These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 822 fasta sequence [AGAACTAGGTGTTTTTTTATTTTTATCTATACATATACCTCCAAGTTTATTCATATGCACTTCTCTCGCACTGTGTGTGTGCCACTGTGTGTTTATGCGAATCTTCTTTGACCGAGTTTTTTTCTTTACTTGTTTATTAATCTCTGGAATGTATTGAAGGTCAACTAACCACGCATGTCTTCAATTTCACACCTCACACTGCTACCTTGTATACACCACTCTTTTCTCGTAAAGTAGTGTGGATTAATCAATCATCATTGTTATCATTATTATTATTATACATATGTGTGATTTATGACTAGTTTTCTACGAGGAATGTTTTAGTGTTATTTTCTTCTTTCTTCCTCTTCTCCCACCTCCTCGTACTCTTTTCTTTACATTAACGATGTAGTTTACAGAGTATTTTCTACTTTATTGTTTTGTTTCGAACATGTGTTGGTGAAAAATGAAGAAATGTTTCCCCTTATTGTCTTTATACTTCACACACACACATAGAGCCTTATGATGAATACCAGTAACAAAATATGTACAGTCGCATTCATTATTACTACTGCTATACTACCTATACAGCAATCTAGTTGGGAGTAAGCCACTGAATTTTTTTACAACTTTGGTGTTTTTTGATAGTCATTCTTTACAAAAAACTCGATGTCGATCATGTGTAACAGTGTTCTCTCTCTGTGTACGTGTGTATTTTACTCATAATTCTCATTGNTGNTNTTGNTGNTATTGCCTTTGTCATAAGCTCTTTCTTAAAGAATTTTTTTTGTGAAATTCCTTGTACAGTTATCANTANTANTANTANTANTANTANTANTANTG] [+] EMBL CD082896 [AGAACTAGGTGTTTTTTTATTTTTATCTATACATATACCTCCAAGTTTATTCATATGCACTTCTCTCGCACTGTGTGTGTGCCACTGTGTGTTTATGCGAATCTTCTTTGACCGAGTTTTTTTCTTTACTTGTTTATTAATCTCTGGAATGTATTGAAGGTCAACTAACCACGCATGTCTTCAATTTCACACCTCACACTGCTACCTTGTATACACCACTCTTTTCTCGTAAAGTAGTGTGGATTAATCAATCATCATTGTTATCATTATTATTATTATACATATGTGTGATTTATGACTAGTTTTCTACGAGGAATGTTTTAGTGTTATTTTCTTCTTTCTTCCTCTTCTCCCACCTCCTCGTACTCTTTTCTTTACATTAACGATGTAGTTTACAGAGTATTTTCTACTTTATTGTTTTGTTTCGAACATGTGTTGGTGAAAAATGAAGAAATGTTTCCCCTTATTGTC ] [+] EMBL CD078820 [ GGAATGTATTGAAGGTCAACTAACCACGCATGTCTTCAATTTCACACCTCACACTGCTACCTTGTATACACCACTCTTTTCTCGTAAAGTAGTGTGGATTAATCAATCATCATTGTTATCATTATTATTATTATACATATGTGTGATTTATGACTAGTTTTCTACGAGGAATGTTTTAGTGTTATTTTCTTCTTTCTTCCTCTTCTCCCACCTCCTCGTACTCTTTTCTTTACATTAACGATGTAGTTTACAGAGTATTTTCTACTTTATTGTTTTGTTTCGAACATGTGTTGGTGAAAAATGAAGAAATGTTTCCCCTTATTGTCTTTATACTTCACACACACACATAGAGCCTTATGATGAATACCAGTAACAAAATATGTACAGTCGCATTCATTATTACTACTGCTATACTACCTATACAGCAATCTAGTTGGGAGTAAGCCACTGAATTTTTTTACAACTTTGGTGTTTTTTGATAGTCATTCTTTACAAAAAACTCGATGTCGATCATGTGTAACAGTGTTCTCTCTCTGTGTACGTGTGTATTTTACTCATAATTCTCATTGNTGNTNTTGNTGNTATTGCCTTTGTCATAAGCTCTTTCTTAAAGAATTTTTTTTGTGAAATTCCTTGTACAGTTATCANTANTANTANTANTANTANTANTANTANTG] [-] EMBL CD073280 [ TTTTTCCTCTTCTCCCACCTCCTCGTACTCTTTTCTTTACATTAACGATGTAGTTTACAGAGTATTTTCTACTTTATTGTTTTGTTTCGAACATGTGTTGGTGAAAAATGAAGAAATGTTTCCCCTTATTGTCTTTATACTTCACACACACACATAGAGCCTTATGATGAATACCAGTAACAAAATATGTACAGTCGCATTCATTATTACTACTGCTATACTACCTATACAGCAATTTAGTTGGGAGTAAGCCACTGAATTTTTTTACAACTTTGGTGTTTTTTGATAGTCATTCTTTACAAAAAACTCGATGTCGATCATGTGTAACAGTGTTCTCTCTCTGTGTACGTGTGTATTTTACTCATAATTCTCATTGTTGTTTTTGTTGTTATTGCCTTTGTCATAAGCTCTTTCTTAAAGAATTTTTTTTGTGAAATTCCTTGTACAGTTATCAATAATAATAATAATAATAATAATAATAATG] consensusID : consensus_9625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 751 fasta sequence [TGTAGTTTCCAGAGTATTTTCTACTTTATTGTTTTGTTTCGAACATGTGTTGGTGAAAAATAAAGAAATGTTTCCCCTTATTGTCTTTATACTTCCCCCCCCCCCATAGACCCTTATGATGAATCCCAGTACCAAAATATGTCCAGTCGCATTCATTATTACTACTGCTATACTCCCTATCCACCAATTTAGTTGGGAGTAACCCCCTGAATTTTTTTTCCAACTTTGGTGTTTTTTGATAGTCATTCTTTCCAAAAAACTCGATGTCGATCATGTGTAACAGTGTTCTCTCTCTGTGTACGTGTGTATTTTACTCATAATTCTCATTGTTGTTTTTGTTGTTATTGCCTTTGTCATAAGCTCTTTCTTAAAGAA-TTTTTTTTGTGAAATTCCTTGTACAGTTATCAATAATAATAATAATAATAATAATAATAATGGTAAAAGCCAACAATGATTGCTACTACTTACAATTTCGTTACACGTTACATGATCTGATGTCTGAAAAATCAAAGCGACCTATGAAAATATGAAGGGCAAGTTTGGGATTCATTTTTCTCAGCATACTTATAGGTGTTGCAAACATGCTGTTTGTTTTTATGCACACACCACAGTTTTTTTCTGTCCGTCTACGCTTACATATAATAATGATGATTATCTAGTCACACTATAAATAGCAATCAATAAAAAAGTACCCTGTGTTCCTCTGCTTATCAATCAGTGTAATCATTACTTCGAGTCGATTAGATGTGAT] [-] EMBL CD076480 [TGTAGTTTCCAGAGTATTTTCTACTTTATTGTTTTGTTTCGAACATGTGTTGGTGAAAAATAAAGAAATGTTTCCCCTTATTGTCTTTATACTTCCCCCCCCCCCATAGACCCTTATGATGAATCCCAGTACCAAAATATGTCCAGTCGCATTCATTATTACTACTGCTATACTCCCTATCCACCAATTTAGTTGGGAGTAACCCCCTGAATTTTTTTTCCAACTTTGGTGTTTTTTGATAGTCATTCTTTCCAAAAAACTCGATGTCGATCATGTGTACCAGTGTTCTCTCTCTGGGTACGGGGGTATTTTACTCATAATTCTCATTGTTGTTTTTGTTGTTATTCCCTTTGTCATAAGCTCTTTTTTAAAGAATTTTTTTTTGTGAAATTCCTTGTCCAGTTATCAATAATAATAATAATAATAATAATg ] [+] EMBL AA559544 [ agTTTTTTTTACAACTTTGGTGTTTTTTGATAGTCATNCTTTACAAAAAACTCGATGTCGATCATGTGTAACAGTGTCCTCTCTCTGTGTACGTGTGTATTTNACTCATAATNCTCATTGTTGTTTTTGTTGTTATTGCCTTTGTCATAAGCTCTTTCTTAAANAA TTTTTTTNGTGAAATNCCTTGTACAGTTATCAATAATAATAATAATAATAAT ] [-] EMBL CD147110 [ TGTCGATCATGTGTAACAGTGTTCTCTCTCTGTGTACGTGTGTATTTTACTCATAATTCTCATTGTTGTTTTTGTTGTTATTGCCTTTGTCATAAGCTCTTTCTTAAAGAA