These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1675 fasta sequence [TTTCCTGGTGGTAAAGCAAAATGTCCGGATAGTTCAACATGTTGTAAATTATCTAGTGGGAAATATGCATGTTGTCCAATACCAAATGCTATTTGTTGTGCGGATGATATTCATTGTTGTCCACCAGGAACTTCATGTGACTACAAAACTCTATCATGTGTGAAAGCGAACAATGATCATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTACTGGAGTACGTGATCATGTTTGC-CCTGGTCATCAATCTACATGTTCTGATGATCAAACTTGTTGTCGACTGCCTGATAAATCATGGGGTTGTTGTCCACTGAAAAATGGTGTTTGTTGCGGTGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGATTTGGATACAAAACAATGCATTTTACAACTTGAATTAAATCAATCTACCACAAAAATAGTTTATGATGGGTTTACTATGCACATAGCTAATCGAAAGTCATCAGATCGTTTATATTCACAACCAGTAAAATCAATTAGTACTATTGATGCTTCTGTACAAGCGAAATGGTGTGGAGCATGTGGTGACACTTGGGCTTGTTGTCCAGATGCTACTTTCAATTCATGGTCATGTTGTCCTTATGTAGGCGGAGAATGTTGTATTGGACAAAATATTTGTTGTCCTCCTGGATCACGTTGTTTAAATAATGGTAAATGTG-AAAAAATTTCAAAGAATATCATGAAATCATTTGCACCAACTTTAATACCATCTATTTCAAAGAATAACAATTTACAAAAATCATATTTCATTCAACAAAATAATGTAAAAGAAAACTTCCATATAGAAATGTCTAATATTGCTAAACCTGCTCAAAGGAATATTCTTCTTCTTGTTCGTCATTATCGACGTCTTAAACGACAATTACATACAATTTGTCCTGATTCATTACATTATTGTGGTAAATCTGGACAATGCTGTCTTTCTAATAAATTTGGTTATACTTGTACACCGAATAAGTCCATATGTTGTGGATCTAATATGGATACTTATTGTCCAATATACAAAGATTGTTCTTTAGATGGTAAATTCTGTATTGATAAGTATTAGTTTCACTGTTATCATAACTATTGATAGTTGGATAATTAATATATAATGGTTAATTCATCATTCACTATTATTATCATTATGTGTGTTGTGTGTGTGTGTGTTTATGAATTACTACACATCTTGCCATTATTATCAATTCGGATTAGTAACCTCTCGTATCCATGTTACTTCTTT-TCCTTGTTGTTGTTGTTGATGATGATGATGATTCGATTCAATA-TTTTCTATTTTGTTCATGTTATGTTTCCATTTGTTTATCGAAATAATTTTCCTCGGATACTACTTATATTGAGTGTTACTTTTCTTTTTGTTTTACCAATTGGTTTGTAATTGGTTTTTAATCGTCATGGTAACAAAAAATTTAATGAATAAATGAATGAAGTTGATTTCCTATATTCAATTGACTAGTCCCGGTTAGAATAAAATATCCATCCTAATAAATTCATAACTAATTATAATTCCTTTAATTTATTATTCTTGATTCTATTTTACACGTTAATGTTTTCTTCATTGAATAATTAACAACATTTCATAGATTATCAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAG] [+] EMBL CD127709 [TTTCCTGGTGGTAAAGCAAAATGTCCGGATAGTTCAACATGTTGTAAATTATCTAGTGGGAAATATGCATGTTGTCCAATACCAAATGCTATTTGTTGTGCGGATGATATTCATTGTTGTCCACCAGGAACTTCATGTGACTACAAAACTCTATCATGTGTGAAAGCGAACAATGATCATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTACTGGAGTACGTGATCATGTTTGC CCTGGTCATCAATCTACATGTTCTGATGATCAAACTTGTTGTCGACTGCCTGATAAATCATGGGGTTGTTGTCCACTGAAAAATGGTGTTTGTTGCGGTGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGATTTGGATACAAAACAATGCATTTTACAACTTG ] [+] EMBL CD168286 [ GACTACAAAACTCTATCATGTGTGAAAGCGAACAATGATCATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTACTGGAGTACGTGATCATGTTTGC CCTGGTCATCAATCTACATGTTCTGATGATCAAACTTGTTGTCGACTGCCTGATAAATCATGGGGTTGTTGTCCACTGAAAAATGGTGTTTGTTGCGGCGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGATTTGGATACAAAACAATGCATTTTACAACTTGAATTAAATCAATCTACCACAAAAATAGTTTATGATGGGTTTACTATGCACATAGCTAATCGAAAGTCATCAGATCGTTTATATCCACAACCAGTAAAATCAATTAGTACTATTGATGCTTCTGTACAAGCGAAATGGTGTGGAGCATGTGGTGACACTTGGGCTTGTTGTCCAGATGCTACTTTCAATTCATGGTCATGTTGTCCTTATGTAGGCGGAGAATGTT ] [-] EMBL CD129425 [ TTGCNNCTGGTCATCAATCTACATGTTCTGATGATCAAACTTGTTGTCGACTGCCTGATAAATCATGGGGTTGTTGTCCACTGAAAAATGGTGTTTGTTGCGGTGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGATTTGGATACAAAACAATGCATTTTACAACTTGAATTAAATCAATCTACCACAAAAATAGTTTATGATGGGTTTACTATGCACATAGCTAATCGAAAGTCATCAGATCGTTTATATTCACAACCAGTAAAATCAATTAGTACTATTGATGCTTCTGTACAAGCGAAATGGTGTGGAGCATGTGGTGACACTTGGGCTTGTTGTCCAGATGCTACTTTCAATTCATGGTCATGTTGTCCTTATGTAGGCGGAGAATGTTGTATTGGACAAAATATTTGTTGTCCTCCTGGATCACGTTGTTTAAATAATGGTAAATGTG AAAAAATTTCAAAGAATATCATGAAATCATTTGCACCAACTTTAATACCATCTATTTCAAAGAATAACAATTTACAAAAATCATATTTCATTCAACAAAATAATGTAAAAGAAAACTTCCATATAGAAATGTCTAATATTGCTAAACCTGCTCAAAGGAATATTCTTCTTCTTGTTCGTCATTATCGACGTCTTAAACGACAATTACA ] [-] EMBL CD119050 [ GTTTGTGATTTGGATACAAGACAATGCATTTTACAACTTGAATTAAATCAATCTACCACAAAAATAGTTTATGATGGGTTTACTATGCACATAGCTAATCGAAAGTCATCAGATCGTTTATATTCACAACCAGTAAAATCAATTAGTACTATTGATGCTTCTGTACAAGCGAAATGGTGTGGAGCATGTGGTGACACTTGGGCTTGTTGTCCAGATGCTACTTTCAATTCATGGTCATGTTGTCCTTATGTAGGCGGAGAATGTTGTATTGGACAAAATATTTGTTGTCCTCCTGGATCACGTTGTTTAAATAATGGTAATTGTGAAAAAAATTTCAAAGAATATCATGAAATCATTTGCACCAACTTTAATACCATCTATTTCAAAGAATAACAATTTACAAAAATCATATTTCATTCAACAAAATAATGTAAAAGAAAACTT ] [+] EMBL CD077707 [ CGTTTATATTCACAACCAGTAAAATCAATTAGTACTATTGATGCTTCTGTACAAGCGAAATGGTGTGGAGCATGTGGTGACACTTGGGCTTGTTGTCCAGATGCTACTTTCAATTCATGGTCATGTTGTCCTTATGTAGGCGGAGAATGTTGTATTGGACAAAATATTTGTTGTCCTCCTGGATCACGTTG ] [+] EMBL CD080251 [ GTTGTCCAGATGCTACTTTCAATTCATGGTCATGTTGTCCTTATGTAGGCGGAGAATGTTGTATTGGACAAAATATTTGTTGTCCTCCTGGATCACGTTGTTTAAATAATGGTAAATGTG AAAAAATTTCAAAGAATATCATGAAATCATTTGCACCAACTTTAATACCATCTATTTCAAAGAATAACAATTTACAAAAATCATATTTCATTCAACAAAATAATGTAAAAGAAAACTTCCATATAGAAATGTCTAATATTGCTAAACCTGCTCAAAGGAATATTCTTCTTCTTGTTCGTCATTATCGACGTCTTAAACGACAATTACATACAATTTGTCCTGATTCATTACATTATTGTGGTAAATCTGGACAATGCTGTCTTTCTAATAAATTTGGTTATACTTGTACACCGAATAAGTCCATATGTTGTGGATCTAATATGGATACTTATTGTCCAATATACAAAGATTGTTCTTTAGATGGTAAATTCTGTATTGATAAGTATTAGTTTCACTGTTATCATAACTATTGATAGTTGGATAATTAATATATAATGGTTAATTCATCATTCACTATTATTATCATTATGTGTGTTGTGTGTGTGTGTGTTTATGAATTACTACACATCTTGCCATTATTATCAATTCGGATTAGTAACCTCTCGTATCCATGTTACTTCTTT TCCTTGTTGTTGTTGTTGATGATGATGATGATTCGATTCAATA TTTTCTATTTTGTTCATGTTATGTTTCCATTTGTTTATCGAAATAATTTTCCTCG ] [-] EMBL AI067837 [ ATTATTATCAATTCGGATTAGTAACCTCTCGTATCCATGTTACTTCTTTCTCCTTGTTGTTGTTGTTGATGATGATGATGATTCGATTCAATATTTTTGTATTTTGTTCATGTTATGTTTCCATTTGTTTATCG AATAAATTTCCTTCGATACTACTTATATTGAGTGTTACTTTTCTTTTTGTTTTACCAATTGGTTTGTAATTGGTTTTTAATCGTCATGGTAACAAAAAATTTAATGAATAAATGAATGAAGTTGATTTCCTATATTCAATTGACTAGTCCCGGTTAGAATAAAATATCCATCCTAATAAATTCATAACTAATTATAATTCCTTTAATTTATTATTCTTGATTCTATTTTACACGTTAATGTTTTCTTCATTGAATAATTAACAACATTTCATAGATTATCAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAG] consensusID : consensus_9605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 304 fasta sequence [TGCCTTCACACATGATATTCATTGTTGTCCACCAGGAACTTCATGTGACTACAAAACTCTATCATGTGTGAAAGCGAACAATGATCATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTACTGGAGTACGTGATCATGTTTGCCCTGGTCATCAATCTACATGTTCTGATGATCAAACTTGTTGTCGACTGCCTGATAAATCATGGGGTTGTTGTCCACTGAAAAATGGTGTTTGTTGCGGTGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGAT] [+] EMBL