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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9585#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 793 fasta sequence
[CTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGGTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTGTGCCTTCCCACATCGTTTCCCACTTAACTAGGAATTTGGGGCCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGACGACGGACGTTAGCACCCGCCGTCTGTCTCCCGGATATCACTCATCGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAAACAGTGCTCTACCCCCAATGGTATTCGTCCGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCACCGAGTTTGATTAGCCTTTCACCCCTATCCACAAGTCATCCCCTGGCTTTTCAAACAGTGGGTTCGGTCCTCCGGTGCCTGTTACGGCACTTTCAACCTGCTCATGGATAGATCACTCGGTTTCGGGTCTATACCCTGCAACTTAATCGCCCTATTAAG-ACTCGGTTTCCCTACGGCT-CCCCT-A-ACGGTTAACCTTGCTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCA-CCCAACAAGTGGGCTCCGACTGCTTGTATGCACACGGTTTCAGGTTCTATTTCACTTCCCTAACAGGGG-TTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCNGTCAGTCAGGAGTATTTA-CCCTGGAA-GATGGTCCCCCCA-TCTTCAGAC-AGAATTCACGTGTCTCGGCCTACTTAATATGTC-CATTTGCAGTTTCGCATACAGGACTATCACCT]
[+] EMBL CD145348 [CTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGGTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTGTGCCTTCCCACATCGTTTCCCACTTAACTAGGAATTTGGGGCCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGACGACGGACGTTAGCACCCGCCGTCTGTCTCCCGGATATCACTCATCGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAAACAGTGCTCTACCCCCAATGGTATTCGTCCGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCACCGAGTTTGATTAGCCTTTCACCCCTATCCACAAGTCATCCCCTGGCTTTTCAAACAGTGGGTTCGGTCCTCCGGTGCCTGTTACGGCACTTTCAACCTGCTCATGGATAGATCACTCGGTTTCGGGTCTATACCCTGCAACTTAATCGCCCTATTAAG ACTCGGTTTCCCTACGGCT CCCCT A ACGGTTAACCTTGCTACAGAATATAAGTCGCTGACCCATTATACANAAGGTACGCCGTCACCCCAAC AGTGGGCTCCGACTGCTTGTATGCACACGGTTTCAGGTTCTATTTCACTTCCCTAACAGGGGNNTCTTTTCGCC TTCCCTCACNGTACTGGNTCACTATCNGTCAGTCAGGAGTATTTA CCCTGGNA GATGGTCCCCCCA TCTTCAGAC AGAATTCACGTGTCTCGGCCTACTTAATATGTC CATTTGCAGTTTTCCATACAGGACTATCAC ]
[+] EMBL CD145285 [CTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGGTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTGTGCCTTCCCACATCGTTTCCCACTTAACTAGGAATTTGGGGCCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGACGACGGACGTTAGCACCCGCCGTCTGTCTCCCGGATATCACTCATCGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAAACAGTGCTCTACCCCCAATGGTATTCGTCCGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCACCGAGTTTGATTAGCCTTTCACCCCTATCCACAAGTCATCCCCTGGCTTTTCAAACAGTGGGTTCGGTCCTCCGGTGCCTGTTACGGCACTTTCAACCTGCTCATGGATAGATCACTCGGTTTCGGGTCTATACCCTGNCACTTAATCGCCCTATTAAGAACTC GTTTCCCTACAGCTCCCCCTAA ACGG TAACCTTGCTACAGAATATAAGTCGCTGACCCATTATACAAAAAGTACGCCGTCA CCCAACAAGTGGGCTCCGACTGCTTGTATGCACACGGNTTCAGGNTCTATTTCACTTCCCTAACAGGGG TTCTTTTCGCCTTTCCCTCA GGTACTGGTTCACTATC GTCAGTCAAGAG ATTTA GCCTGGAAGGATGG CCCCCCATTCTCAAAAC AG ATTAACG GGCTTCGCCTAC TAAAAGGCC CATTGGCAG TTCGCATA AGGACTtaac ]
