These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1438 fasta sequence [TTTTACTCTTGTGATTTGTTGCATGTTTTAGGATATTTCAAACATGTCTAGTCGTGAGGCTCCAGCATCTATTTCAGCCATTCGTAATCCAA-A-CAGTCAGCTTGCTGGTCTACCACCTAGACCTCCTCTTTCAGATGCGGCTTTGTTTTCTTTGATTTTAACTGTTCGGGAGGCCGGTCGGCGTTTAGCAATGAGTGATTACGCCATCGCCACAGCTTGCACAATATTACACCGAGCTCTACGCGTTCTTACTACTGGTGATGAACAGCCAGTTACAACCCTCGCTACTTCTGGGTCAGCAACTGTCAATGGATCTGATTCAGTTTCCGGTTTCGACTCAATCGACCAATCTTTTAAACATAGCTTAGGAGATATCGATGCACATACGATCGCTATGGCATCTGTCAGTCTTGG-CGGTA-A-AGTACAAGAAGAACATCAACGGCTGCGTGATGTGATTGTTTCTTATTACAGGACACTTCACAAAAACCGTCGTAGTCCTCTGGAAGTCGGTGATGATTATGATCGCTTACGTGAAAGTCTTGTACAAACGGAATTATTTTTGATGCGATTGTTAGCTTATCACGTTCGTCGTCCTTCTCTACCACATCCATATCTAGTTCATTATCTTCATTCTTTACTCCATTGGGTTGGTAAAGGTATAGCACAACCATGCGGGTCCGATTTGAACGCTGGTGGAAATTCAGTAAATGCTTCTGCAATTGCATTAGCACGACTTCCCGGTTTGGCTTGGTCAATACTGGCGGATTCTTATCAGTCAGCTATGTGTTTAGATTTTGCCCCAGAGCATATCGCTGCAGCTGTACTGCATTTAGCTTTACGGATTGCTGGTGTTGAAATACCTGGTAATCGACACTCTGAAATGGCCTGGTGGCAGGCTATTTCAGATAGTTTGTCCCGTGAAATAGTTGAACAAATCCAACTTCGAGTAATGGATATTTATGCAGTGGATGATAAATTCAAAGCCAGTACACTTAATCGTTTCACTGATGAATTTTGAGTACAGTTTGTTGGCGAACAGCTTTGCATTTTTTATACTGTTTTGTCATGTACATTCGAAATGTATTGTAAAGAAAATTTAATATTCAAATTTGTTAACACTCGAGTTGTTTTGCATTGTTTCTTTCCACATTTTCCGTTTTTCATTTGACGATTTAGAATGATTTTTCGTGATTTTAAACATTGATTAATCAATAGTTTACTACTGTTTCCAAAATCCCATTCCTACTACAGACACTCGATCCTTTGAATATCCCAAAGTATCAATCATGTAGTTCAATGAGATGCATATACATACGTATATTTGTTACGGTGTTTTTGTATTCCTGCTTTTTACAAACGTCATATAGTTTCTTGTTGTGTTCATTTTCCAAGAACTACTTTTTGATGTATCCACTGGCGGATGTAAATAAATTAGTTG] [+] EMBL CD138288 [TTTTACTCTTGTGATTTGTTGCATGTTTTAGGATATTTCAAACATGTCTAGTCGTGAGGCTCCAGCATCTATTTCAGCCATTCGTAATCCAA A CAGTCAGCTTGCTGGTCTACCACCTAGACCTCCTCTTTCAGATGCGGCTTTGTTTTCTTTGATTTTAACTGTTCGGGAGGACGGTCGGCGTTTAGCAATGAGTGATTACGCCATCGCCACAGCTTGCACAAGAGTAat ] [+] EMBL CD196296 [ ATGTTTTAGGATATTTCAAACATGTCTAGTCGTGAGGCTCCAGCATCTATTTCAGCCATTCGTAATCCAA A CAGTCAGCTTGCTGGTCTACCACCTAGACCTCCTCTTTCAGATGCGGCTTTGTTTTCTTTGATTTTAACTGTTCGGGAGGCCGGTCGGCGTTTAGCAATGAGTGATTACGCCATCG ] [+] EMBL CD082213 [ acgaggcGATATTTCAAACATGTCTAGTCGTGAGGCTCCTGCATCTATTTCAGCCACTCGTAATCCAA A CAGTCAGCTTGCTGGTCTACCACCTAGACCTCCTCTTTCAGATGCGGCTTTGTTTTCTTTGATTTTAACTGTTCGGGAGGCCGGTCGGCGTTTAGCAATGAGTGATTACGCCATCGCCACAGCTTGCACAATATTACACCGAGCTCTACGCGTTCTTACTACTGGTGATGAACAGCCAGTTACAACCCTCGCTACTTCTGGGTCAGCAACTGTCAATGGATCTGATTCAGTTTCCGGTTTCGACTCAATCGACCAATCTTTTAAACATAGCTTAGGAGATATCGATGCACATACGATCGCTATGGCATCTATCAGTCTTGG