CD169906 [TGCCTTCACACATGATATTCATTGTTGTCCACCAGGAACTTCATGTGACTACAAAACTCTATCATGTGTGAAAGCGAACAATGATCATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTACTGGAGTACGTGATCATGTTTGCCCTGGTCATCAATCTACATGTTCTGATGATCAAACTTGTTGTCGACTGCCTGATAAATCATGGGGTTGTTGTCCACTGAAAAATGGTGTTTGTTGCGGTGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGAT] [+] EMBL CD181145 [ GTGACTACAAAACTCTATCATGTGTGAAAGCGAACAATGATCATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTACTGGAGTACGTGATCATGTTTGCCCTGGTCATCAATCTACATGTTCTGATGATCAAACTTGTTGTCGACTGCCTGATAAATCATGGGGTTGTTGTCCACTGAAAAATGGTGTTTGTTGCGGTGATCATTTTCAC ] consensusID : consensus_9605#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [CTAATCATTGAAAAAAATTAGCTGGTATTGTCCTAGTCCGAGATTATCTACAAAATGAATAGATTTCATACATTCTCTATAGCTTTTTTACAGTTTACTTAGGATCTTATTACAATAACTCATGTCGGTACTTGGATTATACTAAAATTGCAATATTTCTAATTCACCCTCCAAATTCTTAATAAATACATATCAGTGTTCGTCATTATCGACGTCTTAAACGACAATTACATACAATTTGTCCTGATTCATTACATTATTGTGGTAAATCTGAACAATGCTGTCTTTCTAATAAATTTGGTT] [-] EMBL CD194351 [CTAATCATTGAAAAAAATTAGCTGGTATTGTCCTAGTCCGAGATTATCTACAAAATGAATAGATTTCATACATTCTCTATAGCTTTTTTACAGTTTACTTAGGATCTTATTACAATAACTCATGTCGGTACTTGGATTATACTAAAATTGCAATATTTCTAATTCACCCTCCAAATTCTTAATAAATACATATCAGTGTTCGTCATTATCGACGTCTTAAACGACAATTACATACAATTTGTCCTGATTCATTACATTATTGTGGTAAATCTGAACAATGCTGTCTTTCTAATAAATTTGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9605#0 TTTCCTGGTGGTAAAGCAAAATGTCCGGATAGTTCAACATGTTGTAAATTATCTAGTGGG 60 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 AAATATGCATGTTGTCCAATACCAAATGCTATTTGTTGTGCGGATGATATTCATTGTTGT 120 consensus_9605#1 --------------------------------TGCCTTCACACATGATATTCATTGTTGT 28 consensus_9605#2 -----------------------------CTAATCATTGAAAAAAATTAGCTGGTATTGT 31 * * ** * **** consensus_9605#0 CCA---CCAGGAACTTCATGTGACTACAAAACTCTATCATGTGTGAAAGCGAACAATGAT 177 consensus_9605#1 CCA---CCAGGAACTTCATGTGACTACAAAACTCTATCATGTGTGAAAGCGAACAATGAT 85 consensus_9605#2 CCTAGTCCGAGATTATCTACAAAATGAATAGATTTCATACATTCTCTATAGCTTTTTTAC 91 ** ** ** ** * * * * * * * * * * * * consensus_9605#0 CATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTA-C 236 consensus_9605#1 CATTCAATTGGAAGCCCATCAGCTAATGAATTATTGCGTAATCCTAAGTTGTTATTTA-C 144 consensus_9605#2 AGTTTACTTAGGATCTTATTA--CAATAACTCATGTCGGTA-CTTGGATTATACTAAAAT 148 ** * ** * * * ** * *** * * ** ** * * * ** * * * consensus_9605#0 TGGAGTACGTGATCATGTTTGCCCTGGTCATCAATCTACATGTTCTGATGATCAAACTTG 296 consensus_9605#1 TGGAGTACGTGATCATGTTTGCCCTGGTCATCAATCTACATGTTCTGATGATCAAACTTG 204 consensus_9605#2 TGCAATATTTCTAATTCACCCTCCAAATTCTTAATAAATACATATCAGTGTTCG---TCA 205 ** * ** * * ** * * *** * * * ** ** * consensus_9605#0 TTGTCGACTGCCTGATAAATCATGGGGT-TGTTGTCCACTGAAAAATGGTGTTTGTTGCG 355 consensus_9605#1 TTGTCGACTGCCTGATAAATCATGGGGT-TGTTGTCCACTGAAAAATGGTGTTTGTTGCG 263 consensus_9605#2 TTATCGACGTCTTAAACGACAATTACATACAATTTGTCCTGATTCATTACATT-ATTGTG 264 ** ***** * * * * ** * * * **** ** ** *** * consensus_9605#0 GTGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGATTTGGATACAAAACAATGCA 415 consensus_9605#1 GTGATCATTTTCACTGTTGTCCAGCTGGTTCAGTTTGTGAT------------------- 304 consensus_9605#2 GTAAATCTGAACAATGCTGTCTTTCTAATAAATTTGGTT--------------------- 303 ** * * ** ** **** ** * * ** ** consensus_9605#0 TTTTACAACTTGAATTAAATCAATCTACCACAAAAATAGTTTATGATGGGTTTACTATGC 475 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 ACATAGCTAATCGAAAGTCATCAGATCGTTTATATTCACAACCAGTAAAATCAATTAGTA 535 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 CTATTGATGCTTCTGTACAAGCGAAATGGTGTGGAGCATGTGGTGACACTTGGGCTTGTT 595 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 GTCCAGATGCTACTTTCAATTCATGGTCATGTTGTCCTTATGTAGGCGGAGAATGTTGTA 655 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 TTGGACAAAATATTTGTTGTCCTCCTGGATCACGTTGTTTAAATAATGGTAAATGTGAAA 715 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 AAATTTCAAAGAATATCATGAAATCATTTGCACCAACTTTAATACCATCTATTTCAAAGA 775 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 ATAACAATTTACAAAAATCATATTTCATTCAACAAAATAATGTAAAAGAAAACTTCCATA 835 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 TAGAAATGTCTAATATTGCTAAACCTGCTCAAAGGAATATTCTTCTTCTTGTTCGTCATT 895 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 ATCGACGTCTTAAACGACAATTACATACAATTTGTCCTGATTCATTACATTATTGTGGTA 955 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 AATCTGGACAATGCTGTCTTTCTAATAAATTTGGTTATACTTGTACACCGAATAAGTCCA 1015 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 TATGTTGTGGATCTAATATGGATACTTATTGTCCAATATACAAAGATTGTTCTTTAGATG 1075 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 GTAAATTCTGTATTGATAAGTATTAGTTTCACTGTTATCATAACTATTGATAGTTGGATA 1135 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 ATTAATATATAATGGTTAATTCATCATTCACTATTATTATCATTATGTGTGTTGTGTGTG 1195 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 TGTGTGTTTATGAATTACTACACATCTTGCCATTATTATCAATTCGGATTAGTAACCTCT 1255 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 CGTATCCATGTTACTTCTTTTCCTTGTTGTTGTTGTTGATGATGATGATGATTCGATTCA 1315 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 ATATTTTCTATTTTGTTCATGTTATGTTTCCATTTGTTTATCGAAATAATTTTCCTCGGA 1375 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 TACTACTTATATTGAGTGTTACTTTTCTTTTTGTTTTACCAATTGGTTTGTAATTGGTTT 1435 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 TTAATCGTCATGGTAACAAAAAATTTAATGAATAAATGAATGAAGTTGATTTCCTATATT 1495 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 CAATTGACTAGTCCCGGTTAGAATAAAATATCCATCCTAATAAATTCATAACTAATTATA 1555 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 ATTCCTTTAATTTATTATTCTTGATTCTATTTTACACGTTAATGTTTTCTTCATTGAATA 1615 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ consensus_9605#0 ATTAACAACATTTCATAGATTATCAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAG 1675 consensus_9605#1 ------------------------------------------------------------ consensus_9605#2 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||