These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 925 fasta sequence [ACGTAAAAGCCTACTTGCAACACCTATTTCAGAACTTGGTCCAGAGCATGCGAATGCTGTCGCTGCAGCTGTATCATGTTTTACTAACAGTTTGTCGTCACAAGTTGGTATCGGTTCATCTGTTACTAGTGATTCTCAATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAATACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCGATCAGTGATCGGAATGCACTCTCTCCTACATTCCTACACTTGCTGTTTATTGGAAATTCATCTTAAAGTTATTTCAAAAAGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACTTTGGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCAGAATCATCTTCCTAGTTAATATTTATTATTATTATTATTATTATTATTGTCATTAGCGATTGAATTTGATCATATATACAATAGTGCCTTACAGTATAAAACAAACTGAAAATCTGCAGTTCGGATTCTGAACTATATATATATATATATATTCCTCGATTATGGGTTGCATATCGCAAAGCAAGAATCTTGTTTATCAAACTTTTCTATTGGATGACTTATCATCTATTGTTTTGATATCATGACTAAAGATTGGATTTTATTTAATATTTTGTATAACTAATAATCCAATGTTTAACGTTATACAACACTTTTTATGATCAAATAAATCACGATTCTTGTTAGTGTTACTATCATACTACCATTAAGTTTGCTACTTGACTTTGTAAAACANATCTGATCTATTTTTAAATAACCTCTATTAGTGTTTTTATTGTCTGTTTAGTGA] [-] EMBL CD111424 [ACGTAAAAGCCTACTTGCAACACCTATTTCAGAACTTGGTCCAGAGCATGCGAATGCTGTCGCTGCAGCTGTATCATGTTTTACTAACAGTTTGTCGTCACAAGTTGGTATCGGTTCATCTGTTACTAGTGATTCTCAATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAATACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCGATCAGTGATCGGAATGCACTCTCTCCTACATTCCTACACTTGCTGTTTATTGGAGATTCATCTTAAAGTTATTTCAAAAAGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACTTTGGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCAG ] [+] EMBL CD111444 [ CTAGTGATTCTCAATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAATACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCGATCAGTGATCGGAATGCACTCTCTCCTACATTCCTACACTTGCTGTTTATTGGAAATTCATCTTAAAGTTATTTCAAAAAGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACTTTGGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCA ] [+] EMBL CD191256 [ ATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAATACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCTATCAGTGATCGGAATGCACTCTCTCCTACATTCCTACACTTGCTGTTTATTGGAAATTCATCTTAAAGTTATTTCAAAAAGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACTTTGGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCAG ] [+] EMBL CD191288 [ ATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAATACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCGATCAGTGATCGGAATGCACTCTCTCCTACATTCCTACACTTGCTGTTTATTGGAAATTCATCTTAAAGTTATGGCAAAAAGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACTTTGGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCAG ] [+] EMBL CD191294 [ ATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAATACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCTATCAGTGATCGGAATGCACTCTCTCCTACATTCCTACACTTGCTGTTTATTGGAAATTCATCTTAAAGTTATTTCAAAAAGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACTTTGGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCAG ] [+] EMBL CD078876 [ TGACCGTTTCATATTTTTACTTTGGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCAGAATCATCTTCCTAGTTAATATTTATTATTATTATTATTATTATTATTGTCATTAGCGATTGAATTTGATCATATATACAATAGTGCCTTACAGTATAAAACAAACTGAAAATCTGCAGTTCGGATTCTGAACTATATATATATATATATATTCCTCGATTATGGGTTGCATATCGCAAAGCAAGAATCTTGTTTATCAAACTTTTCTATTGGATGACTTATCATCTATTGTTTTGATATCATGACTAAAGATTGGATTTTATTTAATATTTTGTATAACTAATAATCCAATGTTTAACGTTATACAACACTTTTTATGATCAAATAAATCACGATTCTTGTTAGTGTTACTATCATACTACCATTAAGTTTGCTACTTGACTTTGTAAAACANATCTGATCTATTTTTAAATAACCTCTATTAGTGTTTTTATTGTCTGTTTAGTGA] consensusID : consensus_9595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 