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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1528 fasta sequence
[TTAATTCTTAACTTTACCATTACTTTATTAGAAGAAATCACTAAACATAAGGGACCACCAGTTTTTCATGAAAAAGAACGTTATCGGCTAATCAGAGCTATGAAATGGGTCGATGAAGTAGTAGAAGACGCACCATACTTTACCTATGTGAAAACGTTAGAAAAATATTCTTGTGATTTCTGTGTACATGGAGATGATTTGGTGGTATCCAACGATGGTTCGGATCCCTATGCAGAAGTTAAAGCAAATAATCGATACAAAGAA-GTTAAACGAACTGAGGGTATATCTACTACAGCTTTAGTTTCAAGAATGTTAAAACGTATACAACAATTGCAAGATCAAGGTACCTATGCATCGCAGTTTAGTTCAAGTACAGAGTATTCGATTCGCCGAACACAATCGTTAGATTCTATATTAAAAAGTAAAGATAAATTTATGCATCCTTGTAAGACAAATGAAACATTATCACCCATATATCCCGGTCTAAATTCAAATTGTTCTAAAGATAATGATGTGGCAGATTCAATTAATGTTTCAATTTGGTCTACTGGTGGCATGACATATATGCCGAATATTTTACGTATAAGTCAATTTTGTTCTGGACAATTTCGTGAACCTAATAGTAATGACATTGTGGTATATGTACCGGGTACATTTGACCTATTCCACATTGGTCATTTATCATTCCCTGAGCAATGCTTAAAACTTGGGAATTATCTGGTGGTTGGATTATACTCGGATAAAACATCGTCGTTTGAAAGTGGTAGAATGGGCTCAATCCTCACACTTCAAGAACGGCTGTTATCTGTACTGGCCTGTCGATACGTGAGCAATGTAATCATTGATGCACCGTATGTAATGCCTCACAGTCTTTTGGATCATTTCAATGTAAATTATGTTGCAATAGGTTGGGATAAAAATGTTACGCCAACATTAGAGGGCTTAGACCCGATGATGGTTTGTAAAGAACGAGGTATTCTTCGTAGAATCGATAGTGGATCTAATGTTACAACTTCACTTGTTATATCCCGTATTATGAAAAATAGACTTCTTTACGAAGAACGGAATCGGAAAAAAGTGAGTAAAGAAATGCAGTTGGCGAGTAAATTCTTGACAAATAATTAATCAGATTGTTTTTTTTATTGTCAAACTAACAACACAACAATTACTTACTGACTTATCTTCTTTGTTTTCTGTCAACACTATTTATTCGTTTGTTTCCGTCACTTTTTTTTGTCTTCATTTGCTTTGAATTGTTTTAATTTGATCCAAAAAAAATGAAAAGAATGTGTCTTCTCTCCATCTCTCATCCTGTCATCTCACTTTTACGTGAGAAAAAAAGACAGTGAACATGAGTATAATGGAAATCTTACTGATTGTAAATTAATCTATGTATCGGTACAACATTCTCAATTCGTTTTTTATTAATTAGAATTTCAGTAGATGTGAAAATGCAATTGACATTGCTAAATTAATCATATTAAATTGCTGATATAATTAATGATCATACTCGAAATAAACGAAAGGA]
[+] EMBL BG930730 [TTAATTCTTAACTTTACCATTACTTTATTAGAAGAAATCACTAAACATAAGGGACCACCAGTTTTTCATGAAAAAGAACGTTATCGGCTAATCAGAGCTATGAAATGGGTCGATGAAGTAGTAGAAGACGCACCATACTTTACCTATGTGAAAACGTTAGAAAAATATTCTTGTGATTTCTGTGTACATGGAGATGATTTGGTGGTATCCAACGATGGTTCGGATCCCTATGCAGAAGTTAAAGCAAATTATCGATACAAAGAAGGTTAActa ]
[-] EMBL CD197720 [ ACCACCAGTTTTTCATGAAAAAGAACGTTATCGGCTAATCAGAGCTATGAAATGGGTCGATGAAGTAGTAGAAGACGCACCATACTTTACCTATGTGAAAACGTTAGAAAAATATTCTTGTGATTTCTGTGTACATGGAGATGATTTGGTGGTATCCAACGATGGTTCGGATCCCTATGCAGAAGTTAAAGCAAATAATCGATACAAAGAA GTTAAACGAACTGAGGGTATATCTACTACAGCTTTAGTTTCAAGAATGTTAAAACGTATACAACAATTGCAAGATCAAGGTACCTATGCATCGCAGTTTAGTTCAAGTACAGAGTATTCGATTCGCCGAACACAATCGTTAGATTCTATATTAAAAAGTAAAGATAAATTTATGCATCCTTGTAAGAC ]
