------------------------------ consensus_9575#0 TTTTCGAGGAGGTTTTTGTTGAGTGTGAGGAGAAGTATGGGGAAATAGAGGAAATGAATG 420 consensus_9575#2 ------------------------------------------------------------ consensus_9575#1 ------------------------TTCTCTTTTAGTATGGGGAAATAGAAGAAATGAATG 36 consensus_9575#3 ------------------------------------------------------------ consensus_9575#0 TTTGTGATAATCTTGGTGATCATCTAGTTGGGAACGTTTATATAAAATTCAGGCGTGAAG 480 consensus_9575#2 ----------------------------CGCCTTCATATATATAAAATTCACGCGTGAAG 32 consensus_9575#1 TGTGTGATAATCTTGGTGATCATCTAGTTGGAAACGTTTATATAAAATTCAGGCGTGAAG 96 consensus_9575#3 -----------------TTCCTAGTGATTGAGAACACTCTGTCCTGCTCGAAATCCAAAG 43 * * * * *** consensus_9575#0 -AAGATGCT-GAAAAAGCTGTCCAAGATTTGAATGAGCGCTGGTTTGGCGGTAGACCAGT 538 consensus_9575#2 -AAGATGCTAGAAAAAGCTGTCCAAGATTTGAATGAGCGCTGGTTTGGCGGTAGACCAGT 91 consensus_9575#1 -AAGATGCT-GAAAAAGCTGTTCAGGATTTAAATGAACGCTGGTTTGGTGGAAGACCAGT 154 consensus_9575#3 CAACGTAACAAAGCTTCTCCTTTATATCTCGCACAATTTCACGTTCTGCAGTAG--TAGT 101 ** * * * * * * * * *** * * ** *** consensus_9575#0 GCATGCTGAGCTTTCTCCTGTCACAGATTTTCGTGAGGCATGTTGTCGTCAGTATGAACT 598 consensus_9575#2 GCATGCTGAGCTTTCTCCTGTCACAGATTTTCGTGAGGCATGTTGTCGTCAGTATGAACT 151 consensus_9575#1 TCATGCTGAGCTTTCTCCTGTCACAGATTTTCGTGAGGCGTGTTGTCGTCAATATGAACT 214 consensus_9575#3 AAAACTGTAACCTCTCTCAGTCA-AGATCTTCAT----CATATAGTCGGTAAGATCTCTA 156 * * * * * **** **** *** * * * * **** * ** consensus_9575#0 GGGGGAATGTACAAGGGGTGGTTTCTGCAACTTCATGCATTTGAAACCTATTTCTAGAGA 658 consensus_9575#2 GGGGGAATGTACAAGGGGTGGTTTCTGCAACTTCATGCATTTGAAACCTATTTCTAGAGA 211 consensus_9575#1 GGGGGAATGTACAAGAGGTGGTTTCTGCAACTTCATGCATTTGAAACCCATTTCCAGAGA 274 consensus_9575#3 CCAGCAAGGTCCAGACGCAAAATCGCATGAGGCAATGCAT---AACCTTCATAGATCGGA 213 * ** ** ** * * * ****** ** * * ** consensus_9575#0 ACTTTGTCGTAAATTGTACAATCGGAGCAAAAAACGTTACGGG--AGAAGACGTCGATCA 716 consensus_9575#2 ACTTTGTCGTAAATTGTACAATCGGAGCAAAAAACGTTACGGG--AGAAGACGTCGATCA 269 consensus_9575#1 ACTTTGTCGTAAATTGTACAATCGGAGCAAGAAACGTTATGGG--AGAAGACGACGATCA 332 consensus_9575#3 ACTGTGTGGGTCACACCATCACCCGAGTCCAACACTATACCAGTTGTACGACCAGATGCA 273 *** *** * * * * * *** * ** ** * * *** ** consensus_9575#0 CGTTCCCACT-CACCTTCCAAGAGTCGATGT-CGTCGTTCA-AGATCAGCTGGTCGTGTG 773 consensus_9575#2 CGTTCCCACT-CACCTTCCAAGAGTCGATGT-CGTCGTTCA-AGATCAGCTGGTCGTGTG 326 consensus_9575#1 CGTTCTCATT-CACCGTCCAAGAGTCGACGT-CGCCGTTCA-AGATCAGCTGGTCGTGTG 389 consensus_9575#3 TACAGTGACAACACCGCCTGAATAGCAACATACATAGCTGGCACATTAAACGTCTCAAAC 333 * **** * * * * * * * * * ** * * consensus_9575#0 TCAAGACGTTAGGTTTTCTTACGCGTGAT---CTGGTGTATAATTTAA-TTCCGTCATTT 829 consensus_9575#2 TCAAGACGTTAGGTTTTCTTACGCGTGAT---CTGGTGTATAATTTAA-TTCCGTCATTT 382 consensus_9575#1 TCGAGGCGTTAGGTTTTCTTCCGCATGACGACCTGGTGTATAATTTAT-TTCTGTTCTTT 448 consensus_9575#3 ATGATCTGTGCCATCTTCTCACGATTGGC--TTTCGGGTTCAGTGGAGCTTCTGTCAACA 391 * ** * **** ** ** * * ** * * * *** ** consensus_9575#0 GTATATGGTTTTACTTCTGTAAACTGGTACGATTCACATCCATGTCCATTCCAGCTCTAT 889 consensus_9575#2 GTATATGGTTTTACTTCTGTAAACTGGTACGATTCACATCCATGTCC------------- 429 consensus_9575#1 GTATATGGTTTTACTC-------------------------------------------- 464 consensus_9575#3 ACAC-TGGGATGATATGGAGAAGATATGGCACCACA------------------------ 426 * *** * * consensus_9575#0 GAAGCATTTTACGGTGTACTAAATATACAT 919 consensus_9575#2 ------------------------------ consensus_9575#1 ------------------------------ consensus_9575#3 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||