These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 880 fasta sequence [TCGGAGGCCATNAATTCGGCACGAGGTGAAATCGATCGAGTTGCACATGAGGCGTGTATTGAACGTGAATGTTATCCTTCTCCACTGAACTATTTCAATTTTCCGAAGTCATGTTGCACATCAGTTAACGAAGTGATCTGTCATGGAATACCGGATATGCGACCTTTACAAAATGGTGATATTTTGAATATTGATATCACCACATACCACAATGGATTTCATGGTGATGTGAATGAGACAGTGTTTGTAGGTCAGCCAGATGATCGTTCAGTTAATCTAGTGAAAAATGCTTACAAATGTTTGGTTAGATCTATGGATGCTGTTTTTCCAGGTGTTAAATATCGTGAAATGGGAGATATAATTTCAAAAAATGCTTCACTTGGTGGATTTTCTGTTGTCAAGACTTATTCAGGTCATGGAATACATCGGTTATTTCATTGTCCTCCAAATATTCTTCACTATTCACGTAATAAGGCAGTCGGTGTCATGAAACCAGGACATTGTTTCACCATTGAACCAATGATAAATCAAGGCGATTGGCGTGATGAATTATGGCCAGACAATTGGACTGCAGTAACTGCGGATGGTTTAAGATCAGCTCAATTCGAACATACTATGGTTATTTTAAAACCAGAATTAGCCGCATCAAATGGAATGCCAATTGAAGTATTAACTAAACGTCATATCAAAGGTAGTGATCCATTAAATGGATGTAAATTCAATAAAGAAGATACTTTACATTTTGAACGTTATGGTAGACCTTATTTTGTAGATCAATTGTACAAATTAGGTTTAAATACTGATTGTACAGTGCTTAAAGATGTATCTAAAAATTGAACAATTTATAAAACTTCNCAAATCTTTAAAAAATCCAACTTCT] [+] EMBL CD081522 [TCGGAGGCCATNAATTCGGCACGAGGTGAAATCGATCGAGTTGCACATGAGGCGTGTATTGAACGTGAATGTTATCCTTCTCCACTGAACTATTTCAATTTTCCGAAGTCATGTTGCACATCAGTTAACGAAGTGATCTGTCATGGAATACCGGATATGCGACCTTTACAAAATGGTGATATTTTGAATATTGATATCACCACATACCACAATGGATTTCATGGTGATGTGAATGAGACAGTGTTTGTAGGTCAGCCAGATGATCGTTCAGTTAATCTAGTGAAAAATGCTTACAAATGTTTGGTTAGATCTATGGATGCTGTTTTTCCAGGTGTTAAATATCGTGAAATGGGAGATATAATTTCAAAAAATGCTTCACTTGGTGGATTTTCTGTTGTCAAGACTTATTCAGGTCATGGAATACATCGGTTATTTCATTGTCCTCCAAATATTCTTCACTATTCACGTAATAAGGCAGTCGGTGTCATGAAACCAGGACATTGTTTCACCATTGAACCAATGATAAATCAAGGCGATTGGCGTGATGAATTATGGCCAGACAATTGGACTGCAGTAACTGCGGATGGTTTAAGATCAGCTCAATTCGAACATACTATGGTTATTTTAAAACCAGAATTAGCCGCATCAAATGGAATGCCAATTGAAGTATTAACTAAACGTCATATCAAAGGTAGTGATCCATTAAATGGATGTAAATTCAATAAAGAAGATACTTTACATTTTGAACGTTATGGTAGACCTTATTTTGTAGATCAATTGTACAAATTAGGTTTAAATACTGATTGTACAGTGCTTAAAGATGTATCTAANAATTGAACAATTTATAAAACTTNNCAAATCTTTAAAAAATCCAACTTC ] [-] EMBL CD159739 [ TCATGTTGCACATCAGTTAACGAAGTGATCTGTCATGGAATACCGGATATGCGACCTTTACAAAATGGTGATATTTTGAATATTGATATCACCACATACCACAATGGATTTCATGGTGATGTGAATGAGACAGTGTTTGTAGGTCAGCCAGATGATCGTTCAGTTAATCTAGTGAAAAATGCTTACAAATGTTTGGTTAGATCTATGGATGCTGTTTTTCCAGGTGTTAAATATCGTGAAATGGGAGATATAATTTCAAAAAATGCTTCACTTGGTGGATTTTCTGTTGTCAAGACTTATTCAGGTCATGGAATACATCGGTTATTTCATTGTCCTCCAAATATTCTTCACTATTCACGTAATAAGGCAGTCGGTGTCATGAAACCAGGACATTGTTTCACCATTGAACCAATGATAAATCAAGGCGATTGGCGTGATGAATTATGGCCAGACAATTGGA ] [-] EMBL CD159727 [ ATCAGTTAACGAAGTGATCTGTCATGGAATACCGGATATGCGACCTTTACAAAATGGTGATATTTTGAATATTGATATCACCACATACCACAATGGATTTCATGGTGATGTGAATGAGACAGTGTTTGTAGGTCAGCCAGATGATCGTTCAGTTAATCTAGTGAAAAATGCTTACAAATGTTTGGTTAGATCTATGGATGCTGTTTTTCCAGGTGTTAAATATCGTGAAATGGGAGATATAATTTCAAAAAATGCTTCACTTGGTGGATTTTCTGTTGTCAAGACTTATTCAGGTCATGGAATACATCGGTTATTTCATTGTCCTCCAAATATTCTTCACTATTCACGTAATAAGGCAGTCGGTGTCATGAAACCAGGACATTGTTTCACCATTGAACCAATGATAAATCAAGGCGATTGGCGTGATGAATTATGGCCAGACAATTGGA ] [-] EMBL CD159762 [ ACCTTTACAAAATGGTGATATTTTGAATATTGATATCACCACATACCACAATGGATTTCATGGTGATGTGAATGAGACAGTGTTTGTAGGTCAGCCAGATGATCGTTCAGTTAATCTAGTGAAAAATGCTTACAAATGTTTGGTTAGATCTATGGATGCTGTTTTTCCAGGTGTTAAATATCGTGAAATGGGAGATATAATTTCAAAAAATGCTTCACTTGGTGGATTTTCTGTTGTCAAGACTTATTCAGGTCATGGAATACATCGATTATTTCATTGTCCTCCAAATATTCTTCACTATTCACGTAATAAGGCAGTCGGTGTCATGAAACCAGGACATTGTTTCACCATTGAACCAATGATAAATCAAGGCGATTGGCGTGATGAATTATGGCCAGACAATTGGA ] [-] EMBL CD076488 [ ACAATGGATTTCATGGTGATGTGAATGAGACAGTGTTTGTAGGTCAGCCAGATGATCGTTCAGTTAATCTAGTGAAAAATGCTTACAAATGTTTGGTTAGATCTATGGATGCTGTTTTTCCAGGTGTTAAATATCGTGAAATGGGAGATATAATTTCAAAAAATGCTTCACTTGGTGGATTTTCTGTTGTCAAGACTTATTCAGGTCATGGAATACATCGGTTATTTCATTGTCCTCCAAATATTCTTCACTATTCACGTAATAAGGCAGTCGGTGTCATGAAACCAGGACATTGTTTCACCATTGAACCAATGATAAATCAAGGCGATTGGCGTGATGAATTATGGCCAGACAATTGGACTGCAGTAACTGCGGATGGTTTAAGATCAGCTCAATTCGAACATACTATGGTTATTTTAAAACCAGAATTAGCCGCATCAAATGGAATGCCAATTGAAGTATTAACTAAACGTCATATCAAAGGTAGTGATCCATTAAATGGATGTAAATTCAATAAAGAAGATACTTTACATTTTGAACGTTATGGTAGACCTTATTTTGTAGATCAATTGTACAAATTAGGTTTAAATACTGATTGTACAGTGCTTAAAGATGTATTTAAAAATTGAACAATTTATAAAACTTC ] [+] EMBL CD191743 [ TTTGTAGGTCAGCCAGATGATCGTTCAGTTAATCTAGTGAAAAATGCTTACAAATGTTTGGTTAGATCTATGGATGCTGTTTTTCCAGGTGTTAAATATCGTGAAATGGGAGATATAATTTCAAAAAATGCTTCACTTGGTGGATTTTCTGTTGTCAAGACTTATTCAGGTCATGGAATACATCGGTTATTTCATTGTCCTCCAAATATTCTTCACTATTCACGTAATAAGGCAGTCGGTGTCATGAAACCAGGACATTGTTTCACCATTGAACCAATGATAAATCAAGGCGATTGGCGTGATGAATTATGGCCAGACAATTGGACTGCAGTAACTGCGGATGGTTTAAGATCAGCTCAATTCGAACATACTATGGTTATTTTAAAACCAGAATTAGCCGCATCAAATGGAATGCCAATTGAA ] [-] EMBL CD075345 [ TGGAATACATCGGTTATTTCATTGTCCTCCAAATATTCTTCACTATTCACGTAATAAGGCAGTCGGTGTCATGAAACCAGGACATTGTTTCACCATTGAACCAATGATAAATCAAGGCGATTGGCGTGATGAATTATGGCCAGACAATTGGACTGCAGTAACTGCGGATGGTTTAAGATCAGCTCAATTCGAACATACTATGGTTATTTTAAAACCAGAATTAGCCGCATCAAATGGAATGCCAATTGAAGTATTAACTAAACGTCATATCAAAGGTAGTGATCCATTAAATGGATGTAAATTCAATAAAGAAGATACTTTACATTTTGAACGTTATGGTAGACCTTATTTTGTAGATCAATTGTACAAATTAGGTTTAAATACTGATTGTACAGTGCTTAAAGATGTATTTAAAAATTGAACAATTTATAAAACTTCCAAAATTTTAAAAAAATCCAACTTCT] [-] EMBL