TTTTTTTTGTGAAATTCCTTGTACAGTTATCAATAATAATAATAATAATAATAATAATAATGGTAAAAGCCAACAATGATTGCTACTACTTACAATTTCGTTACACGTTACATGATCTGATGTCTGAAAAATCAAAGCGACCTATGAAAATATGAAGGGCAAGTTTGGGATTCATTTTTCTCAGCATACTTATAGGTGTTGCAAACATGCTGTTTGTTTTTATGCACACACCACAGTTTTTTTCTGTCCGTCTACGCTTACATATAATAATGATGATTATCTAGTCACACTATAAATAGCAATCAATAAAAAAGTACCCTGTGTTCCTCTGCTTATCAATCAGTGTAATCATTACTTCGAGTCGATTAGATGTGAT] [-] EMBL CD147051 [ TGTAACAGTGTTCTCTCTCTGTGTACGTGTGTATTTTACTCATAATTCTCATTGTTGTTTTTGTTGTTATTGCCTTTGTCATAAGCTCTTTCTTAAAGAA TTTTTTTTGTGAAATTCCTTGTACAGTTATCAATAATAATAATAATAATAATAATAATAATGGTAAAAGCCAACAATGATTGCTACTACTTACAATTTCGTTACACGTTACATGATCTGATGTCTGAAAAATCAAAGCGACCTATGAAAATATGAAGGGCAAGTTTGGGATTCATTTTTCTCAGCATACTTATAGGTGTTGCAAACATGCTGTTTGTTTTTATGCACACACCACAGTTTTTTTCTGTCCGTCTACGCTTACATATAATAATGATGATTATCTAGTCACACTATAAATAGCAATCAATAAAAAAGTACCCTGTGTTCCTCTGCTTATCAATCAGTGTAATCATTACTTCGAGTCGATTAGATGTGAT] consensusID : consensus_9625#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [CCCCCCGNCCAGGGCTGTTATCCATTAAGGAGTTAANACAGTATGGTGTGGGGTATGACTAGGGNTTCNNCGAGGGGATGGGNNTAGTGGAANGNTCNNCTNTCCTNCCTCTTCTNCCACCTCCTCGNACTCNTTTCNTTACATTAGGCGATGTAGGGTTACAGAGTATTTTCTACGNTATTGTTTTGTNTCGNACATGTGTTGGTGAAAAATGAAGAAATGTTTCCCCTTATTGTCTTTATACTTCACACACACACATAGAGCCTTATGATGAATACCAGTAACCNAATATGTACAGTCGCATTCATTATTACTACTGCTATACTACCTATACAGCAATCTAGTTGGGAGTAAGCCACTGAATTTTTTTTTAACTCACATAAA] [-] EMBL SMRAP146 [CCCCCCGNCCAGGGCTGTTATCCATTAAGGAGTTAANACAGTATGGTGTGGGGTATGACTAGGGNTTCNNCGAGGGGATGGGNNTAGTGGAANGNTCNNCTNTCCTNCCTCTTCTNCCACCTCCTCGNACTCNTTTCNTTACATTAGGCGATGTAGGGTTACAGAGTATTTTCTACGNTATTGTTTTGTNTCGNACATGTGTTGGTGAAAAATGAAGAAATGTTTCCCCTTATTGTCTTTATACTTCACACACACACATAGAGCCTTATGATGAATACCAGTAACCNAATATGTACAGTCGCATTCATTATTACTACTGCTATACTACCTATACAGCAATCTAGTTGGGAGTAAGCCACTGAATTTTTTTTTAACTCACATAAA] consensusID : consensus_9625#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 124 fasta sequence [TCATTAAGATTTATACATATGTGTGATTTGGACTAGTTTTCTACGAGGAATGTTTTAGTGTTATTTTCTTCTTTCTTCCTTNTGTTTCTAGCAAAACAAATATTTTTGCAAAAATAGTACAAGA] [+] EMBL SMRAP176 [TCATTAAGATTTATACATATGTGTGATTTGGACTAGTTTTCTACGAGGAATGTTTTAGTGTTATTTTCTTCTTTCTTCCTTNTGTTTCTAGCAAAACAAATATTTTTGCAAAAATAGTACAAGA] [+] EMBL SMRAP177 [TCATTAAGATTTATACATATGTGTGATTTGGACTAGTTTTCTACGAGGAATGTTTTAGTGTTATTTTCTTCTTTCTTCCTTNTGTTTCTAGCAAAACAAATATTTTTGCAAAAATAGTACAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9625#0 AGAACTAGGTGTTTTTTTATTTTTATCTATACATATACCTCCAAGTTTATTCATATGCAC 60 consensus_9625#3 ------------------------------------------------------------ consensus_9625#2 ------------------------------------------------------------ consensus_9625#1 ------------TGTAGTTTCCAGAGTATTTTCTACTTTATTGTTTTGTTTCGAACATGT 48 consensus_9625#0 TTCTCTCGCACTGTGTGTGTGCCACTGTGTGTTTATGCGAATCTTCTTTGACCGAGTTTT 120 consensus_9625#3 ------------------------------------------------------------ consensus_9625#2 ------------------------------------------------------------ consensus_9625#1 GTTGGTGAAAAATAAAGAAATGTTTCCCCTTATTGTCTTTATACTTCCCCCCCCCCCATA 108 consensus_9625#0 TTTCTTTACTTGTTTATTAATCTCTGGAATGTATTGAAGGTCAACTAACCACGCATGTCT 180 consensus_9625#3 ------------------------------------------------------------ consensus_9625#2 ------------------------------------------------------------ consensus_9625#1 GACCCTTATGATGAATCCCAGTACCAAAATATGTCCAGTCGCATTCATTATTACTACTGC 168 consensus_9625#0 TCAATTTCACACCTCACACTGCTACCTTGTATACACCACTCTTTTCTCGTAAAGTAGTGT 240 consensus_9625#3 ------------------------------------------------------------ consensus_9625#2 ------------------------------------------------------------ consensus_9625#1 TATACTCCCTATCCACCAATTTAGTTGGGAGTAACCCCCTGAATTTTTTTTCCAACTTTG 228 consensus_9625#0 GGATTAATCAATCATCATTGTTATCATTATTATTATTATACA-TATG-TGTGATTTATGA 298 consensus_9625#3 -----------------------TCATTAAGAT--TTATACA-TATG-TGTGATTTG-GA 32 consensus_9625#2 --CCCCCCGNCCAGGGCTGTTATCCATTAAGGAGTTAANACAGTATGGTGTGGGGTATGA 58 consensus_9625#1 GTGTTTTTTGATAGTCATTCTTTCCAAAAAACTCGATGTCGATCATG-TGTAACA---GT 284 ** * * *** *** * consensus_9625#0 CTAGT-TTTCTACG-AGGAAT--GTTTTAGTGTTATTTTCTTCTTTC-TTCCTCTTCTCC 353 consensus_9625#3 CTAGT-TTTCTACG-AGGAAT--GTTTTAGTGTTATTTTCTTCTTTC-TTCCTTNTGTT- 86 consensus_9625#2 CTAGGGNTTCNNCG-AGGGGATGGGNNTAGTGGAANGNTCNNCTNTCCTNCCTCTTCTNC 117 consensus_9625#1 GTTCTCTCTCTGTGTACGTGTGTATTTTACTCATAATTCTCATTGTTGTTTTTGTTGTTA 344 * ** * * * ** * * * * * * * * consensus_9625#0 CACCTCCTCGTACTCTTTTCTTTACAT-TAACG------ATGTAGTTT-ACAGAGTATTT 405 consensus_9625#3 --TCTAGCAAAACAAATATTTTTGCAA-AAATA------GTACAAGA------------- 124 consensus_9625#2 CACCTCCTCGNACTCNTTTCNTTACATTAGGCG------ATGTAGGGTTACAGAGTATTT 171 consensus_9625#1 TTGCCTTTGTCATAAGCTCTTTCTTAAAGAATTTTTTTTGTGAAATTCCTTGTACAGTTA 404 * * * * * * consensus_9625#0 