|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1253 fasta sequence
[AAGCTGAAAGGACTGAAGTATTTTATTGTTGGTTCAGGTGCAATTGGATGCGAGCTGCTAAAAAACTTTTCGTTGATGGGCGTTGGTGCAGGGCCGTCTGGAAAAGTTGTTGTGACAGACATGGATCTCATCGAAAGATCAAACCTGAACAGACGGTTCCTCTGTCGTCCATGGGATACCCATAAAATGAAATCAGTCGTGGCATCGACTGCTGCTAAAGTGATAAATCCAGAGTTTAATATTGAAGCTCATGAGAATCGTGTCGGTCCGGAAACAGAGAAAATCTATGACGACGAATTCTTCGAAAAATTGGATGGAATTGCTAATGCGTTAGACAACGTCGAGGCCCGCACTTATGTTGATCGTCGTTGTGTGTATTATCGCAACTCAATCGCACCATACACGGAAGACTGGCCGAGTACAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCACAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCAAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTACTGAGT-TGACGACCGTGGTTGCTGGTGGTAT----TGTGC------GTTGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTTGGATATTTCGTTCCATCTTGTCCTATGCGTTTGTTTCAGGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAA]
[+] EMBL CD095100 [AAGCTGAAAGGACTGAAGTATTTTATTGTTGGTTCAGGTGCAATTGGATGCGAGCTGCTAAAAAACTTTTCGTTGATGGGCGTTGGTGCAGGGCCGTCTGGAAAAGTTGTTGTGACAGACATGGATCTCATCGAAAGATCAAACCTGAACAGACGGTTCCTCTGTCGTCCATGGGATACCCATAAAATGAAATCAGTCGTGGCATCGACTGCTGCTAAAGTGATAAATCCAGAGTTTAATATTGAAGCTCATGAGAATCGTGTCGGTCCGGAAACAGAGAAAATCTATGACGACGAATTCTTCGAAAAATTGGATGGAATTGCTAATGCGTTAGACAACGTCGAGGCCCGCACTTATGTTGATCGTCGTTGTGTGTATTATCGCAACTCAATCGCACCATACACGGAAGACTGGCCGAGTACAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGT ]
[-] EMBL CD162952 [ GTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCACAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCAAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCAGGAGTTCTGTCGTATGGTACAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTACTGAGT TGACGA ]
[-] EMBL CD162828 [ GTTTGAGACGTGGAATGTTTGCACTATTACCATCGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCACAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCAAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTACTGAGT TGACGA ]
[+] EMBL CD096211 [ TAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCACAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCAAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTACTGAGT TGAC ]
[+] EMBL CD118309 [ AACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCACAAGGTTTCGCTCCTCAAGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGATGGTGGGAAGTGTAGTCGGGAGTTCTGTCGAATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGT GTTCATG GTCTGTCGTATGTGG ]
[-] EMBL CD119243 [ nTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCACAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTGTTGAGT TGACGACCGTGGTTGCTGGTGGTAT TGTGC GTTGTATTTGTAGTTGTTTGCATTTCGAATCATGTTAGAATAGTTGGATATTTCGTTCCATCTTGTTCTATGCGTTTGTTTCAGGA ]
[+] EMBL CD156905 [ TGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTACTGAGT TGACGACCGTGGTTGCTGGTGGTATTGTGTGTGCGTGTGTGTTGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTTGGATATTTCGTTCCATCTTGTCCTATGCGTTTGTTTCAGGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAA]
[+] EMBL CD156965 [ TGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTACTGAGT TGACGACCGTGGTTGCTGGTGGTATTGTGTGTGCGTGTGTGTTGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTTGGATATTTCGTTCCATCTTGTCCTATGCGTTTGTTTCAGGATGGTGTTTTGATGTTGGAGGCTCCAATGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGGCCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAA]
consensusID : consensus_9580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 501 fasta sequence
[TGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTGTTGAGTTGACGACCGTGGTTGCTGGTGGTATTGTGTGTACGTGTGTGTTGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTTGGAGATTTGCTTTCAACCTTGTTCTGTGCGTTTGTTTGTTTGTTTCAGGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGGTGAGAGGAGTTGTGATTGACTTAGATGTAACATGTGTGTGTGTGTTGATGGTGATCCGGTGGGTGTGTTATTCTCGTTTGTGTGTGTAGCATTTTCATCATAACATTTGTATGTTTTCCTATCTATTTCA]
[+] EMBL CD118798 [TGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTGTTGAGTTGACGACCGTGGTTGCTGGTGGTATTGTGTGTACGTGTGTGTTGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTTGGAGATTTGCTTTCAACCTTGTTCTGTGCGTTTGTTTGTTTGTTTCAGGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGGTGAGAGGAGTTGTGATTGACTTAGATGTAACATGTGTGTGTGTGTTGATGGTGATCCGGTGGGTGTGTTATTCTCGTTTGTGTGTGTAGCATTTTCATCATAACATTTGTATGTTTTCCTATCTATTTCA]