[+] EMBL CD145297 [CTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGGTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTGTGCCTTCCCACATCGTTTCCCACTTAACTAGGAATTTGGGGCCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGACGACGGACGTTAGCACCCGCCGTCTGTCTCCCGGATATCACTCATCGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAAACAGTGCTCTACCCCCAATGGTATTCGTCCGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCACCGAGTTTGATTAGCCTTTCACCCCTATCCACAAGTCATCCCCTGGCTTTTCAAACAGAGGGTTCGGTCCTCCGGTGCCTGTTACGGCACTTTCAACCTGCTCATGGATAGATCACTCGGTTTCGGGTCTATACCCTGCAACTTAATCGCCCTATTAAG ACTCGGTTTCCCTACGGCT CCCCT AGACGGTTAACCTTGCTACAGAATATA ]
[+] EMBL CD145255 [CTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGGTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTGTGCCTTCCCACATCGTTTCCCACTTAACTAGGAATTTGGGGCCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGACGACGGACGTTAGCACCCGCCGTCTGTCTCCCGGATATCACTCATCGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAAACAGTGCTCTACCCCCAATGGTATTCGTCCGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCACCGAGTTTGATTAGCCTTTCACCCCTATCCACAAGTCATCCCCTGGCTTTTCAAACAGTGGGTTCGGTCCTCCGGTGCCTGTTACGGCACTTTCAACCTGCTCATGGATAGATCACTCGGTTTCGGGTCTATACCCTGCAACTTAATCGCCCTATTAAG ACTCGGTTTCCCTACGGCT CCCC ]
[+] EMBL CD145237 [CTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGGTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTGTGCCTTCCCACATCGTTTCCCACTTAACTAGGAATTTGGGGCCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGACGACGGACGTTAGCACCCGCCGTCTGTCTCCCGGATATCACTCATCGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAAACAGTGCTCTACCCCCAATGGTGTTCGTCCGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCACCGAGTTTGATTAGCCTTTCACCCCTATCCACAAGTCATCCCCTGGCTTTTCAAACAGTGGGTTCGGTCCTCCGGTGCCTGTTACGGCACTTTCAACCTGCTCATGGATAGATCACTCGGTTTCGGGTCTATACCCTGCAACTTAATCGCCCTATTAAG ACTCGGTTTCCCTAC ]
[-] EMBL CD145195 [ GAGGCGCTACNTAAATAGCTTTCGGGGAGAACCAGCTATCACCGAGTTTGATTAGCCTTTCACCCCTATCCACAAGTCATCCCCTGGCTTTTCAAACAGTGGGTTCGGTCCTCCGGTGCCTGTTACGGCACTTTCAACCTGCTCATGGATAGATCACTCGGTTTCGGGTCTATACCCTGCAACTTAATCGCCCTATTAAG ACTCGGTTTCCCTACGGCT CCCCTAA ACGGTTAACCTTGCTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCA CCCAACAAGTGGGCTCCGACTGCTTGTATGCACACGGTTTCAGGTTCTATTTCACTCCCCTAACAGGGG TTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAG GATGGTCCCCCCA TCTTCAGACAAGATTTCACGTGTCTCGCCCTACTTAATATGTCGCATTTGCAGTTTCGCATACAGGACTATCACCT]
consensusID : consensus_9585#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 679 fasta sequence
[CCCGAGTTACGGTGCTATG-TGCATAG-TCCTTCACCCGAG-TCTCTCAAGCG-CTTGGGATCTCACCCTGCCTACTTGTG-CGGATTACGGTACGGTCCAACCGTAGCTGAAGCTTAGAGGA-TTTCCTGGAAGCGTGGCGTCAGTGACTTCGCTCAAAGAGCTCGTCTCGGTGCTCGGCGTAGATGAGAGCGGATTTGCATACTCTCAACGCCTACCTCCTTTCCCCGGGACTACCAACGCCCGGTACACCTAGCCTTCTCCGTCCCCCCATCGCACTACAGTCAGGTGCGGGAATATTAACCCGCTTCCCATCGACTACGCATTTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATGAACGTTGCGCGAGGAAACCTTGGGCTTTCGGCGGGGAGGCTTTTCACCCCCCTTATCGTTACTCATGTCAGCATTCGCACTTCCGATACCTCCAGCAAGCCTTACGACTCACCTTCACAGGCTTACGGAACGCTCCTCTACCGCGCATTCAAAGAATGCACCCCGAGCTTCGGTATATCGCTTAGCCCCGTTAAATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAGGGTGGCTGCTTATAAGCCAACCTCCTGGCTGTCTATGCCTTCCCACATCGTTTTCCACTTAGCGATAATTTTGG]