CD076049 [ GTTATTTCATTGTCCTCCAAATATTCTTCACTATTCACGTAATAAGGCAGTCGGTGTCATGAAACCAGGACATTGTTTCACCATTGAACCAATGATAAATCAAGGCGATTGGCGTGATGAATTATGGCCAGACAATTGGACTGCAGTAACTGCGGATGGTTTAAGATCAGCTCAATTCGAACATACTATGGTTATTTTAAAACCAGAATTAGCCGCATCAAATGGAATGCCAATTGAAGTATTAACTAAACGTCATATCAAAGGTAGTGATCCATTAAATGGATGTAAATTCAATAAAGAAGATACTTTACATTTTGAACGTTATGGTAGACCTTATTTTGTAGATCAATTGTACAAATTAGGTTTAAATACTGATTGTACAGTGCTTAAAGATGTATCTAAAAATTGAACAATTTATAAAACTTC ] consensusID : consensus_9601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [AGGCGAACGTGAATGTTATCCTTCTCCACTGAACTATTTCAATTTTCCGAAGTCATGTTGCACATCAGTTAACGAAGTGATCTGTCATGGAATACCGGATATGCGACCTTTACAAAATGGTGATATTTTGAATATTGATATCACCACATACAGCAATGGATTTCTGGGTGATGTGAATGAGACAGTGTTTGTAGGTCAGCCAGATGATCGTTCAGTTAATCTAGTGAAAAATGCTTACAAATGTTTGGTTAGATCTATGGATGCTGTTTTTCCAGGTGTTAAATATCGTGATGTGGNAGATATAATTTCAAAAGATGCTTCACTTGGTGGATTTTCTGNTGTCAAGAAACTTTTCAGGTAAGGGGACACNNTGGTTTTTTTCTTCCCCCCACAAATTTTTTCAATTTANCACTAAAAAGGGCAGGCGGGGGTCATGAAAACCAGGACATTTTTCCACCATTGACCCAATGATAAATCAGGATGGNNCGGAAATAGCAAAATGAAGGAAAAAAAANNNNNNNNANNNNNNNNGCCGGATGGGTTTAGGATCAGCNNNATTTGGAACATACTATTGGTTATTAAANNNNNNNNNNNNNNNNNNNNNNAAATGGAAATGCCAATTGGAAGTTTTAAACCTAAACGTTCTTTTTCCAAAGGGAGGGGATCCCATTATAATGGGGT] [+] EMBL CD082904 [AGGCGAACGTGAATGTTATCCTTCTCCACTGAACTATTTCAATTTTCCGAAGTCATGTTGCACATCAGTTAACGAAGTGATCTGTCATGGAATACCGGATATGCGACCTTTACAAAATGGTGATATTTTGAATATTGATATCACCACATACAGCAATGGATTTCTGGGTGATGTGAATGAGACAGTGTTTGTAGGTCAGCCAGATGATCGTTCAGTTAATCTAGTGAAAAATGCTTACAAATGTTTGGTTAGATCTATGGATGCTGTTTTTCCAGGTGTTAAATATCGTGATGTGGNAGATATAATTTCAAAAGATGCTTCACTTGGTGGATTTTCTGNTGTCAAGAAACTTTTCAGGTAAGGGGACACNNTGGTTTTTTTCTTCCCCCCACAAATTTTTTCAATTTANCACTAAAAAGGGCAGGCGGGGGTCATGAAAACCAGGACATTTTTCCACCATTGACCCAATGATAAATCAGGATGGNNCGGAAATAGCAAAATGAAGGAAAAAAAANNNNNNNNANNNNNNNNGCCGGATGGGTTTAGGATCAGCNNNATTTGGAACATACTATTGGTTATTAAANNNNNNNNNNNNNNNNNNNNNNAAATGGAAATGCCAATTGGAAGTTTTAAACCTAAACGTTCTTTTTCCAAAGGGAGGGGATCCCATTATAATGGGGT] consensusID : consensus_9601#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [CTCGAGGCCAGAATTCGGCACGAGGGGTTATTTCATTGTCCTCCAAATATTCTTCACTATTCACGTAATAAGGCAGTCGGTGTCATGAAACCAGGACATTGTTTCACCATTGAACCAATGATAAATCAAGGCGATTGGCGTGATGAATTATGGCCAGACAATTGGACTGCAGTAACTGCGGATGGTTTAAGATCAGCTCAATTCGAACATACTATGGTTATTTTAAAACCAGAATTAGCCGCATCAAATGGAATGCCAATTGAAGTATTAACTAAACGTCATATCAAAGGTAGTGATCCATTAAATGGATGTAAATTCAATAAAGAAGATACTTTACATTTTGAACGTTATGGTAGACCTTATTTTGTAGATCAATTGTACAAATTAGGTTTAAATACTGATTGTACAGTGCTTAAAGATGTATCTAAAAATTGAACAATTTATAAAACTT] [+] EMBL