[+] EMBL CD118846 [TGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGTAAGTTGTTGAGTTGACGACCGTGGTTGCTGGTGGTATTGTGTGTACGTGCGTGTTGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTTGGAGATTTGCTTTCAACCTTGTTCTGTGCGTTTGTTTGTTTGTTTCAGGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAAGCAGNTCCTGCATCACAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9580#0 AAGCTGAAAGGACTGAAGTATTTTATTGTTGGTTCAGGTGCAATTGGATGCGAGCTGCTA 60
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 AAAAACTTTTCGTTGATGGGCGTTGGTGCAGGGCCGTCTGGAAAAGTTGTTGTGACAGAC 120
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 ATGGATCTCATCGAAAGATCAAACCTGAACAGACGGTTCCTCTGTCGTCCATGGGATACC 180
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 CATAAAATGAAATCAGTCGTGGCATCGACTGCTGCTAAAGTGATAAATCCAGAGTTTAAT 240
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 ATTGAAGCTCATGAGAATCGTGTCGGTCCGGAAACAGAGAAAATCTATGACGACGAATTC 300
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 TTCGAAAAATTGGATGGAATTGCTAATGCGTTAGACAACGTCGAGGCCCGCACTTATGTT 360
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 GATCGTCGTTGTGTGTATTATCGCAACTCAATCGCACCATACACGGAAGACTGGCCGAGT 420
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 ACAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTG 480
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 AGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAAT 540
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 CCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGG 600
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 TCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTA 660
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 GGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGT 720
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 GCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCG 780
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 TAGGTACATTTCAAGGTACGATTCGATGCACAAGGTTTCGCTCCTCAGGACATCAATGTG 840
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 ACGTCGAGTGAGAACCGTGTGACGGTACACGCAAAGAAGGAGACGACGACCGATGGTAGG 900
consensus_9580#1 ------------------------------------------------------------
consensus_9580#0 AAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAA 960
consensus_9580#1 ---TGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAA 57
*********************************************************
consensus_9580#0 CTGAAATGTCGCATGACAGATGTAAGTTACTGAGTTGACGACCGTGGTTGCTGGTGGTAT 1020
consensus_9580#1 CTGAAATGTCGCATGACAGATGTAAGTTGTTGAGTTGACGACCGTGGTTGCTGGTGGTAT 117
**************************** ******************************
consensus_9580#0 TGTGCGT----------TGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTT 1070
consensus_9580#1 TGTGTGTACGTGTGTGTTGTATTTGCAGTTGTTCGCATTTCGAATCATGTTAGAATAGTT 177
**** ** *******************************************
consensus_9580#0 GGATATTT-CGTTCCATCTTGTCCTATGCGTTTGTTT--------CAGGATGGTGTTTTG 1121
consensus_9580#1 GGAGATTTGCTTTCAACCTTGTTCTGTGCGTTTGTTTGTTTGTTTCAGGATGGTGTTTTG 237
*** **** * *** * ***** ** *********** ***************
consensus_9580#0 ATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGT 1181
consensus_9580#1 ATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGT 297
************************************************************
consensus_9580#0 CAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCT 1241
consensus_9580#1 CAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCT 357
************************************************************
consensus_9580#0 CTTGTTGCGAAA------------------------------------------------ 1253
consensus_9580#1 CTTGTTGCGAAAGGTGAGAGGAGTTGTGATTGACTTAGATGTAACATGTGTGTGTGTGTT 417
************
consensus_9580#0 ------------------------------------------------------------
consensus_9580#1 GATGGTGATCCGGTGGGTGTGTTATTCTCGTTTGTGTGTGTAGCATTTTCATCATAACAT 477
consensus_9580#0 ------------------------
consensus_9580#1 TTGTATGTTTTCCTATCTATTTCA 501
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||