[+] EMBL CD129980 [ TTACCTATGTGAAAACGTTAGAAAAATATTCTTGTGATTTCTGTGTACATGGAGATGATTTGGTGGTATCCAACGATGGTTCGGATCCCTATGCAGAAGTTAAAGCAAATAATCGATACAAAGAA GTTAAACGAACTGAGGGTATATCTACTACAGCTTTAGTTTCAAGAATGTTAAAACGTATACAACAATTGCAAGATCAAGGTACCTATGCATC ]
[-] EMBL CD059948 [ TCGATTCGCCGAACACAATCGTTAGATTCTATATTAAAAAGTAAAGATAAATTTATGCATCCTTGTAAGACAAATGAAACATTATCACCCATATATCCCGGTCTAAATTCAAATTGTTCTAAAGATAATGATGTGGCAGATTCAATTAATGTTTCAATTTGGTCTACTGGTGGCATGACATATATGCCGAATATTTTACGTATAAGTCAATTTTGTTCTGGACAATTTCGTGAACCTAATAGTAATGACATTGTGGTATATGTACCGGGTACATTTGACCTATTCCACATTGGTCAT ]
[-] EMBL CD060026 [ TCGATTCGCCGAACACAATCGTTAGATTCTATATTAAAAAGTAAAGATAAATTTATGCATCCTTGTAAGACAAATGAAACATTATCACCCATATATCCCGGTCTAAATTCAAATTGTTCTAAAGATAATGATGTGGCAGATTCAATTAATGTTTCAATTTGGTCTACTGGTGGCATGACATATATGCCGAATATTTTACGTATAAGTCAATTTTGTTCTGGACAATTTCGTGAACCTAATAGTAATGACATTGTGGTATATGTACCGGGTACATTTGACCTATTCCACATTGGTCAT ]
[-] EMBL CD118205 [ ggtagGATTCTATATAAAAAAGTAAAGATAAATTTATGCATCTTTGTAAGACGAATGAAACATTATCACCCATATATCCCGGTCTAAATTCAAATTGTTCTAAAGATAATGATGTGGCAGATCAAATTAATGTTCCAATTTGGTCTACTGGTGGCATGACATATATGCCGAATATTTTACGTATAAGTCAATTTTGTTCTGGACAATTTCGTGAACCTAATAGTAATGACATTGTGGTATATGTACCGGGTACATTTGACCTATTCCACATTGGTCATTTATCATTCCCTGAGCAATGCTTAAAACTTGGGAATTATCTGGTGGTTGGATTATACTCGGATAAAACATCGTCGTTTGAAAGTGGTAGAATGGGCTCAATCCTCACACTTCAAGAACGGCTGTTATCTGTACTGGCCTGTCGATACGTGAGCAATGTAATCATTGATGCACCGTATGTAATGCCTCACAGTCTTTTGGATCATTTCAATGTAAATTATGTTGCAATAGGTTGGGATAAAAATGTTACGCCAACATTAGAGGGCTTAGACCCGATGATGGTTTGTAAAGAACGAGGTATTCTTCGT ]
[+] EMBL CD117000 [ AATGAAACATTATCACCCATATATCCCGGTCTAAATTCAAATTGTTCTAAAGATAATGATGTGGCAGATTCAATTAATGTTTCAATTTGGTCTACTGGTGGCATGACATATATGCCGAATATTTTACGTATAAGTCAA ]
[-] EMBL CD075638 [ GGGCTTAGACCCGATGATGGTTTGTAAAGAACGAGGTATTCTTCGTAGAATCGATAGTGGATCTAATGTTACAACTTCACTTGTTATATCCCGTATTATGAAAAATAGACTTCTTTACGAAGAACGGAATCGGAAAAAAGTGAGTAAAGAAATGCAGTTGGCGAGTAAATTCTTGACAAATAATTAATCAGATTGTTTTTTTTATTGTCAAACTAACAACACAACAATTACTTACTGACTTATCTTCTTTGTTTTCTGTCAACACTATTTATTCGTTTGTTTCCGTCACTTTTTTTTGTCTTCATTTGCTTTGAATTGTTTTAATTTGATCCAAAAAAAATGAAAAGAATGTGTCTTCTCTCCATCTCTCATCCTGTCATCTCACTTTTACGTGAGAAAAAAAGACAGTGAACATGAGTATAATGGAAATCTTACTGATTGTAAATTAATCTATGTATCGGTACAACATTCTCAATTCGTTTTTTATTAATTAGAATTTCAGTAGATGTGAAAATGCAATTGACATTGCTAAATTAATCATATTAAATTGCTGATATAATTAATGATCATACTCGAAATAAACGAAAGGA]
