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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1365 fasta sequence
[CAATCTCAATAGCGAGAGAGTTGACAGAAACGCTTAAAACATAATCAAATAAGGCCCAGCAATAAGCTGTTACACCGGCGGCTCCTTGGTCAAATACAAACAAGTTCAAATTATTGATTTCATGGAGGATGGTGCTTTCGGGATTTGCGTAATCCGAAAGCGAATTCATGTTTTCTTCTTTAATTCGACGTAACTCACATAAATGATTAAAACTTTTCTTGGCTGCTAGCTCCAGTACATTAGCTAATTTTGAATCGAAATTCGAAGTGTATAGCGGAATATCAGATGAGATTAAATTTATCAGTGAACCAATATTGTTCGATTTCATGGACAAATCCATTTGTGAATGGAACCATTTTAGTTGATCAATCCATTGAGCCAATGAATCAATAAAATCTGAGTTTGTTACATAAATTCTAGCGATTGTGTAGTAGTTAGATAAGGCGACACACAGAGCTGAGTTTACATCCTCATTAGACGCAATTAAGGATGATAACCAGGTGGGATCAACAAGCGATCTATAATTTTGGAAGTGCGATAAGATTTCGTCTACCCATATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTATTCTTTGCCTAGCTTTCTCTACTTGTTGACAACGGTACTCGGAAGACGACAGATCATCGTGAGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTTCGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGATTCCAAGCAAGTACTTTGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACATTCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACAAGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTGGGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGCTTTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATGTATCTTGACACGCAGGTCCAAGTGCGTGCCTTAATATTCTTGTTAATCGAAACGGAACTCTTTCTGCAACTCTCAGGCTTTTCCCTTTATCAAAACAAACATTATAATCTATGTGGACAATGTGCCCCGTAGATAGGTCTATGAGGAGATTATCAAGATGTCGATCACCAAGACCAACCAGATATCCCAAACTGCTGAGCAAACCAGCTGACTTGGCAAATGTGCGTGTAACCCTCCACCAACTAGCGCATGAGGGAT]
[+] EMBL CD117832 [CAATCTCAATAGCGAGAGAGTTGACAGAAACGCTTAAAACATAATCAAATAAGGCCCAGCAATAAGCTGTTACACCGGCGGCTCCTTGGTCAAATACAAACAAGTTCAAATTATTGATTTCATGGAGGATGGTGCTTTCGGGATTTGCGTAATCCGAAAGCGAATTCATGTTTTCTTCTTTAATTCGACGTAACTCACATAAATGATTAAAACTTTTCTTGGCTGCTAACTCCAGTACATTAGCTAATTGTGAATCGAAATTCGAAGTGTATAGCGGAATATCAGATGAGATTAAATNTATCAGTGAACCAATATTGTTCGATTTCATGGACAAATCCATTTGTGAATGGAACCATTTTAGTTGATCAATCCATTGAGCCAATGAATCAATAAAATCTGAGTTTGGTACATAAATTCTAGCGATTGTGTAGTAGTTATATTAGGCGACACACAGAGCTGAGTTTACATCCTCATTATACGCAATTAAGGATGATAACCAGGTGGGATCAACAAGCGATCTATAATTTTGGAAGTGCGATAAGATTTCGTCTACCCAT ]
[-] EMBL CD130427 [ ATCTCAATAGCGAGAGAGTTGACAGAAACGCTTAAAACATAATCAAATAAGGCCCAGCAATAAGCTGTTACACCGGCGGCTCCTTGGTCAAATACAAACAAGTTCAAATTATTGATTTCATGGAGGATGGTGCTTTCGGGATTTGCGTAATCCGAAAGCGAATTCACGTTTTCTTCTTTAATTCGACGTAACTCACATAAATGATTA ]
[+] EMBL CD094591 [ TCAAATACAAACAAGTTCAAATTATTGATTTCATGGAGGATGGTGCTTTCGGGATTTGCGTAATCCGAAAGCGAATTCATGTTTTCTTCTTTAATTCGACGTAACTCACATAAATGATTAAAACTTTTCTTGGCTGCTAGCTCCAGTACATTAGCTAATTTTGAATCGAAATTCGAAGTGTATAGCGGAATATCAGATGAGATTAAATTTATCAGTGAACCAATATTGTTCGATTTCATGGACAAATCCATTTGTGAATGGAACCATTTTAGTTGATCAATCCATTGAGCCAATGAATCAATAAAATCTGAGTTTGTTACATAAATTCTAGCGATTGTGTAGTAGTTAGATAAGGCGACACACAGAGCTGAGTTTACATCCTCATTAGACGCAATTAAGGATGATAACCAGGTGGGATCAACAAGCGATCTATAATTTTGGAAGTGCGATAAGATTTCGTCTACCCATATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTATTCTTTGCCTAGCTTTCTCTACTTGTTGACAACGGTACTCGGAAGACGACAGATCATCGTGAGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAAC ]
[+] EMBL CD158651 [ AATACAAACAAGTTCAAATTATTGATTTCATGGAGGATGGTGCTTTCGGGATTTGCGTAATCCG AAGCGAATTCACGTTTTCTTCTTTAATTCGACGTAACTCACATAAATGATTAAAACTTTTCTTGGCTGCTAGCTCCAGTACATTAGCTAATTTTGAATCGAAATTCGAAGTGTATAGCGGAATATCAGATGAGATTAAATTTATCAGTGAACCAATATTGTTCGATTTCATGGACAAATCCATTTGTGAATGGAACCATTTTAGTTGATCAATCCATTGAGCCAATGAATCAATAAAATCTGAGTTTGTTACATAAATTCTAGCGATTGTGTAGTAGTTAGATAAGGCGACACACAGAGCTGAGTTTACATCCTCATTAGACGCAATTAAGGATGATAACCAGGTGGGATCAACAAGCGATCTATAATTTTGGAAGTGCGATAAGATTTCGTCTACCCATATTTTATTCTGTTTTGAAAATT ]
[+] EMBL CD094694 [ CGTCTACCCATATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTATTCTTTGCCTAGCTTTCTCTACTTGTTGACAACGGTACTCGGAAGACGACAGATCATCGTGAGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTTCGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGATTCCAAGCAAGTACTTTGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACATTCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACAAGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTGGGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGCTTTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATG ]