384 fasta sequence [TGTACACGTTCTCCATCCATCCTTACAACAATCACATCCTGTTCATTTCACTTCCTTGACATCTCTACCACAATCATATACTACGTCTACTGGACGACACTCATATCCAGCCTGTGTATCAACTCAACATCATACACTTTCATCAGCTGCAGTTCCGAATTCTTCGTTATCTGTTACATCTACATTGTCACTTTGTAGCAGTGTGAATGTAACTACCAATTCCCACCCACCAATAGATTGTCAAAGTGATAGTTTCCTCCCCCATAATATAAAATCTAATAACCTCAGAAACATCGATGTACTTAAGTCTGTCACGTGCAGTTCAGAACCCAGTCCCGCTGACAGTGTTTTAACTAATGCTTGCATCAATACTAACATGGGTTA] [+] EMBL CD089669 [TGTACACGTTCTCCATCCATCCTTACAACAATCACATCCTGTTCATTTCACTTCCTTGACATCTCTACCACAATCATATACTACGTCTACTGGACGACACTCATATCCAGCCTGTGTATCAACTCAACATCATACACTTTCATCAGCTGCAGTTCCGAATTCTTCGTTATCTGTTACATCTACATTGTCACTTTGTAGCAGTGTGAATGTAACTACCAATTCCCACCCACCAATAGATTGTCAAAGTGATAGTTTCCTCCCCCATAATATAAAATCTAATAACCTCAGAAACATCGATGTACTTAAGTCTGTCACGTGCAGTTCAGAACCCAGTCCCGCTGACAGTGTTTTAACTAATGCTTGCATCAATACTAACATGGGTTA] [+] EMBL CD062930 [ CCTGTTCATTTCACTTCCTTGACATCTCTACCACAATCATATACTACGTCTACTGGACGACACTCATATCCAGCCTGTGTATCAACTCAACATCATACACTTTCATCAGCTGCAGTTCCGAATTCTTCGTTATCTGTTACATCTACATTGTCACTTTGTAGCAGTGTGAATGTAACTACCAATTCTCACCCACCAATAGATTGTCAAAGTGATAGTTTCCTCCCCCATAATATGGAATCTAATAACCTCAGAAACATCGATGTACTTAAGTCTGTCACGTGCAGTTCAGAACCCAGTCCCGCTGACAGT ] consensusID : consensus_9595#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [GTGTTATGCAAATAGCTTCACCCGGTATTAGATGATGAAGTGTCTACACTGGAACCGTTCACTACAGATTGAGAATTGGTAGTTACATTCACACTGCTACAAAGTGACAATGTAGATGTAACAGATAACGAAGAATTCGGAACTGCAGCTGATGAAAGTGTATGATGTTGAGTTGATACACAGGCTGGATATGAGTGTCGTCCAGTAGACGTAGTATATGATTGTGGTAGAGATGTCAAGGAAGTGAAATGAACAGGATGTGATTGTTG] [+] EMBL CD147865 [GTGTTATGCAAATAGCTTCACCCGGTATTAGATGATGAAGTGTCTACACTGGAACCGTTCACTACAGATTGAGAATTGGTAGTTACATTCACACTGCTACAAAGTGACAATGTAGATGTAACAGATAACGAAGAATTCGGAACTGCAGCTGATGAAAGTGTATGATGTTGAGTTGATACACAGGCTGGATATGAGTGTCGTCCAGTAGACGTAGTATATGATTGTGGTAGAGATGTCAAGGAAGTGAAATGAACAGGATGTGATTGTTG] consensusID : consensus_9595#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [GCCAAAGTTGCTGGCCTTCCTGGACCTCATTCTTGGAATCCAAACGTTGTAGCTAATTTTATTTCTACATTGCCAGGATGTAAACAGTTCGCTTGTAAATTCATTGAGAATGAAATAGATGGAGCTGCTTTATTATGCCTTGAACAACACGATCTGATGCATGTATTAGGTATGAAACTGGGTCCTGCTGTAAAAGTATCTACTGCTATTCAAGCTTTACGTAAAAGCCTACTTGCAACACCTATTTCAGAA] [+] EMBL CD170189 [GCCAAAGTTGCTGGCCTTCCTGGACCTCATTCTTGGAATCCAAACGTTGTAGCTAATTTTATTTCTACATTGCCAGGATGTAAACAGTTCGCTTGTAAATTCATTGAGAATGAAATAGATGGAGCTGCTTTATTATGCCTTGAACAACACGATCTGATGCATGTATTAGGTATGAAACTGGGTCCTGCTGTAAAAGTATCTACTGCTATTCAAGCTTTACGTAAAAGCCTACTTGCAACACCTATTTCAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9595#0 ACGTAAAAGCCTACTTGCAACACCTATTTCAGAACTTGGTCCAGAGCATGCGAATGCTGT 60 consensus_9595#3 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#2 ------------------------------------------------------------ consensus_9595#0 CGCTGCAGCTGTATCATGTTTTACTAACAGTTTGTCGTCACAAGTTGGTATCGGTTCATC 120 consensus_9595#3 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#2 ------------------------------------------------------------ consensus_9595#0 TGTTACTAGTGATTCTCAATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAA 180 consensus_9595#3 ------------------------------------------------------------ consensus_9595#1 --------------------------------------------------TGTACACGTT 10 consensus_9595#2 -------------------------------------------------------GTGTT 5 consensus_9595#0 TACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCGAT 240 consensus_9595#3 -------------------------GCCAAAGTTGCTGGCCTTCCTGGACCTCATTC--- 32 consensus_9595#1 CTCCATCCATCCTTACAACAATCACATCCTGTTCATTTCACTTCCTTGACATCTCTACCA 