[-] EMBL CD076999 [ CGAAGAACGGAATCGGAAAAAAGTGAGTAAAGAAATGCAGTTGGCGAGTAAATTCTTGACAAATAATTAATCAGATTGTTTTTTTTATTGTCAAACTAACAACACAACAATTACTTACTGACTTATCTTCTTTGTTTTCTGTCAACACTATTTATTCGTTTGTTTCCGTCACTTTTTTTTGTCTTCATTTGCTTTGAATTGTTTTAATTTGATCCAAAAAAAATGAAAAGAATGTGTCTTCTCTCCATCTCTCATCCTGTCATCTCACTTTTACGTGAGAAAAAAAGACAGTGAACATGAGTATAATGGAAATCTTACTGATTGTAAATTAATCTATGTATCGGTACAACATTCTCAATTCGTTTTTTATTAATTAGAATTTCAGTAGATGTGAAAATGCAATTGACATTGCTAAATTAATCATATTAAATTGCTGATATAATTAATGATCATACTGGAAATAAACGAAA ]
consensusID : consensus_9578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence
[CCTCCGGGCCAANAATTCGGCACGAGGGGTATATGTACCGGGTACATTTGACCTATTCCCATTGGTCATTTATCATTCCTTGAGCAATGCTTAAAACTTGGGAATTATCTGGTGGTTGGATTATACTCGGATAAAACATCGTCATTTGAAAGTGGTCGAATGGGCTCAATCCTCACACTTCAAGAACGGCTGTTATCTGTACTGGCCTGTCGATACGTGAGCAATGTAATCATTGATGCACCGTATGTAATACCTCCCAGTCTTTTGGATCATTTCAATGTAAATTATGTTGCAATAGGTTGGGATAAAAATCTTACACCAACATTAGAGGGCTTAGACCCGATGATGGTTTGTAAAGAACGAGGTATTCTTCGTAGAATCGATAGTGGATCTAATGTTACAACTTCACTTGTTATATCCCGTATTATGAAAAATAGACTTCTTTACGAAGAACGGAATCGGAAAAAAGTGAGTAAAGAAATGCAGTTGGCGAGTAAATTCTTGACAAATAATTAATCAGATTGTTTTTTTTATTGTCAAACTAACAACACAACAATTACTTACTGACTTATCTTCTTTGTTTTCTGTCACACTATTTATTCGTTTGTTTCCGTCACTTTTTTTTGTCTTCATTTGCTTTGAATTGTTTTAATTTGATCCANANNAATGANAAGAATGTGTCTTCTCTCATCTCTCATCCTGTCATCTCACTTTTACGTGAGAAANNAGACAGTGAACATGAGTATAATGGAATCTTACTGNATGAANTNATCTATGTATCGTACACATTCTCAANTCGTTTTATTANTAGAATTCAGTGATGTGAAAATGCATGACATGCTAANTATCAATAAANTGTGAATANNTATGACCTCCTCGANAAACGA]
[+] EMBL CD082024 [CCTCCGGGCCAANAATTCGGCACGAGGGGTATATGTACCGGGTACATTTGACCTATTCCCATTGGTCATTTATCATTCCTTGAGCAATGCTTAAAACTTGGGAATTATCTGGTGGTTGGATTATACTCGGATAAAACATCGTCATTTGAAAGTGGTCGAATGGGCTCAATCCTCACACTTCAAGAACGGCTGTTATCTGTACTGGCCTGTCGATACGTGAGCAATGTAATCATTGATGCACCGTATGTAATACCTCCCAGTCTTTTGGATCATTTCAATGTAAATTATGTTGCAATAGGTTGGGATAAAAATCTTACACCAACATTAGAGGGCTTAGACCCGATGATGGTTTGTAAAGAACGAGGTATTCTTCGTAGAATCGATAGTGGATCTAATGTTACAACTTCACTTGTTATATCCCGTATTATGAAAAATAGACTTCTTTACGAAGAACGGAATCGGAAAAAAGTGAGTAAAGAAATGCAGTTGGCGAGTAAATTCTTGACAAATAATTAATCAGATTGTTTTTTTTATTGTCAAACTAACAACACAACAATTACTTACTGACTTATCTTCTTTGTTTTCTGTCACACTATTTATTCGTTTGTTTCCGTCACTTTTTTTTGTCTTCATTTGCTTTGAATTGTTTTAATTTGATCCANANNAATGANAAGAATGTGTCTTCTCTCATCTCTCATCCTGTCATCTCACTTTTACGTGAGAAANNAGACAGTGAACATGAGTATAATGGAATCTTACTGNATGAANTNATCTATGTATCGTACACATTCTCAANTCGTTTTATTANTAGAATTCAGTGATGTGAAAATGCATGACATGCTAANTATCAATAAANTGTGAATANNTATGACCTCCTCGANAAACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9578#0 TTAATTCTTAACTTTACCATTACTTTATTAGAAGAAATCACTAAACATAAGGGACCACCA 60