[-] EMBL CD094992 [ GTCTACCCATATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTATTCTTTGCCTAGCTTTCTCTACTTGTTGACAACGGTACTCGGAAGACGACAGATCATCGTGAGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTTCGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGATTCCAAGCAAGTACTTTGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACATTCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACAAGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTGGGAACTGGATGTGGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGCTTTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATGT ]
[-] EMBL CD095005 [ TGGCACGGGTACTCGGAAGACGACAGATCATCGTGAGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTTCGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGATTCCAAGCAAGTACTTTGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACATTCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACAAGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTGGGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGCTTTGAGTTGTATTAAAGGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATGT ]
[-] EMBL CD094989 [ GTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGATTCCAAGCAAGTACTNTGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACATTCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACAAGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTGGGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGCTTTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATGT ]
[+] EMBL CD123744 [ AGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATGTATCTTGACACGCAGGTCCAAGTGCGTGCCTTAATATTCTTGTTAATCGAAACGGAACTCTTTCTGCAACTCTCAGGCTTTTCCCTTTATCAAAACAAACATTATAATCTATGTGGACAATGTGCCCCGTAGATAGGTCTATGAGGAGATTATCAAGATGTCGATCACCAAGACCAACCAGATATCCCAAACTGCTGAGCAAACCAGCTGACTTGGCAAATGTGCGTGTAACCCTCCACCAACTAGCGCATGAGGGAT]
consensusID : consensus_9627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence
[AAAGCCATAGTTGACCTAAGAAGCGATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTATTCTTTGCCTAGCTTTCTCTACTTGTTGACAATGGTACTCGGAAGACGACAGATCATCGTGAGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTTCGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGATTCCAAGCAAGTACTTCGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACATTCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACAAGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTGGGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGCATTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATGT]
[-] EMBL CD095126 [AAAGCCATAGTTGACCTAAGAAGCGATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTATTCTTTGCCTAGCTTTCTCTACTTGTTGACAATGGTACTCGGAAGACGACAGATCATCGTGAGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTTCGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGATTCCAAGCAAGTACTTCGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACATTCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACAAGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTGGGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGCATTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGCAGTAAACCGGAACGTCCCACGTACTAATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9627#0 CAATCTCAATAGCGAGAGAGTTGACAGAAACGCTTAAAACATAATCAAATAAGGCCCAGC 60
consensus_9627#1 ------------------------------------------------------------
consensus_9627#0 AATAAGCTGTTACACCGGCGGCTCCTTGGTCAAATACAAACAAGTTCAAATTATTGATTT 120
consensus_9627#1 ------------------------------------------------------------
consensus_9627#0 CATGGAGGATGGTGCTTTCGGGATTTGCGTAATCCGAAAGCGAATTCATGTTTTCTTCTT 180
consensus_9627#1 ------------------------------------------------------------