70 consensus_9595#2 ATGCAAATAGCTTCACC-CGGTATTAGATGATGAAGTGTCTACACTGGAACCGTTCACTA 64 * ** * consensus_9595#0 CAGTGATCGGAATGCACTCTCTC-CTACATTCCTACACTTGCTGTTTATTGGAAATTCAT 299 consensus_9595#3 TTGGAATCCAAACGTTGTAGCTAATTTTATTTCTACATTGCCAGGATGTAAACAGTTCGC 92 consensus_9595#1 CAATCATATACTACGTCTACTGGACGACACTCATATCCAGCCTGTGTATCAACTCAACAT 130 consensus_9595#2 CAGATTGAGAATTGGTAGTTACATTCACACTGCTACAAAGTGACAATGTAGATGTAACAG 124 * * ** * * * consensus_9595#0 CTTAAAGTTATTTCAAAA-AGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACT 358 consensus_9595#3 TTGTAAATTCATTGAGAA-TGAAATAGATGG---------AGCTGCTTTAT---TATGCC 139 consensus_9595#1 CATACACTTTCATCAGC--TGCAGTTCCGAATTCTTCGTTATCTGTTACAT----CTACA 184 consensus_9595#2 ATAACGAAGAATTCGGAACTGCAGCTGATGA---------AAGTGTATGATG---TTGAG 172 * * * ** * consensus_9595#0 TTGG-GCTTT-CGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGT 416 consensus_9595#3 TTGA-ACAACACGATCTGATGCATGTATTAGGTATGAAACTGGGTCCTGCTGTAAAAGTA 198 consensus_9595#1 TTGTCACTTTGTAGCAGTGTGAATGT---AACTACCAATTCCCACCCACCAATAGATTGT 241 consensus_9595#2 TTGATAC------ACAGGCTGGATAT---GAGTGTCGTCCAGTAGACG-TAGTATATGAT 222 *** * ** * * ** * consensus_9595#0 TTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTC 476 consensus_9595#3 TCTACTGCTAT------TCAAGCTTTACGTAAAAGCCTACTTGC--AACACCTAT--TTC 248 consensus_9595#1 CAAAGTGATAGTTT-CCTCCCCCATAATATAAAATCTAATAACCTCAGAAACATCGATGT 300 consensus_9595#2 TGTGGTAGAGATGTCAAGGAAGTGAAATGAACAGGATGTGATTGTTG------------- 269 * * consensus_9595#0 AGAATCATCTTCCTAGTTAATATTTATTATTATTATTATTATTATTATTGTCATTAGCGA 536 consensus_9595#3 AGAA-------------------------------------------------------- 252 consensus_9595#1 ACTTAAGTCTGTCACGTGCAGTTCAGAACCCAGTCCCGCTGACAGTGTTTTAACTAATGC 360 consensus_9595#2 ------------------------------------------------------------ consensus_9595#0 TTGAATTTGATCATATATACAATAGTGCCTTACAGTATAAAACAAACTGAAAATCTGCAG 596 consensus_9595#3 ------------------------------------------------------------ consensus_9595#1 TTGCATCAATACTAACATGGGTTA------------------------------------ 384 consensus_9595#2 ------------------------------------------------------------ consensus_9595#0 TTCGGATTCTGAACTATATATATATATATATATTCCTCGATTATGGGTTGCATATCGCAA 656 consensus_9595#3 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#2 ------------------------------------------------------------ consensus_9595#0 AGCAAGAATCTTGTTTATCAAACTTTTCTATTGGATGACTTATCATCTATTGTTTTGATA 716 consensus_9595#3 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#2 ------------------------------------------------------------ consensus_9595#0 TCATGACTAAAGATTGGATTTTATTTAATATTTTGTATAACTAATAATCCAATGTTTAAC 776 consensus_9595#3 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#2 ------------------------------------------------------------ consensus_9595#0 GTTATACAACACTTTTTATGATCAAATAAATCACGATTCTTGTTAGTGTTACTATCATAC 836 consensus_9595#3 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#2 ------------------------------------------------------------ consensus_9595#0 TACCATTAAGTTTGCTACTTGACTTTGTAAAACANATCTGATCTATTTTTAAATAACCTC 896 consensus_9595#3 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#2 ------------------------------------------------------------ consensus_9595#0 TATTAGTGTTTTTATTGTCTGTTTAGTGA 925 consensus_9595#3 ----------------------------- consensus_9595#1 ----------------------------- consensus_9595#2 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||