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 GTTTTTCATGAAAAAGAACGTTATCGGCTAATCAGAGCTATGAAATGGGTCGATGAAGTA 120
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 GTAGAAGACGCACCATACTTTACCTATGTGAAAACGTTAGAAAAATATTCTTGTGATTTC 180
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 TGTGTACATGGAGATGATTTGGTGGTATCCAACGATGGTTCGGATCCCTATGCAGAAGTT 240
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 AAAGCAAATAATCGATACAAAGAAGTTAAACGAACTGAGGGTATATCTACTACAGCTTTA 300
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 GTTTCAAGAATGTTAAAACGTATACAACAATTGCAAGATCAAGGTACCTATGCATCGCAG 360
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 TTTAGTTCAAGTACAGAGTATTCGATTCGCCGAACACAATCGTTAGATTCTATATTAAAA 420
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 AGTAAAGATAAATTTATGCATCCTTGTAAGACAAATGAAACATTATCACCCATATATCCC 480
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 GGTCTAAATTCAAATTGTTCTAAAGATAATGATGTGGCAGATTCAATTAATGTTTCAATT 540
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 TGGTCTACTGGTGGCATGACATATATGCCGAATATTTTACGTATAAGTCAATTTTGTTCT 600
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 GGACAATTTCGTGAACCTAATAGTAATGACATTGTGGTATATGTACCGGGTACATTTGAC 660
consensus_9578#1 -------CCTCCGGGCCAANAATTCGGCACGA-GGGGTATATGTACCGGGTACATTTGAC 52
* ** * * * ** * *************************
consensus_9578#0 CTATTCCACATTGGTCATTTATCATTCCCTGAGCAATGCTTAAAACTTGGGAATTATCTG 720
consensus_9578#1 CTATTCC-CATTGGTCATTTATCATTCCTTGAGCAATGCTTAAAACTTGGGAATTATCTG 111
******* ******************** *******************************
consensus_9578#0 GTGGTTGGATTATACTCGGATAAAACATCGTCGTTTGAAAGTGGTAGAATGGGCTCAATC 780
consensus_9578#1 GTGGTTGGATTATACTCGGATAAAACATCGTCATTTGAAAGTGGTCGAATGGGCTCAATC 171
******************************** ************ **************
consensus_9578#0 CTCACACTTCAAGAACGGCTGTTATCTGTACTGGCCTGTCGATACGTGAGCAATGTAATC 840
consensus_9578#1 CTCACACTTCAAGAACGGCTGTTATCTGTACTGGCCTGTCGATACGTGAGCAATGTAATC 231
************************************************************
consensus_9578#0 ATTGATGCACCGTATGTAATGCCTCACAGTCTTTTGGATCATTTCAATGTAAATTATGTT 900
consensus_9578#1 ATTGATGCACCGTATGTAATACCTCCCAGTCTTTTGGATCATTTCAATGTAAATTATGTT 291
******************** **** **********************************
consensus_9578#0 GCAATAGGTTGGGATAAAAATGTTACGCCAACATTAGAGGGCTTAGACCCGATGATGGTT 960