CGGTA A AGTACAAGAAGAACATCAACGGCTGCGTGATGTGATTGTTTCTTATTACAGGACACTTCACAAAAACCGTCGTAGTCCTCTGGAAGTCGGTGATGATTATGATCGCTTACGTGAAAGTCTTGTACAAACGGAATTATTTTTGATGCGATTGTTAGCTTATCACGTTCGTCGTCCTTCTCTACCACATCCATATCTAGTTCATTATCTTCATTCTTTACTCCATTGGGTTGGTAAAGGTATAGCACAACCATGCGGGTCCGATTTGAACGCTGGT ] [+] EMBL CD150609 [ TCCAAGATCAGACAGCTTGCTGGTCTACCACCTAGACCTCCTCTTTCAGATGCGGCTTTGTTTTCTTTGATTTTAACTGTTCGGGAGGCCGGTCGGCGTTTAGCAATGAGTGATTACGCCATCGCCACAGCTTGCACAATATTACACCGAGCTCTACGCGTTCTTACTACTGGTGATGAACAGCCAGTTACAACCCTCGCTACTTCTGGGTCAGCAACTGTCAATGGATCTGATTCAGTTTCCGGTTTCGACTCAATCGACCAATCTTTTAAACATAGCTTAGGAGATATCGATGCACATACGATCGCTATGGCATCT ] [+] EMBL CD113889 [ TGTTGGTCTACCA CTAGACCTCCTCTTTCAGATGCTGCTTTGTTTTCTTTGATTTTAACTGTTCGGGAGGCCGGTCGGCGTTTAGCAATGAGTGATTACGCCATCGCCACAGCTTGCACAATATTACACCGAGCTCTACGCGTTCTTACTACTGGTGATGAACAGCCAGTTACAACCCTCGCTACTTCTGGGTCAGCAACTGTCAATGGATCTGATTCAGTTTCCGGTTTCGACTCAATCGACCAATCTTTTAAACATAGCTTAGGAGATATCGATGCACATACGATCGCTATGGCATCTGTCAGTCTTGG CGGTA A AGTACAAGAAGAACATCAACGGCTGCGTGATGTGATTGTTTCTTATTACAGGACACTTCACAAAAACCGTCGTAGTCCTCTGGAAGTCGGTGATGATTATGATCGCTTACG ] [+] EMBL CD113801 [ gTATAACACCGAGCTCTACGCGTTCTTACTACTGGTGATGAACAGCCAGTTACAACCCTCGCTACTTCTGGGTCAGCAACTGTCAATGGATCTGATTCAGTTTCCGGTTTCGACTCAATCGACCAATCTTTTAAACATAGCTTAGGAGATATCGATGCACATACGATCGCTATGGCATCTGTCAGTCTTGGCCGGTACACAGTACAAGAAGAACATCAACGGCTGCGTGATGTGATTGTTTCTTATTACAGGACACTTCACAAAAACCGTCGTAGTCCTCTGGAAGTCGGTGATGATTATGATCGCTTACGTGAAAG ] [+] EMBL CD113906 [ CACCGAGCTCTAAGCGTACTTACTACTGGTGATGAACAGCCAGTTACAACCCTCGCTACTTCTGGGTCAGCAACTGTCCATGGATCTGATTCAGTTTCCGGTTTCGACTCAATCGACCAATCTTTTAAACATAGCTTAGGAGATATCGATGCACATACGATCGCTATGGCATCTGTCAGTCTTGG CGGTA C AGTACAAGACGA ] [-] EMBL CD186526 [ TGATGCGATTGTTAGCTTATCACGTTCGTCGTCCTTCTCTACCACATCCATATCTAGTTCATTATCTTCATTCTTTACTCCATTGGGTTGGTAAAGGTATAGCACAACCATGCGGGTCCGATTTGAACGCTGGTGGAAATTCAGTAAATGCTTCTGCAATTGCATTAGCACGACTTCCCGGTTTGGCTTGGTCAATACTGGCGGATTCTTATCAGTCAGCTATGTGTTTAGATTTTGCCCCAGAGCATATCGCTGCAGCTGTACTGCATTTAGCTTTACGGATTGCTGGTGTTGAAATACCTGGTAATCGACACTCTGAAATGGCCTGGTGGCAGGCTATTTCAGATAGTTTGTCCCGTGAAATAGTTGAACAAATCCAACTTCGAGTAATGGATATTTATGCAGTGGATGATAA ] [-] EMBL CD075825 [ CCGTGAAATAGTTGAACAAATCCAACTTCGAGTAATGGATATTTATGCAGTGGATGATAAATTCAAAGCCAGTACACTTAATCGTTTCACTGATGAATTTTGAGTACAGTTTGTTGGCGAACAGCTTTGCATTTTTTATACTGTTTTGTCATGTACATTCGAAATGTATTGTAAAGAAAATTTAATATTCAAATTTGTTAACACTCGAGTTGTTTTGCATTGTTTCTTTCCACATTTTCCGTTTTTCATTTGACGATTTAGAATGATTTTTCGTGATTTTAAACATTGATTAATCAATAGTTTACTACTGTTTCCAAAATCCCATTCCTACTACAGACACTCGATCCTTTGAATATCCCAAAGTATCAATCATGTAGTTCAATGAGATGCATATACATACGTATATTTGTTACGGTGTTTTTGTATTCCTGCTTTTTACAAACGTCATATAGTTTCTTGTTGTGTTCATTTTCCAAGAACTACTTTTTGATGTATCCACTGGCGGATGTAAATAAATTAGTTG] consensusID : consensus_9597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [GGATCTTATCAGTCAGCTATGTGTTTAGATTTGCCCCAGGGCTATCGCTGCAGCTGTACTGCATTTAGCTTTACGGATTGCTGGTGTTGAAATACCTGGTAATCGACACTCTGAAATGGCCTGTTGGCAGGTATTTCAGATAGTTTGTCCCGTGAAATAGTTGAACAAATCCAACTTCGAGTAATGGATATTTATGCAGTGGATGATAAATTCAAAGCCAGTACACTTAATCGTTTCACTGATGAATTCTGAGTACAGTTTGTTGGCGAACAGCTTTGCATTTTTTATACTGTTTTGTCATGTACATTCGAAATGTATTGTAAAGAAAATCTAATATTCAAATTTGTTAACACTCGAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AI395211 [GGATCTTATCAGTCAGCTATGTGTTTAGATTTGCCCCAGGGCTATCGCTGCAGCTGTACTGCATTTAGCTTTACGGATTGCTGGTGTTGAAATACCTGGTAATCGACACTCTGAAATGGCCTGTTGGCAGGTATTTCAGATAGTTTGTCCCGTGAAATAGTTGAACAAATCCAACTTCGAGTAATGGATATTTATGCAGTGGATGATAAATTCAAAGCCAGTACACTTAATCGTTTCACTGATGAATTCTGAGTACAGTTTGTTGGCGAACAGCTTTGCATTTTTTATACTGTTTTGTCATGTACATTCGAAATGTATTGTAAAGAAAATCTAATATTCAAATTTGTTAACACTCGAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9597#0 TTTTACTCTTGTGATTTGTTGCATGTTTTAGGATATTTCAAACATGTCTAGTCGTGAGGC 60 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 TCCAGCATCTATTTCAGCCATTCGTAATCCAAACAGTCAGCTTGCTGGTCTACCACCTAG 120 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 ACCTCCTCTTTCAGATGCGGCTTTGTTTTCTTTGATTTTAACTGTTCGGGAGGCCGGTCG 180 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 GCGTTTAGCAATGAGTGATTACGCCATCGCCACAGCTTGCACAATATTACACCGAGCTCT 240 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 ACGCGTTCTTACTACTGGTGATGAACAGCCAGTTACAACCCTCGCTACTTCTGGGTCAGC 300 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 AACTGTCAATGGATCTGATTCAGTTTCCGGTTTCGACTCAATCGACCAATCTTTTAAACA 360 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 TAGCTTAGGAGATATCGATGCACATACGATCGCTATGGCATCTGTCAGTCTTGGCGGTAA 420 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 AGTACAAGAAGAACATCAACGGCTGCGTGATGTGATTGTTTCTTATTACAGGACACTTCA 480 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 CAAAAACCGTCGTAGTCCTCTGGAAGTCGGTGATGATTATGATCGCTTACGTGAAAGTCT 540 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 TGTACAAACGGAATTATTTTTGATGCGATTGTTAGCTTATCACGTTCGTCGTCCTTCTCT 600 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 ACCACATCCATATCTAGTTCATTATCTTCATTCTTTACTCCATTGGGTTGGTAAAGGTAT 