TCTACTTTATTGTTTTGTTTCGAACATGTGTTGGTGAAAA--ATGAAGAAATGTTTCCCC 463 consensus_9625#3 ------------------------------------------------------------ consensus_9625#2 TCTACGNTATTGTTTTGTNTCGNACATGTGTTGGTGAAAA--ATGAAGAAATGTTTCCCC 229 consensus_9625#1 TCAATAATAATAATAATAATAATAATAATAATGGTAAAAGCCAACAATGATTGCTACTAC 464 consensus_9625#0 TTATTGTCTTTATACTTCACACACACACATAGAGCCTTATGATGAATACCAG-TAACAAA 522 consensus_9625#3 ------------------------------------------------------------ consensus_9625#2 TTATTGTCTTTATACTTCACACACACACATAGAGCCTTATGATGAATACCAG-TAACCNA 288 consensus_9625#1 TTACAATTTCGTTACACGTTACATGATCTGATGTCTGAAAAATCAAAGCGACCTATGAAA 524 consensus_9625#0 ATATGTACAGTCGCATTCATTATTACTACTGCTATACTACCTATACAGCAATCTAGTTGG 582 consensus_9625#3 ------------------------------------------------------------ consensus_9625#2 ATATGTACAGTCGCATTCATTATTACTACTGCTATACTACCTATACAGCAATCTAGTTGG 348 consensus_9625#1 ATATGAAGGGCAAGTTTGGGATTCATTTTTCTCAGCATACTTATAGGTGTTGCAAACATG 584 consensus_9625#0 GAGTAAGCCACTGAATTTTTTTACAACTTTGGTGTTTTTTGATAGTCATTCTTTACAAAA 642 consensus_9625#3 ------------------------------------------------------------ consensus_9625#2 GAGTAAGCCACTGAATTTTTTTTTAACTCACATAAA------------------------ 384 consensus_9625#1 CTGTTTGTTTTTATGCACACACCACAGTTTTTTTCTGTCCGTCTACGCTTACATATAATA 644 consensus_9625#0 AACTCGATGTCGATCATGTGTAACAGTGTTCTCTCTCTGTGTACGTGTGTATTTTACTCA 702 consensus_9625#3 ------------------------------------------------------------ consensus_9625#2 ------------------------------------------------------------ consensus_9625#1 ATGATGATTATCTAGTCACACTATAAATAGCAATCAATAAAAAAGTACCCTGTGTTCCTC 704 consensus_9625#0 TAATTCTCATTGNTGNTNTTGNTGNTATTGCCTTTGTCATAAGCTCTTTCTTAAAGAATT 762 consensus_9625#3 ------------------------------------------------------------ consensus_9625#2 ------------------------------------------------------------ consensus_9625#1 TGCTTATCAATCAGTGTAATCATTACTTCGAGTCGATTAGATGTGAT------------- 751 consensus_9625#0 TTTTTTGTGAAATTCCTTGTACAGTTATCANTANTANTANTANTANTANTANTANTANTG 822 consensus_9625#3 ------------------------------------------------------------ consensus_9625#2 ------------------------------------------------------------ consensus_9625#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||