consensus_9578#1 GCAATAGGTTGGGATAAAAATCTTACACCAACATTAGAGGGCTTAGACCCGATGATGGTT 351
********************* **** *********************************
consensus_9578#0 TGTAAAGAACGAGGTATTCTTCGTAGAATCGATAGTGGATCTAATGTTACAACTTCACTT 1020
consensus_9578#1 TGTAAAGAACGAGGTATTCTTCGTAGAATCGATAGTGGATCTAATGTTACAACTTCACTT 411
************************************************************
consensus_9578#0 GTTATATCCCGTATTATGAAAAATAGACTTCTTTACGAAGAACGGAATCGGAAAAAAGTG 1080
consensus_9578#1 GTTATATCCCGTATTATGAAAAATAGACTTCTTTACGAAGAACGGAATCGGAAAAAAGTG 471
************************************************************
consensus_9578#0 AGTAAAGAAATGCAGTTGGCGAGTAAATTCTTGACAAATAATTAATCAGATTGTTTTTTT 1140
consensus_9578#1 AGTAAAGAAATGCAGTTGGCGAGTAAATTCTTGACAAATAATTAATCAGATTGTTTTTTT 531
************************************************************
consensus_9578#0 TATTGTCAAACTAACAACACAACAATTACTTACTGACTTATCTTCTTTGTTTTCTGTCAA 1200
consensus_9578#1 TATTGTCAAACTAACAACACAACAATTACTTACTGACTTATCTTCTTTGTTTTCTGTCA- 590
***********************************************************
consensus_9578#0 CACTATTTATTCGTTTGTTTCCGTCACTTTTTTTTGTCTTCATTTGCTTTGAATTGTTTT 1260
consensus_9578#1 CACTATTTATTCGTTTGTTTCCGTCACTTTTTTTTGTCTTCATTTGCTTTGAATTGTTTT 650
************************************************************
consensus_9578#0 AATTTGATCCAAAAAAAATGAAAAGAATGTGTCTTCTCTCCATCTCTCATCCTGTCATCT 1320
consensus_9578#1 AATTTGATCCANANNAA-TGANAAGAATGTGTCTTCTCTC-ATCTCTCATCCTGTCATCT 708
*********** * ** *** ****************** *******************
consensus_9578#0 CACTTTTACGTGAGAAAAAAAGACAGTGAACATGAGTATAATGGAAATCTTACTGATTGT 1380
consensus_9578#1 CACTTTTACGTGAGAAANNA-GACAGTGAACATGAGTATAATGGAA-TCTTACTGN--AT 764
***************** * ************************* ******** *
consensus_9578#0 AAATTAATCTATGTATCGGTACAACATTCTCAATTCGTTTTTTATTAATTAGAATTTCAG 1440
consensus_9578#1 GAANTNATCTATGTATCG-TACA-CATTCTCAANTCGTTTT--ATTANT-AGAATT-CAG 818
** * ************ **** ********* ******* **** * ****** ***
consensus_9578#0 TAGATGTGAAAATGCAATTGACATTGCTAAATTAATCATATTAAATTGCTGATATAATTA 1500
consensus_9578#1 T-GATGTGAAAATGCA--TGACAT-GCTAANT--ATCA--ATAAANTGTGAATAN---NT 867
* ************** ****** ***** * **** **** ** ***
consensus_9578#0 ATGATCATACTCGAAATAAACGAAAGGA 1528
consensus_9578#1 ATGACC-TCCTCGANA--AACGA----- 887
**** * * ***** * *****
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||