consensus_9627#0 TAATTCGACGTAACTCACATAAATGATTAAAACTTTTCTTGGCTGCTAGCTCCAGTACAT 240
consensus_9627#1 ------------------------------------------------------------
consensus_9627#0 TAGCTAATTTTGAATCGAAATTCGAAGTGTATAGCGGAATATCAGATGAGATTAAATTTA 300
consensus_9627#1 ------------------------------------------------------------
consensus_9627#0 TCAGTGAACCAATATTGTTCGATTTCATGGACAAATCCATTTGTGAATGGAACCATTTTA 360
consensus_9627#1 ------------------------------------------------------------
consensus_9627#0 GTTGATCAATCCATTGAGCCAATGAATCAATAAAATCTGAGTTTGTTACATAAATTCTAG 420
consensus_9627#1 ------------------------------------------------------------
consensus_9627#0 CGATTGTGTAGTAGTTAGATAAGGCGACACACAGAGCTGAGTTTACATCCTCATTAGACG 480
consensus_9627#1 ------------------------------------------------------------
consensus_9627#0 CAATTAAGGATGATAACCAGGTGGGATCAACAAGCGATCTATAATTTTGGAAGTGCGATA 540
consensus_9627#1 ---------------------------------------------------AAAGCCATA 9
* ** ***
consensus_9627#0 AGATTTCGTCTACCCAT--ATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTAT 598
consensus_9627#1 G---TTGACCTAAGAAGCGATTTTATTCTGTTTTGAAAATTCTTCATGTAGATCTTCTAT 66
** *** * *****************************************
consensus_9627#0 TCTTTGCCTAGCTTTCTCTACTTGTTGACAACGGTACTCGGAAGACGACAGATCATCGTG 658
consensus_9627#1 TCTTTGCCTAGCTTTCTCTACTTGTTGACAATGGTACTCGGAAGACGACAGATCATCGTG 126
******************************* ****************************
consensus_9627#0 AGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTT 718
consensus_9627#1 AGTGGCAGCTATTAAAGTCAAATAACGAGTTTTTATAAACGAGGCATGTTGGCGAGCTTT 186
************************************************************
consensus_9627#0 CGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGA 778
consensus_9627#1 CGCCAATTCTGTCCAAATAGTTAAACGTGAAACAACTTCGTCCAAAGACGAAAATAATGA 246
************************************************************
consensus_9627#0 TTCCAAGCAAGTACTTTGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACAT 838
consensus_9627#1 TTCCAAGCAAGTACTTCGAATTAACTCAACAAGTCTTACTGTTAAAAGACCTGAATACAT 306
**************** *******************************************
consensus_9627#0 TCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACA 898
consensus_9627#1 TCGAAGCTCCGAATCAACACGGCGTAAACGTCGATATGTTGATACTGTTTGATAATTACA 366
************************************************************
consensus_9627#0 AGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTG 958
consensus_9627#1 AGAATTTGTGCTACCGCCGCCGTGAAAAGCAGCTAAATGAATGAAATCAGTCACAGTTTG 426
************************************************************
consensus_9627#0 GGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGC 1018
consensus_9627#1 GGAACTGGATGTTGGATGCTTTTTTTGTTGCCAATCCACTAAAGGATCGATTAGAAAAGC 486
************************************************************
consensus_9627#0 TTTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGC 1078
consensus_9627#1 ATTGAGTTGTATTAAAAGAGGGTCAACTATAAGACGAGCTGCTTGTAACCCACTTTCTGC 546
***********************************************************
consensus_9627#0 AGTAAACCGGAACGTCCCACGTACTAATGTATCTTGACACGCAGGTCCAAGTGCGTGCCT 1138
consensus_9627#1 AGTAAACCGGAACGTCCCACGTACTAATGT------------------------------ 576
******************************
consensus_9627#0 TAATATTCTTGTTAATCGAAACGGAACTCTTTCTGCAACTCTCAGGCTTTTCCCTTTATC 1198
consensus_9627#1 ------------------------------------------------------------
consensus_9627#0 AAAACAAACATTATAATCTATGTGGACAATGTGCCCCGTAGATAGGTCTATGAGGAGATT 1258
consensus_9627#1 ------------------------------------------------------------
consensus_9627#0 ATCAAGATGTCGATCACCAAGACCAACCAGATATCCCAAACTGCTGAGCAAACCAGCTGA 1318
consensus_9627#1 ------------------------------------------------------------
consensus_9627#0 CTTGGCAAATGTGCGTGTAACCCTCCACCAACTAGCGCATGAGGGAT 1365
consensus_9627#1 -----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||