660 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 AGCACAACCATGCGGGTCCGATTTGAACGCTGGTGGAAATTCAGTAAATGCTTCTGCAAT 720 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 TGCATTAGCACGACTTCCCGGTTTGGCTTGGTCAATACTGGCGGATTCTTATCAGTCAGC 780 consensus_9597#1 -------------------------------------------GGATCTTATCAGTCAGC 17 * ************** consensus_9597#0 TATGTGTTTAGATTTTGCCCCAGAGCATATCGCTGCAGCTGTACTGCATTTAGCTTTACG 840 consensus_9597#1 TATGTGTTTAGATTT-GCCCCAGGGC-TATCGCTGCAGCTGTACTGCATTTAGCTTTACG 75 *************** ******* ** ********************************* consensus_9597#0 GATTGCTGGTGTTGAAATACCTGGTAATCGACACTCTGAAATGGCCTGGTGGCAGGCTAT 900 consensus_9597#1 GATTGCTGGTGTTGAAATACCTGGTAATCGACACTCTGAAATGGCCTGTTGGCAGG-TAT 134 ************************************************ ******* *** consensus_9597#0 TTCAGATAGTTTGTCCCGTGAAATAGTTGAACAAATCCAACTTCGAGTAATGGATATTTA 960 consensus_9597#1 TTCAGATAGTTTGTCCCGTGAAATAGTTGAACAAATCCAACTTCGAGTAATGGATATTTA 194 ************************************************************ consensus_9597#0 TGCAGTGGATGATAAATTCAAAGCCAGTACACTTAATCGTTTCACTGATGAATTTTGAGT 1020 consensus_9597#1 TGCAGTGGATGATAAATTCAAAGCCAGTACACTTAATCGTTTCACTGATGAATTCTGAGT 254 ****************************************************** ***** consensus_9597#0 ACAGTTTGTTGGCGAACAGCTTTGCATTTTTTATACTGTTTTGTCATGTACATTCGAAAT 1080 consensus_9597#1 ACAGTTTGTTGGCGAACAGCTTTGCATTTTTTATACTGTTTTGTCATGTACATTCGAAAT 314 ************************************************************ consensus_9597#0 GTATTGTAAAGAAAATTTAATATTCAAATTTGTTAACACTCGAGTTGTTTTGCATTGTTT 1140 consensus_9597#1 GTATTGTAAAGAAAATCTAATATTCAAATTTGTTAACACTCGAAAAAAAAAAAAAAAAAA 374 **************** ************************** * consensus_9597#0 CTTTCCACATTTTCCGTTTTTCATTTGACGATTTAGAATGATTTTTCGTGATTTTAAACA 1200 consensus_9597#1 AAAAAAAAA--------------------------------------------------- 383 * * consensus_9597#0 TTGATTAATCAATAGTTTACTACTGTTTCCAAAATCCCATTCCTACTACAGACACTCGAT 1260 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 CCTTTGAATATCCCAAAGTATCAATCATGTAGTTCAATGAGATGCATATACATACGTATA 1320 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 TTTGTTACGGTGTTTTTGTATTCCTGCTTTTTACAAACGTCATATAGTTTCTTGTTGTGT 1380 consensus_9597#1 ------------------------------------------------------------ consensus_9597#0 TCATTTTCCAAGAACTACTTTTTGATGTATCCACTGGCGGATGTAAATAAATTAGTTG 1438 consensus_9597#1 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||