These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1059 fasta sequence [CTCCTAGAGGATACCATGCAATCATCGGGATCATGAGTAGATGGAGAGAGTGGAGAAAA-T-TGTGTTTGTTCTACCGAC-TAATAGTTTGAGTGATGGTGTCGACCGCTTGTAAGCGTCGTGCAGTTTTCACTCG-GGATCAATGTAGTAGAATGGTGTTAGTTGGTTGTCAGTTTCCACTGAG-TCATATGATCGTTCATTTGTTGGGAATTAAGCTCCTTTCATCGAAGTGGGTGTCTGTGCAGATTTGATTATGTGTTATTTATTTGTGACACGTAACGTGT-TTGGTACAATTGAGTGCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCT-TTTATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGACCCTTGTCGAGTTACGTTGTAGTCGTGGTCGCGACCAGGACTTATTTAGATTTTGATGATGTATAGAGAAGCTGTGACGGTGTTTTACAATTTGTGGGAAAGTCGGATAATGTATTGTTGTGCTTATGTGACATGTTGCTTGTGCTCAGCTAATGAATTGATAACTGGTTGTCACCCATTTTGTGTTTCAAGTGGGCATCATGCCTTTCGGATGTGTGCAACGTGTTA-TTTTTAAGCTTTTTAAGGGGTACACTTGCCAAATGTAGGGCCTCGATTAATGAAGTTGCTGGTTTTATTTACGTCAAGACAATTTGATTGAGCAATGAATTTGTTGGCGAATACCGTATAAGTAGTTGTAGAAGTAATAAAAGAAGAAGGAGGGTGAGCGGGTGTTGATGTGAAAGTGAGAGAATGCAGGGTAAGTTTTTATTCGGTGGCGTGAATGGATGTGGCAAGAGATCAGTTATGGGCTTTGGTCTGTTGGATTTATGCCTGCCTAATGAAGCGTTTAGTGAATGTTTAATAAAGGGCATCTGANCAAGGCTGGTTAATAAGCCTAGTGCTTCAGTGATGCNCAAATGGACGTAG] [+] EMBL CD061811 [CTCCTAGAGGATACCATGCAATCATCGGGATCATGAGTAGATGGAGAGAGTGGAGAAAAGTATGTGTTTGTTCTACCGAC TAATAGTTTGAGTGATGGTGTCGACCGCTTGTAAGCGTCGTGCAGTTTTCACTCGCGGATCAATGTAGTAGAATGGTGTTAGTTGGTTGTCAGTTTCCACTGAGCTCATATGATCGTTCATTTGTTGGGAATTAAGCTCCTTTCATCGAAGTGGGTGTCTGTGCAGATTTGATTATGTGTTATTTATTTGTGACACGTAACGTGT TTGGTACAATTGAGTGCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCT TCTATTTTGAGCCATGTTCAGTGACGTTTCACTG ] [+] EMBL CD064234 [ GGAGAGAGTGGAGAAAA T TGTGTTTGTTCTACCGACATAATAGTTTGAGTGATGGTGTCGACCGCTTGTAAGCGTCGTGCAGTTTTCACTCG GGATCAATGTAGTAGAATGGTGTTAGTTGGTTGTCAGTTTCCACTGAG TCATATGATCGTTCATTTGTTGGGAATTAAGCTCCTTTCATCGAAGTGGGTGTCTGTGCAGATTTGATTATGTGTTATTTATTTGTGACACGTAACGTGT TTGGTACAATTGAGTGCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTACAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCT TTTATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGAGCCTTGTCGAGTTACGTTGTAGTCGTG ] [+] EMBL CD139915 [ AATGTAGTAGAATGGTGTTAGTTGGTTGTCAGTTTCCACTGAG TCATATGATCGTTCATTTGTTGGGAATTAAGCTCCTTTCATCGAAGTGGGTGTCTGTGCAGATTTGATTATGTGTTATTTATTTGTGACACGTAACGTGT TTGGTACAATTGAGTGCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTNTAAGAGACGGAAGTG ] [-] EMBL CD061962 [ TAGAATGGTGTTAGTTGGTTGTCAGTTTCCACTGAG TCATATGATCGTTCATTTCTTGGGAATTAAGCTCCTTTCATCGAAGTGGGTGTCTCTGCAGATTTGATTATGTGTCATTTATTTGTGACACGTAACGTGTCTTGGTACAATTGAGTGCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCTCTTTATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGACCC TGTCGAGTTACGTTGTAGTCGT GTCGCGACCCGGAC ] [+] EMBL CD155210 [ GATCGTTCATTTGTTGGGAATTAAGCTCCTTTCATCGAAGTGGGTGTCTGTGCAGATTTGATTATGTGTTATTTATTTGTGACACGTAACGTGT TTGGTACAATTGAGTGCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCT TTTATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGACCCTTGTCGAGTTACGTTGTAGTCGTGGTCGCGACCAGGACTTATTTAGATTTTGATGATGTATAGAGAAGCTGTGACGGTG ] [+] EMBL CD158171 [ GCTAGGAAACACACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCT TTTATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGACCCTTGTCGAGTTACGTTGTAGTCGTGGTCGCGACCAGGACTTATTTAGATTTTGATGATGTATAGAGAAGCTGTGACGGTGTTTTACAATTTGTGGGAAAGTCGGATAATGTATTGTTGTGCTTATGTGACATGTTGCTTGTGCTCAGCTAATGAATTGATAACTGGTTGTCACCCATTTTGTGTTTCAAGTGGGCATCATGCCTTTCGGATGTGCGCAACGTGTTATTTTTTAAGCCTTTTAAGGGGTACACT ] [+] EMBL CD092484 [ GCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCT TTTATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATATGAGAAGGACCCTTGTCGAGTTACGTTGTAGTCGTGGTCGCGACCAGGACTTATTTAGATTTTGATGATGTATAGAGAAGCTGTGACGGTGTTTTACAATTTGTGGGATAGTCGGATAATGTATTGTTGTGCTTATGTGACATGTTGCTTG ] [+] EMBL CD158133 [ GCTAGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGGAAGTCCTGTAAATGCGATGACAGGACTACCAAATAATCACCACTGGCT TTTATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGACCCTTGTCGAGTTACGTTGTAGTCGTGGTCGCGACCAGGACTTATTTAGATTTTGATGATGTATAGAGAAGCTGTGACGGTGTTTTACAATTTGTGGGAAAGTCGGATAATGTATTGTTGTGCTTATGTGAGATGTTGCTTGTGCTCAGCTAATGAATTGATAACTGGTTGTCACCCATTTTGTGTTTCAAGTGNGCATCATGCCTTTCGGATGTGTGCAACGTGTTA TTTTTAAGCTTTTTA ] [+] EMBL CD066142 [ TATTCTGAGCCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGACCCTTGTCGAGTTACGTTGTAGTCGTGGTCGCGACCAGGACTTATTTAGATTTTGATGATGTATAGAGAAGCTGTGACGGTGTTTTACAATTTGTGGGAAAGTCGGATAATGTATTGTTGTGCTTATGTGACATGTTGCTTGTGCTCAGCTAATGAATTGATAACTGGCTGTCACCCATTTTGTGTTTCAAGTGGGCATCATGCCTTTCGGATGTGTGCAACGTGTTA TTTTTAAGCTTTTTAA GGGTACAACTGCCAAATGTAGGGCCTCGATTAATGAAGTTGCTGGTTTTATTTACGTCAAGACAATTTGATTGAGCAATGAATTTGTTGGCGAATACCGTATAAGTAGTTGTAGAAGTAATAAAAGAAGAAGGAGGGTGAGCGGGTGTTGATGTGAAAGTGAGAGAATGCAGGGTAAGTTTTTATTCGGTGGCGTGAATGGATGTGGCAAGAGATCAGTTATGGGCTTTGGTCTGTTGGATTTATGCCTGCCTAATGAAGCGTTTAGTGAATGTTTAATAAAGGGCATCTGANCAAGGCTGGTTAATAAGCCTAGTGCTTCAGTGATGCNCAAATGGACGTAG] consensusID : consensus_9581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [GAGGGAAACAACCCACACCGCCAGCTAAGGTCCCCAAGACACAGTTAAGTGGGAAACGAGGTGGGAATGCATAGACAGCTATGAGGTTGGCTTACAAGCACTCACCCTTTAGAGAAAGCGTAATAGCTCACTAGTCTAGTCGTTCTGCGCGGAAGATGTAACGGTGCTCAAACTGTGCACCGAAACTGCTGATATCAAATGATATGGTCTGGGATCGTTCTGTTTGTCTGTTAAGGTGTCTTGTTGCAGATGCTGGACATATCATAATTGCCAATGCTGGCATGATTAACTATAAAGGGAGTGAACAGCTTCCTCACCGAGAGCGCAAGGTTTCCTACGCAACTATCATCGTCGTATGGTGACTCGGCCCCTAACGTTACGCAGAAATGCGTAACCTAATGGGAAACACGTCAATATTTCTGTA] [+] EMBL CD087060 [GAGGGAAACAACCCACACCGCCAGCTAAGGTCCCCAAGACACAGTTAAGTGGGAAACGAGGTGGGAATGCATAGACAGCTATGAGGTTGGCTTACAAGCACTCACCCTTTAGAGAAAGCGTAATAGCTCACTAGTCTAGTCGTTCTGCGCGGAAGATGTAACGGTGCTCAAACTGTGCACCGAAACTGCTGATATCAAATGATATGGTCTGGGATCGTTCTGTTTGTCTGTTAAGGTGTCTTGTTGCAGATGCTGGACATATCATAATTGCCAATGCTGGCATGATTAACTATAAAGGGAGTGAACAGCTTCCTCACCGAGAGCGCAAGGTTTCCTACGCAACTATCATCGTCGTATGGTGACTCGGCCCCTAACGTTACGCAGAAATGCGTAACCTAATGGGAAACACGTCAATATTTCTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9581#0 CTCCTAGAGGATACCATGCAATCATCGGGATCATGAGTAGATGGAGAGAGTGGAGAAAAT 60 consensus_9581#1 -----GAGGGAAACAACCCA--CACCGCCAGCTAAGGT---CCCCAAGACACAGTTAAGT 50 *** ** * ** ** ** * * ** *** ** * consensus_9581#0 