[-] EMBL CD086332 [CCCGAGTTACGGTGCTATG TGCATAG TCCTTCACCCGAG TCTCTCAAGCG CTTGGGATCTCACCCTGCCTACTTGTG CGGATCACGGTTCGGTCCAACCGTAGCTGAAGC TAGAGGA TTTCCTGGAAGCGTGGCGTCAGTGACTTCGCTCAAAGAGCTCGTCTCGGTGCTCGGCGTAGATGAGAGCGGATTTGCATACTCTCAACGCCTACTTCCTTTCCCCGGGACTACCAACGCCCGGTACACTTAGCTTTCTCCGTCCCCCCATCGCANTACAGTCAGGTGCGGGAATATTAACCCGCTTCCCATCGACTACGCATTTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATGAACGTTGCGCGAGGAAACCTTGGGCTTTCGGCGGGGAGGCTTTTCACCCCCCTTATCGTTACTCATGTCAGCATTCGCACTTCCGATACCTCCAGCAAGCCTTACGACTCACCTTCACAGGCTTACGGAACGCTCCTCTACCGCGCATTCAAAGAATGCACCCCGAGCTTCGGTATATCGCTTAGCCCCGTTAAATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAGGGTGGCTGCTTATAAGCCAACCTCCTGGCTGTCTATGCCTTCCCACATCGTTTTCCACTTAGCGATAATTTTGG]
[+] EMBL CD086321 [ gaAGTTACGGTGCTATGTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGGATCTCACCCTGCCTACCTGTGTCGGATTACGGTACGGTCCAACCGTAGCTGAAGCTTAGAGGATTTTCCTGGAAGCGTGGCGTCAGTGACTTCGCTCAAAGAGCTCGTCTCGGTGCTCGGCGTAGATGAGAGCGGATTTGCCTACTCTCAACGCCTACCTCCTTTCCCCGGGACTACCAACGCCCGGTACACCTAGCCTTCTCCGTCCCCCCATCGCACTACAGTCGGGTGCGGGAATATTAACCCGCTTCCCATCGACTACGCATTTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATGAACGTTGCGCGAGGAAACCTTGGGCTTTCGGCGGGGAGGCTTTTCACCCCCCTTATCGTTACTCATGTCAGCATTCGCACTTCCGATACCTCCAGCAAGCCTTACGACTCACCTTCACAGGCTTACGGAACGCTCCTCTACCGCGCATTCAAAGAATGCACCCCGAGCTTCGGTATATCGCTTAGCCCCGTTAAATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGC ]
[-] EMBL CD086338 [ TTACGGTACGGTCCAACCGTAGCTG AGCTTAGAGGA TTTCCTGGAAGCGTGGCGTCAGTGACTTCGCTCAAAGAGCTCGTCTCGGTGCTCGGCGTAGATGAGAGCGGATTTGCATACTCTCAACGCCTACCTCCTTTCCCCGGGACTACCAACGCCCGGTACACCTAGCCTTCTCCGTCCCCCCATCGCACTACAGTCAGGTGCGGGAATATTAACCCGCTTCCCATCGACTACGCATTTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATGAACGTTGTGCGAGGAAACCTTGGGCTTTCGGCGGGGAGGCTTTTCACCCCCCTTATCGTTACTCATGTCAGCATTCGCACTTCCGATACCTCCAGCAAGCCTTACGACTCACCTTCACAGGCTTACGGAACGCTCCTCTACCGCGCATTCAAAGAATGCACCCCGAGCTTCGGTATATCGCTTAGCCCCGTTAAATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAGGGTGGCTGCTTCTAAGCCAACCTGCTGGCTGTCTATGCCTTCCCACATCGTTTTCCACTTAGCGATAATTTTGG]
consensusID : consensus_9585#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence
[AAATTGTGACAAACTGGCTATATCTAAATAATTCATTCAGATTACACATACAACAAAAAGACGATCAAAATTTATCTGAAGGGGGTTTTGTGGAGGTTTTAGTAATTTTATATGGCAGTAACCAGTGGAGTTCAACCAGGTCTGTTGGGAGGTATCAACTCACTGAAGAAATTAGTGAATGATTGCTCAATTTCATGAATTAGTTAAAGTTAGACAATAACACAGTTGGATGCCGGCT]
[+] EMBL CD171452 [AAATTGTGACAAACTGGCTATATCTAAATAATTCATTCAGATTACACATACAACAAAAAGACGATCAAAATTTATCTGAAGGGGGTTTTGTGGAGGTTTTAGTAATTTTATATGGCAGTAACCAGTGGAGTTCAACCAGGTCTGTTGGGAGGTATCAACTCACTGAAGAAATTAGTGAATGATTGCTCAATTTCATGAATTAGTTAAAGTTAGACAATAACACAGTTGGATGCCGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9585#0 CTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGGTGGCTGCTT 60
consensus_9585#1 -----------------------------------------------------------C 1
consensus_9585#2 ------------------------------------------------------------
consensus_9585#0 CTAAGCCAACCTCCTAGCTGTCTGTGCCTTCCCACATCGTTTCCCACTTAACTAGGAATT 120
consensus_9585#1 CCGAGTTACGGTGCTATGTGCATAGTCCTTCACCCGA-GTCTCTCAAGCGCTTGGGATCT 60
consensus_9585#2 ------------------------------------------------------------