CD082451 [CTCGAGGCCAGAATTCGGCACGAGGGGTTATTTCATTGTCCTCCAAATATTCTTCACTATTCACGTAATAAGGCAGTCGGTGTCATGAAACCAGGACATTGTTTCACCATTGAACCAATGATAAATCAAGGCGATTGGCGTGATGAATTATGGCCAGACAATTGGACTGCAGTAACTGCGGATGGTTTAAGATCAGCTCAATTCGAACATACTATGGTTATTTTAAAACCAGAATTAGCCGCATCAAATGGAATGCCAATTGAAGTATTAACTAAACGTCATATCAAAGGTAGTGATCCATTAAATGGATGTAAATTCAATAAAGAAGATACTTTACATTTTGAACGTTATGGTAGACCTTATTTTGTAGATCAATTGTACAAATTAGGTTTAAATACTGATTGTACAGTGCTTAAAGATGTATCTAAAAATTGAACAATTTATAAAACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9601#0 TCGGAGGCCATNAATTCGGCACGAGGTGAAATCGATCGAGTTGCACATGAGGCGTGTATT 60 consensus_9601#2 ------------------------------------------------------------ consensus_9601#1 ------------------------------------------------------------ consensus_9601#0 GAACGTGAATGTTATCCTTCTCCACTGAACTATTTCAATTTTCCGAAGTCATGTTGCACA 120 consensus_9601#2 ------------------------------------------------------------ consensus_9601#1 ------------------------------------------------------------ consensus_9601#0 TCAGTTAACGAAGTGATCTGTCATGGAATACCGGATATGCGACCTTTACAAAATGGTGAT 180 consensus_9601#2 ------------------------------------------------------------ consensus_9601#1 ------------------------------------------------------------ consensus_9601#0 ATTTTGAATATTGATATCACCACATACCACAATGGATTTCATGGTGATGTGAATGAGACA 240 consensus_9601#2 ------------------------------------------------------------ consensus_9601#1 -----------------------------------------AGGCGAACGTGAATGTTAT 19 consensus_9601#0 GTGTTTGTAGGTCAGCCAGATGATCGTTCAGTTAATCTAGTGAAAAATGCTTACAAATGT 300 consensus_9601#2 ------------------------------------------------------------ consensus_9601#1 CCTTCTCCACTGAACTATTTCAATTTTCCGAAGTCATGTTGCACATCAGTTAACGAAGTG 79 consensus_9601#0 TTGGTTAGATCTATGGATGCTGTTTTTCCAGGTGTTAAATATCGTGAAATGGGAGATATA 360 consensus_9601#2 ------------------------------------------------------------ consensus_9601#1 ATCTGTCATGGAATACCGGATATGCGACCTTTACAAAATGGTGATATTTTGAATATTGAT 139 consensus_9601#0 ATTTCAAAAAATGCTTCACTTGGTGGATTTTCTGTTGTCAAGACTTATTCAG-GTCATGG 419 consensus_9601#2 ------------------------------------CTCGAGGC-----CAG-AATTCGG 18 consensus_9601#1 ATCACCACATACAGCAATGGATTTCTGGGTGATGTGAATGAGACAGTGTTTGTAGGTCAG 199 ** * * * consensus_9601#0 AATACATCGGTTATTTCATTGTCCTC-CAAATATTCTTCACTATTCACGTAATAAGGCAG 478 consensus_9601#2 CACG-AGGGGTTATTTCATTGTCCTC-CAAATATTCTTCACTATTCACGTAATAAGGCAG 76 consensus_9601#1 CCAG--ATGATCGTTCAGTTAATCTAGTGAAAAATGCTTACAAATGTTTGGTTAGATCTA 257 * * ** ** ** ** * * * ** * * ** * consensus_9601#0 TCGGTGTCATGAAACCAGGACATTGTTTCACCATTGAACCAATGATAAATC---AAGGCG 535 consensus_9601#2 TCGGTGTCATGAAACCAGGACATTGTTTCACCATTGAACCAATGATAAATC---AAGGCG 133 consensus_9601#1 TGGATGCTGTTTTTCCAGGTGTTAAATATCGTGATGTGGNAGATATAATTTCAAAAGATG 317 * * ** * ***** * * ** * **** * *** * consensus_9601#0 ATTGGCGTGATGAATTATGGCCAGACAATTGGACTGCAGTAACTGCGGATGGTTTAAGAT 595 consensus_9601#2 ATTGGCGTGATGAATTATGGCCAGACAATTGGACTGCAGTAACTGCGGATGGTTTAAGAT 193 consensus_9601#1 CTTCACTTGGTGGATTTTCTGNTGTCAAGAAACTTTTCAGGTAAGGGGACACNNTGGTTT 377 ** * ** ** *** * * *** * * *** * * consensus_9601#0 CAGCTCAATTCGAACATACTATGGTTATTTTAAAACCAGAATTAGCCGCATCAAATGGAA 655 consensus_9601#2 CAGCTCAATTCGAACATACTATGGTTATTTTAAAACCAGAATTAGCCGCATCAAATGGAA 253 consensus_9601#1 TTTTCTTCCCCCCACAAATTTTT-TCAATTTANCACTAAAAAGGGCAGG--CGGGGGTCA 434 * *** * * * * * **** ** * ** ** * * * * consensus_9601#0 TGCCAATTGAAGTATTAACTAAACGTCATATCAAAGGTAGTGATCCATTAAATGGATGTA 715 consensus_9601#2 TGCCAATTGAAGTATTAACTAAACGTCATATCAAAGGTAGTGATCCATTAAATGGATGTA 313 consensus_9601#1 TGAAAACCAGGACATTTTTCCACCATTGACCCAATGATAAATCAGGATGGNNCGGAAATA 494 ** ** *** * * * *** * ** ** *** ** consensus_9601#0 ----AATTCAATAAAGAAGATACTTTACATTTTGAACGTTATGGTAGACCTTATTTTGTA 771 consensus_9601#2 ----AATTCAATAAAGAAGATACTTTACATTTTGAACGTTATGGTAGACCTTATTTTGTA 369 consensus_9601#1 GCAAAATGAAGGAAAAAAAANNNNNNNNANNNNNNNNGCCG-GATGGGTTTAGGATCAGC 553 *** * *** ** * * * * * * * * consensus_9601#0 GATCAATTGTACAAATTAG-----GTTTAAATACTGATTGTACAGTGCTTAAAGATGTAT 826 consensus_9601#2 GATCAATTGTACAAATTAG-----GTTTAAATACTGATTGTACAGTGCTTAAAGATGTAT 424 consensus_9601#1 NNNATTTGGAACATACTATTGGTTATTAAANNNNNNNNNNNNNNNNNNNNNNAAATGGAA 613 * * *** * ** ** ** * *** * consensus_9601#0 CTAAAAATTGAACAATTTATA---AAACTTCNCAAATCTTTAAAAAATCCAACTTCT--- 880 consensus_9601#2 CTAAAAATTGAACAATTTATA---AAACTT------------------------------ 451 consensus_9601#1 ATGCCAATTGGAAGTTTTAAACCTAAACGTTCTTTTTCCAAAGGGAGGGGATCCCATTAT 673 * ***** * **** * **** * consensus_9601#0 -------- consensus_9601#2 -------- consensus_9601#1 AATGGGGT 681 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||