TGTGTTTGTTCTACCGACTAATAGTTTGAGTGATGGTGTCGACCGCTTGTAAGCGTCGTG 120 consensus_9581#1 GGGAAACGAGGTGGGAATGCATAGAC--AGCTATGAGGTTG---GCTTACAAGCAC---- 101 * * * * **** ** *** ** * **** **** consensus_9581#0 CAGTTTTCACTCGGGATCAATGTAGTAGAATGGTGTTAGTTGGTTGTCAGTTTCCACTGA 180 consensus_9581#1 ---TCACCCTTTAGAGAAAGCGTAATAGCTCA---CTAGTC--TAGTCGTTCTGCGCGGA 153 * * * * * *** *** **** * *** * * * * ** consensus_9581#0 GTCATATGATCGTTCATTTGTTGGGAATT-AAGCTCCTTTCATCGAAGTGGGTGTCTGTG 239 consensus_9581#1 AG-ATGTAACGGTGCTCAAACTGTGCACCGAAACTGCTGATATCAAA--TGATAT----- 205 ** * * ** * ** * * ** ** ** *** ** * * * consensus_9581#0 CAGATTTGATTATGTGTTATTTATTTGTGACACGTAACGTGTTTGGTACAATTGAGTGCT 299 consensus_9581#1 --GGTCTGGGATCGTTCTGTTTGTCTGT------TAAGGTGTCTTGTTG---CAGATGCT 254 * * ** ** * *** * *** *** **** * ** **** consensus_9581#0 AGGAAACGCACCATACGATACGAAGTGAAAATGGTGTTTAAAGAGACGGAAGTGCTGTGG 359 consensus_9581#1 GG---ACATATCATAATTGCCAATGCTGGCATGAT--TAACTATAAAGGGAGTG----AA 305 * ** * **** * * * *** * * * * ** **** consensus_9581#0 AAGTCCTGTAAATGCGATGACAGGACTACCAA-ATAATCACCACTGGCTTTTATTCTGAG 418 consensus_9581#1 CAGCTTCCTCACCGAGAGCGCAAGGTTTCCTACGCAACTATCATCG--TCGTATGGTGAC 363 ** * * * ** ** * * ** * ** * ** * * *** *** consensus_9581#0 CCATGTTCAGTGACGTTTCACTGCACTGAGTTGTACGATTGATAGGAGAAGGACCCTTGT 478 consensus_9581#1 TC--GGCCCCTAACGTTACGCAGAAATGCGTAACCTAATGGGAAACACGTCAATATTTCT 421 * * * * ***** * * * * ** ** ** * * * * ** * consensus_9581#0 CGAGTTACGTTGTAGTCGTGGTCGCGACCAGGACTTATTTAGATTTTGATGATGTATAGA 538 consensus_9581#1 GTA--------------------------------------------------------- 424 * consensus_9581#0 GAAGCTGTGACGGTGTTTTACAATTTGTGGGAAAGTCGGATAATGTATTGTTGTGCTTAT 598 consensus_9581#1 ------------------------------------------------------------ consensus_9581#0 GTGACATGTTGCTTGTGCTCAGCTAATGAATTGATAACTGGTTGTCACCCATTTTGTGTT 658 consensus_9581#1 ------------------------------------------------------------ consensus_9581#0 TCAAGTGGGCATCATGCCTTTCGGATGTGTGCAACGTGTTATTTTTAAGCTTTTTAAGGG 718 consensus_9581#1 ------------------------------------------------------------ consensus_9581#0 GTACACTTGCCAAATGTAGGGCCTCGATTAATGAAGTTGCTGGTTTTATTTACGTCAAGA 778 consensus_9581#1 ------------------------------------------------------------ consensus_9581#0 CAATTTGATTGAGCAATGAATTTGTTGGCGAATACCGTATAAGTAGTTGTAGAAGTAATA 838 consensus_9581#1 ------------------------------------------------------------ consensus_9581#0 AAAGAAGAAGGAGGGTGAGCGGGTGTTGATGTGAAAGTGAGAGAATGCAGGGTAAGTTTT 898 consensus_9581#1 ------------------------------------------------------------ consensus_9581#0 TATTCGGTGGCGTGAATGGATGTGGCAAGAGATCAGTTATGGGCTTTGGTCTGTTGGATT 958 consensus_9581#1 ------------------------------------------------------------ consensus_9581#0 TATGCCTGCCTAATGAAGCGTTTAGTGAATGTTTAATAAAGGGCATCTGANCAAGGCTGG 1018 consensus_9581#1 ------------------------------------------------------------ consensus_9581#0 TTAATAAGCCTAGTGCTTCAGTGATGCNCAAATGGACGTAG 1059 consensus_9581#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||