consensus_9585#0 TGGGGCCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGACGACGGACGTTAGCACCCGCC 180
consensus_9585#1 CA---CCCTGCCTACTTGTGCGGATTACGGTACGGTC--CAACCGTAGCTGAAGCTTAGA 115
consensus_9585#2 ------------------------------------------------------------
consensus_9585#0 GTCTGTCTCCCGGATATCACTCATCGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGG 240
consensus_9585#1 GG--ATTTCCTGGAAGCGTGGCGTCAGTG----------ACTTCGCTCAAAGAGCTCGTC 163
consensus_9585#2 ------------------------------------------------------------
consensus_9585#0 ATGACCCCCTAGCCGAAACAGTGCTCTACCCCCAATGGTATTCGTCCGAGGCGCTACCTA 300
consensus_9585#1 TCGGTGCTCGGCGTAGATGAGAGCG-------GATTTGCATACTCTCAACGC-CTACCTC 215
consensus_9585#2 ------------------------------------------------------------
consensus_9585#0 AATAGCTTTCGGGGAGAACCAGCTATCACCGAGTTTGATTAGCCTTTCACCCCTATCCAC 360
consensus_9585#1 -----CTTTCCCCGGGA--CTACCAACGCCCGGTACACCTAGCCTTCTCCGTCCCCCCAT 268
consensus_9585#2 ------------------------------------------------------------
consensus_9585#0 AAGTCATCCCCTGGCTTTTCAAACAGTGGGTTCGGTCCTCCGGTGCCTGTTACGGCACTT 420
consensus_9585#1 CGCACTACAGTCAGGTGCGGGAATATTAA--CCCGCTTCCCATCGACTAC----GCATTT 322
consensus_9585#2 ------------------------------------------------------------
consensus_9585#0 TCAACCTGC-TCATGGATAGA-TCACTCGGTTTCGGGTCTATACCCTGCAACTTAATCGC 478
consensus_9585#1 CTGCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGA-TGAACGTTGCGCGAGGAAACCTT 381
consensus_9585#2 ------------------------------------------------------------
consensus_9585#0 CCTATTAAGACTCGGTTTCCCTACGGCTCCCCTAACGGTTAACCTTGCTACAGAATATAA 538
consensus_9585#1 GGGCTTTCGGCGGGGAGGCTTTTCA-CCCCCCTTATCGTTACTCATGT--CAGCATTCGC 438
consensus_9585#2 --------------------------------AAATTGTGACAAAC-TGGCTATATCTAA 27
* ** * * **
consensus_9585#0 GTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCAACAAGTGGGCTCCGACTGCTTG 598
consensus_9585#1 ACTTCCGATACCTCCAGCAAGCCTTACGACTCACCTTCACAGGCTTACG--GAACGCTCC 496
consensus_9585#2 ATAATTCATTCAGATTACACATACAACAAAAAGACGATCAAAATTTATCT-GAAGGGGGT 86
* * ** ** * * ** *
consensus_9585#0 TATGCACACGGTTTCAGGTTCTATTTCACTTCCCTAACAGGGGTTCTTTTCGCCTTTCCC 658
consensus_9585#1 TCTAC-CGCGCATTCAAAGAATGCACCCCGAGCTTCGGTATATCGCTTAGCCCCGTTAAA 555
consensus_9585#2 TTTGT-GGAGGTTTTAGTAATTTTATATGGCAGTAACCAGTGGAGTTCAACCAGGTCTGT 145
* * * ** * * * * *
consensus_9585#0 TCA-CGGTACTGGTTCACT--ATCNGTCAGTCA-GGAGTATTTACCCTGGAAGATGGTCC 714
consensus_9585#1 TCTTCCGCGCAGGCCGACTCGACCAGTGAGCTA-TTA-CGCTTTCTTTAAAGGGTGGCTG 613
consensus_9585#2 TGGGAGGTATCAACTCACTGAAGAAATTAGTGAATGATTGCTCAATTTCATGAATTAGTT 205
* * *** * * ** * * * * *
consensus_9585#0 CCCCATCTTCAGACAGAATTCACG-TGTCTCGGCCTACTTAATATGTCCATTTGCAGTTT 773
consensus_9585#1 C----TTATAAGCCAACCTCCTGGCTGTCTATGCCTTCCCA-CAT---CGTTTTCCACTT 665
consensus_9585#2 A----AAGTTAGACAATAACACAGTTGG--ATGCCGGCT--------------------- 238
* ** ** * ** *** *
consensus_9585#0 CGCATACAGGACTATCACCT 793
consensus_9585#1 AGCG-ATAATTTTGG----- 679
consensus_9585#2 --------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||