These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1365 fasta sequence [CAATCTCAATAGCGAGAGAGTTGACAGAAACGCTTAAAACATAATCAAATAAGGCCCAGCAATAAGCTGTTACACCGGCGGCTCCTTGGTCAAATACAAACAAGTTCAAATTATTGATTTCATGGAGGATGGTGCTTTCGGGATTTGCGTAATCCGAAAGCGAATTCATGTTTTCTTCTTTAATTCGACGTAACTCACATAAATGATTAAAACTTTTCTTGGCTGCTAGCTCCAGTACATTAGCTAATTTTGAATCGAAATTCGAAGTGTATAGCGGAATATCAGATGAGATTAAATTTATCAGTGAACCAATATTGTTCGATTTCATGGACAAATCCATTTGTGAATGGAACCATTTTAGTTGATCAATCCATTGAGCCAATGAATCAATAAAATCTGAGTTTGTTACATAAATTCTAGCGATTGTGTAGTAGTTAGATAAGGCGACACACAGAGCTGAGTTTACATCCTCATTAGACGCAATTAAGGATGATAACCAGGTGGGATCAACAAGCGATCTATAATTTTGGAAGTGCGATAAGATTTCGTCTACCCATATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTATTCTTTGCCTAGCTTTCTCTACTTGTTGACAACGGTACTCGGAAGACGACAGATCATCGTGAGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTTCGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGATTCCAAGCAAGTACTTTGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACATTCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACAAGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTGGGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGCTTTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATGTATCTTGACACGCAGGTCCAAGTGCGTGCCTTAATATTCTTGTTAATCGAAACGGAACTCTTTCTGCAACTCTCAGGCTTTTCCCTTTATCAAAACAAACATTATAATCTATGTGGACAATGTGCCCCGTAGATAGGTCTATGAGGAGATTATCAAGATGTCGATCACCAAGACCAACCAGATATCCCAAACTGCTGAGCAAACCAGCTGACTTGGCAAATGTGCGTGTAACCCTCCACCAACTAGCGCATGAGGGAT] [+] EMBL CD117832 [CAATCTCAATAGCGAGAGAGTTGACAGAAACGCTTAAAACATAATCAAATAAGGCCCAGCAATAAGCTGTTACACCGGCGGCTCCTTGGTCAAATACAAACAAGTTCAAATTATTGATTTCATGGAGGATGGTGCTTTCGGGATTTGCGTAATCCGAAAGCGAATTCATGTTTTCTTCTTTAATTCGACGTAACTCACATAAATGATTAAAACTTTTCTTGGCTGCTAACTCCAGTACATTAGCTAATTGTGAATCGAAATTCGAAGTGTATAGCGGAATATCAGATGAGATTAAATNTATCAGTGAACCAATATTGTTCGATTTCATGGACAAATCCATTTGTGAATGGAACCATTTTAGTTGATCAATCCATTGAGCCAATGAATCAATAAAATCTGAGTTTGGTACATAAATTCTAGCGATTGTGTAGTAGTTATATTAGGCGACACACAGAGCTGAGTTTACATCCTCATTATACGCAATTAAGGATGATAACCAGGTGGGATCAACAAGCGATCTATAATTTTGGAAGTGCGATAAGATTTCGTCTACCCAT ] [-] EMBL CD130427 [ ATCTCAATAGCGAGAGAGTTGACAGAAACGCTTAAAACATAATCAAATAAGGCCCAGCAATAAGCTGTTACACCGGCGGCTCCTTGGTCAAATACAAACAAGTTCAAATTATTGATTTCATGGAGGATGGTGCTTTCGGGATTTGCGTAATCCGAAAGCGAATTCACGTTTTCTTCTTTAATTCGACGTAACTCACATAAATGATTA ] [+] EMBL CD094591 [ TCAAATACAAACAAGTTCAAATTATTGATTTCATGGAGGATGGTGCTTTCGGGATTTGCGTAATCCGAAAGCGAATTCATGTTTTCTTCTTTAATTCGACGTAACTCACATAAATGATTAAAACTTTTCTTGGCTGCTAGCTCCAGTACATTAGCTAATTTTGAATCGAAATTCGAAGTGTATAGCGGAATATCAGATGAGATTAAATTTATCAGTGAACCAATATTGTTCGATTTCATGGACAAATCCATTTGTGAATGGAACCATTTTAGTTGATCAATCCATTGAGCCAATGAATCAATAAAATCTGAGTTTGTTACATAAATTCTAGCGATTGTGTAGTAGTTAGATAAGGCGACACACAGAGCTGAGTTTACATCCTCATTAGACGCAATTAAGGATGATAACCAGGTGGGATCAACAAGCGATCTATAATTTTGGAAGTGCGATAAGATTTCGTCTACCCATATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTATTCTTTGCCTAGCTTTCTCTACTTGTTGACAACGGTACTCGGAAGACGACAGATCATCGTGAGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAAC ] [+] EMBL CD158651 [ AATACAAACAAGTTCAAATTATTGATTTCATGGAGGATGGTGCTTTCGGGATTTGCGTAATCCG AAGCGAATTCACGTTTTCTTCTTTAATTCGACGTAACTCACATAAATGATTAAAACTTTTCTTGGCTGCTAGCTCCAGTACATTAGCTAATTTTGAATCGAAATTCGAAGTGTATAGCGGAATATCAGATGAGATTAAATTTATCAGTGAACCAATATTGTTCGATTTCATGGACAAATCCATTTGTGAATGGAACCATTTTAGTTGATCAATCCATTGAGCCAATGAATCAATAAAATCTGAGTTTGTTACATAAATTCTAGCGATTGTGTAGTAGTTAGATAAGGCGACACACAGAGCTGAGTTTACATCCTCATTAGACGCAATTAAGGATGATAACCAGGTGGGATCAACAAGCGATCTATAATTTTGGAAGTGCGATAAGATTTCGTCTACCCATATTTTATTCTGTTTTGAAAATT ] [+] EMBL CD094694 [ CGTCTACCCATATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTATTCTTTGCCTAGCTTTCTCTACTTGTTGACAACGGTACTCGGAAGACGACAGATCATCGTGAGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTTCGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGATTCCAAGCAAGTACTTTGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACATTCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACAAGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTGGGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGCTTTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATG ] [-] EMBL CD094992 [ GTCTACCCATATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTATTCTTTGCCTAGCTTTCTCTACTTGTTGACAACGGTACTCGGAAGACGACAGATCATCGTGAGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTTCGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGATTCCAAGCAAGTACTTTGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACATTCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACAAGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTGGGAACTGGATGTGGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGCTTTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATGT ] [-] EMBL CD095005 [ TGGCACGGGTACTCGGAAGACGACAGATCATCGTGAGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTTCGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGATTCCAAGCAAGTACTTTGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACATTCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACAAGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTGGGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGCTTTGAGTTGTATTAAAGGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATGT ] [-] EMBL CD094989 [ GTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGATTCCAAGCAAGTACTNTGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACATTCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACAAGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTGGGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGCTTTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATGT ] [+] EMBL CD123744 [ AGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATGTATCTTGACACGCAGGTCCAAGTGCGTGCCTTAATATTCTTGTTAATCGAAACGGAACTCTTTCTGCAACTCTCAGGCTTTTCCCTTTATCAAAACAAACATTATAATCTATGTGGACAATGTGCCCCGTAGATAGGTCTATGAGGAGATTATCAAGATGTCGATCACCAAGACCAACCAGATATCCCAAACTGCTGAGCAAACCAGCTGACTTGGCAAATGTGCGTGTAACCCTCCACCAACTAGCGCATGAGGGAT] consensusID : consensus_9627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [AAAGCCATAGTTGACCTAAGAAGCGATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTATTCTTTGCCTAGCTTTCTCTACTTGTTGACAATGGTACTCGGAAGACGACAGATCATCGTGAGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTTCGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGATTCCAAGCAAGTACTTCGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACATTCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACAAGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTGGGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGCATTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATGT] [-] EMBL CD095126 [AAAGCCATAGTTGACCTAAGAAGCGATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTATTCTTTGCCTAGCTTTCTCTACTTGTTGACAATGGTACTCGGAAGACGACAGATCATCGTGAGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTTCGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGATTCCAAGCAAGTACTTCGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACATTCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACAAGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTGGGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGCATTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9627#0 CAATCTCAATAGCGAGAGAGTTGACAGAAACGCTTAAAACATAATCAAATAAGGCCCAGC 60 consensus_9627#1 ------------------------------------------------------------ consensus_9627#0 AATAAGCTGTTACACCGGCGGCTCCTTGGTCAAATACAAACAAGTTCAAATTATTGATTT 120 consensus_9627#1 ------------------------------------------------------------ consensus_9627#0 CATGGAGGATGGTGCTTTCGGGATTTGCGTAATCCGAAAGCGAATTCATGTTTTCTTCTT 180 consensus_9627#1 ------------------------------------------------------------ consensus_9627#0 TAATTCGACGTAACTCACATAAATGATTAAAACTTTTCTTGGCTGCTAGCTCCAGTACAT 240 consensus_9627#1 ------------------------------------------------------------ consensus_9627#0 TAGCTAATTTTGAATCGAAATTCGAAGTGTATAGCGGAATATCAGATGAGATTAAATTTA 300 consensus_9627#1 ------------------------------------------------------------ consensus_9627#0 TCAGTGAACCAATATTGTTCGATTTCATGGACAAATCCATTTGTGAATGGAACCATTTTA 360 consensus_9627#1 ------------------------------------------------------------ consensus_9627#0 GTTGATCAATCCATTGAGCCAATGAATCAATAAAATCTGAGTTTGTTACATAAATTCTAG 420 consensus_9627#1 ------------------------------------------------------------ consensus_9627#0 CGATTGTGTAGTAGTTAGATAAGGCGACACACAGAGCTGAGTTTACATCCTCATTAGACG 480 consensus_9627#1 ------------------------------------------------------------ consensus_9627#0 CAATTAAGGATGATAACCAGGTGGGATCAACAAGCGATCTATAATTTTGGAAGTGCGATA 540 consensus_9627#1 ---------------------------------------------------AAAGCCATA 9 * ** *** consensus_9627#0 AGATTTCGTCTACCCAT--ATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTAT 598 consensus_9627#1 G---TTGACCTAAGAAGCGATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTAT 66 ** *** * ***************************************** consensus_9627#0 TCTTTGCCTAGCTTTCTCTACTTGTTGACAACGGTACTCGGAAGACGACAGATCATCGTG 658 consensus_9627#1 TCTTTGCCTAGCTTTCTCTACTTGTTGACAATGGTACTCGGAAGACGACAGATCATCGTG 126 ******************************* **************************** consensus_9627#0 AGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTT 718 consensus_9627#1 AGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTT 186 ************************************************************ consensus_9627#0 CGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGA 778 consensus_9627#1 CGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGA 246 ************************************************************ consensus_9627#0 TTCCAAGCAAGTACTTTGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACAT 838 consensus_9627#1 TTCCAAGCAAGTACTTCGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACAT 306 **************** ******************************************* consensus_9627#0 TCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACA 898 consensus_9627#1 TCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACA 366 ************************************************************ consensus_9627#0 AGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTG 958 consensus_9627#1 AGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTG 426 ************************************************************ consensus_9627#0 GGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGC 1018 consensus_9627#1 GGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGC 486 ************************************************************ consensus_9627#0 TTTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGC 1078 consensus_9627#1 ATTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGC 546 *********************************************************** consensus_9627#0 AGTAAACCGGAACGTCCCACGTACTAATGTATCTTGACACGCAGGTCCAAGTGCGTGCCT 1138 consensus_9627#1 AGTAAACCGGAACGTCCCACGTACTAATGT------------------------------ 576 ****************************** consensus_9627#0 TAATATTCTTGTTAATCGAAACGGAACTCTTTCTGCAACTCTCAGGCTTTTCCCTTTATC 1198 consensus_9627#1 ------------------------------------------------------------ consensus_9627#0 AAAACAAACATTATAATCTATGTGGACAATGTGCCCCGTAGATAGGTCTATGAGGAGATT 1258 consensus_9627#1 ------------------------------------------------------------ consensus_9627#0 ATCAAGATGTCGATCACCAAGACCAACCAGATATCCCAAACTGCTGAGCAAACCAGCTGA 1318 consensus_9627#1 ------------------------------------------------------------ consensus_9627#0 CTTGGCAAATGTGCGTGTAACCCTCCACCAACTAGCGCATGAGGGAT 1365 consensus_9627#1 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Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||