These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9630#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1163 fasta sequence [TGCTTTGAATACCGGTCACATTGGAGAATATGGTCAGAAATCTATATCGTCTAATCGACATCAGATGTTGCGAAGCCGCCGGATAAAATATTCGATGAATGAAATATTATTAGATCTCTTACCAAAATGAGGGTGATTCGCGGTAGTTTTTCAAATGTGGCCACATTAAATCTAGTTCGTTTCGTATTCCCTGCAAACGTCGAATATCAAAACGTAACGAACCAGTACAATTTGGTTGTCTATTGGGGAAAATGGTAGGCCTGAAAATATTGATATACATAATGCATTACACTTTATCAAACAATAACATCCATTCACTGACATGTACGTTTCGGAAACGTGATCACCCAAACTTATCACTAAACAGCTATAATGCCTGTGTTGAACGTGTGAAGCATTTGAAGTAATTAATTACCTCATAGTATTGGAAAGGCGTACATAAAGGTTCTCATTAAAATCTTATCAACGACACCAAACTGTTACACGGAATGCAGTATCCTTGTTGCGGTGGTCAGATATATTACTGTGAATCTAGGAACAGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACCTGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAACACATACCAGTGCATTCTAGATAATACAGAGTCTATGTGTAATACACTGTTGGACAGACGGAAGATGATCTTAAGTAGACGTACAATCGATTACAGACACCTAAACTCGAATCCAAGCTGTGACGGATGTGGTGTTTATAAGAACCAATGATTCTTCAGTATTGATGGCTGTTTTTAACTCGAATGGCA-AATACAGTACAATCGTTCCTGCTCATCTAATACTTCTTGATGAAATTGCGTTATTGCTGGTATTGATAGTTTATACTTCAATCAAATACTTC-AATTATCATAATCCGCACGTATATCTTCATAAATCAAAGTAATCTTACC] [+] EMBL CD115660 [TGCTTTGAATACCGGTCACATTGGAGAATATGGTCAGAAATCTATATCGTCTAATCGACATCAGATGTTGCGAAGCCGCCGGATAAAATATTCGATGAATGAAATATTATTAGATCTCTTACCAAAATGAGGGTGATTCGCGGTAGTTTTTCAAATGTGGCCACATTAAATCTAGTTCGTTTCGTATTCCCTGCAAACGTCGAATATCAAAACGTAACGAACCAGTACAATTTGGTTGTCTATTGGGGAAAATGGTAGGCCTGAAAATATTGATATACATAATGCATTACACTTTATCAAACAATAACATCCATTCACTGACATGTACGTTTCGG ] [-] EMBL CD115878 [ GCTTTGAATACCGGTCACATTGGAGAATATGGTCAGAAATCTATATCGTCTAATCGACATCAGATGTTGCGAAGCCGCCGGATAAAATATTCGATGAATGAAATATTATTAGATCTCTTACCAAAATGAGGGTGATTCGCGGTAGTTTTTCAAATGTGGCCACATTAAATCTAGTTCGTTTCGTATTCCCTGCAAACGTCGAATATCAAAACGTAACGAACCAGTACAATTTGGTTGTCTATTGGGGAAAATGGTAGGCCTGAAAATAATGATATACATAATGCATTACACTTTATCAAACAATAACATCCATTCACTGACATGTACGTTTCGGAAACGTGATCACCCAAACTTATCACTAAACAGCTATAATGCCTGTGTTGAACGTGTGAAGCATTTGAAGTAATTAATTACCTCATAGTATTGGAAAGGCGTACATAAAGGTTCTCATTAAAATCTTATCAACGACACCA ] [-] EMBL CD118966 [ CAGCTATAATGCCTGTGTTGAACGTGTGAAGCATTTGAAGTAATTAATTACCTCATAGTATTGGAAAGGCGTACATAAAGGTTCTCATTAAAATCTTATCAACGATACCAAACTGTTACACGGAATGCAGTATCCTTGTTGCGGTGGTCAGATATATTACTGTGAATCTAGGAACAGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACCTGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAACA ] [-] EMBL CD119035 [ GTTGAACGTGTGAAGCATTTGAAGTAATTAATTACCTCATAGTATTGGAAAGGCGTACATAAAGGTTCTCATTAAAATCTTATCAACGACACTAAACTGTTACACGGAATGCAGTATCCTTGTTGCGGTGGTCAGATATATTACTGTGAATCTAGGAACAGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACCTGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAACA ] [-] EMBL CD119247 [ gACTGTTACACGGAATGCAGTATCCTTGTTNCGGTGGTCAGATATATTACTGTGAATCTAGGAACAGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACCTGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAACAC ] [-] EMBL CD119282 [ ACGGAATGCAGTATCC TGTTTCGGTGGTCAGATATATTACTGTGAATCTAGGAACAGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACCTGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAACAC ] [+] EMBL CD121174 [ CTGTGAATCTAGGAACAGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACCTGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAATACATACCAGTGCATTCTAGATAATACAGAGTCTATGTGTAATACACTGTTGGACAGACGGAAGATGATCTTAAGTAGACGTACAATCGATTACAGACACCTAAACTCGAATCCAAGCTGTGACGGATGTGGTGTTTATAAGAACCAATGATTCTTCAGTATTGATGGCTGTTTTTAACTCGAATGGCA AATACAGTACAATCGTTCCTGCTCATCTAATACTTCTTGATGAAATTGCGNTATTGCTGGTATTGATAGTTTATACTTCAATC AATACTTC AATTATCATAATCCGCACGTATATCTTCATAAATCAAAGTAATCTTACC] [+] EMBL CD121208 [ CTGTGAATCTAGGAACAGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACCTGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAATACATACCAGTGCATTCTAGATAATACAGAGTCTATGTGTAATACACTGTTGGACAGACGGAAGATGATCTTAAGTAGACGTACAATCGATTACAGACACCTAAACTCGAATCCAAGCTGTGACGGATGTGGTGTTTATAAGAACCAATGATTCTTCAGTATTGATGGCTGNTTTTAACTCGAAT GCANAATACAGTACAATCGTTCCTGCTCATCTAATACTTCTTGATGAAATTGCGTTATTGCTGGTATTGATAGTTTATACTTCAATCAAATACTTCAAATTAT ] [+] EMBL CD124975 [ CGTATGGGCGCGCAGAAAATCAATAGTTAATGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAACACATACCAGTGCATTCTAGATAATACAGAGTCTATGTGTAATACACTGTTGGACAGACGGAAGATGATCTTAAGTAGACGTACAATCGATTACAGACACCTAAACTCGAATCCAAGCTGTGACGGATGTGGTGTTTATAAGAACCAATGATTCTTCAGTATTGATGGCTGTTTTTAACTCGAATGCAA AATACAGTACAATCGTTCCTGCTCATCTAATACTTCTTGATGAAATTGCGTTATTGCTGGTATTGATAGTTTATACTTCAATCGAATACTTC AAa ] consensusID : consensus_9630#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [CGTTACAGCCCCTAACCTCGATCCAAGCTATGGGGGATGGGGTGTTATATGAACCCAATGACTCCTTTGCATTGAATAATTTTTTCATCTCGAATTCAAAATTCAGTACAATCGTTCCTGCTCATCTAATACTTCTTGGATGAAATTGCGTTATGGCTGGGATAGATAGTTTATACTTCAATCAAATACTTCAAATTATCATACTCACGCACGTATATTTTTCATAAATCAAAAGTAATCTTACCACAATCCATGAATGGTGAAATCTCTCAAATCTCTCGGTAGCCTACACTGAAAGAGAGAATTTCAAATAATTGTTACTCAGTTGAACAGAGATGTATATGAACATAATATGTGCTGAGACTTATCAAATGCGATTCCAGTGACTAGATAAATTTTAGAAGTGAAATAGGTAGTTTCAGTTAGTTGCCTTCACAAACTGACCCTTGATATGAACTTCACATTGCTTCACATTACCAACATAATAGACCTGAACACGGACAATATGATTGCACATCTACTAAATTGATTGAAATGGTTTACAATTTCAAGCAATCTGTG] [-] EMBL AI390090 [CGTTACAGCCCCTAACCTCGATCCAAGCTATGGGGGATGGGGTGTTATATGAACCCAATGACTCCTTTGCATTGAATAATTTTTTCATCTCGAATTCAAAATTCAGTACAATCGTTCCTGCTCATCTAATACTTCTTGGATGAAATTGCGTTATGGCTGGGATAGATAGTTTATACTTCAATCAAATACTTCAAATTATCATACTCACGCACGTATATTTTTCATAAATCAAAAGTAATCTTACCACAATCCATGAATGGTGAAATCTCTCAAATCTCTCGGTAGCCTACACTGAAAGAGAGAATTTCAAATAATTGTTACTCAGTTGAACAGAGATGTATATGAACATAATATGTGCTGAGACTTATCAAATGCGATTCCAGTGACTAGATAAATTTTAGAAGTGAAATAGGTAGTTTCAGTTAGTTGCCTTCACAAACTGACCCTTGATATGAACTTCACATTGCTTCACATTACCAACATAATAGACCTGAACACGGACAATATGATTGCACATCTACTAAATTGATTGAAATGGTTTACAATTTCAAGCAATCTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9630#0 TGCTTTGAATACCGGTCACATTGGAGAATATGGTCAGAAATCTATATCGTCTAATCGACA 60 consensus_9630#1 ------------------------------------------------------------ consensus_9630#0 TCAGATGTTGCGAAGCCGCCGGATAAAATATTCGATGAATGAAATATTATTAGATCTCTT 120 consensus_9630#1 --------------------------------------------CGTTAC--AGCCCCTA 14 *** * ** consensus_9630#0 ACCAAAATGAGGGTGATTCGCGGTAGTTTTTCAAATGTGGCCACATTAAATCTAGTTCGT 180 consensus_9630#1 ACCTCGATCCAAGCTATGGGGGATGGGGTGTT--ATATGAACCCAATGACTCCTTTGCAT 72 *** ** * ** * * * * * * ** ** * ** * * ** * * * consensus_9630#0 TTCGTATTCCCTGCAAACGTCGAATATCAAAACGTAACG-AACCAGTACAATTTGGTTG- 238 consensus_9630#1 TGAATAATTTTTTC--ATCTCGAAT-TCAAAATTCAGTACAATCGTTCCTGCTCATCTAA 129 * ** * * * * ****** ****** * ** * * * * * consensus_9630#0 --TCTATTGGGGAAAATGGTAGGCCTGAAAATATTGATA-TACATAATGCATTACACTTT 295 consensus_9630#1 TACTTCTTGGATGAAATTGCGTTATGGCTGGGATAGATAGTTTATACTTCAATCAAATAC 189 * **** **** * * ** **** * *** * ** * * * consensus_9630#0 ATCAAACAATAACATCCATTCACTGACATGTACGTTTCGGAAACGTGATCACCCAAACTT 355 consensus_9630#1 TTCAAATTATCATACTCACGCA----CGTATATTTTTCATAAATCAAAAG---TAATCTT 242 ***** ** * * ** ** * * ** **** *** * ** *** consensus_9630#0 ATCACTAAACAGCTATAATGCCTGTGTTGAACGTGTGAAGCATTTGAAGTAATTAATTAC 415 consensus_9630#1 ACCACAATCCA----------------TGAATG-GTGAAATCTCTCAAATCTCTCGGTAG 285 * *** * ** **** * ***** * * ** * * ** consensus_9630#0 CTCATAGTATTGGAAAGGCGTACATAAAGGTTCTCATTAAAATCTTA-TCAACGACACCA 474 consensus_9630#1 CCTACACT----GAAAG--------AGAGAATTTCAAATAATTGTTACTCAGTTGAACAG 333 * * * * ***** * ** * *** ** * *** *** ** consensus_9630#0 AACTGTTACACGGAATGCAGTATCCTTGTTGCGGTGGTCAGATATATTAC-TGTGAATCT 533 consensus_9630#1 AGATGT-ATATG-AACATAATAT----------GTGCTGAGACTTATCAAATGCGATTCC 381 * *** * * * ** * *** *** * *** *** * ** ** ** consensus_9630#0 AGGAAC-AGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACC 592 consensus_9630#1 AGTGACTAGATAAATTTTAGAAGTGAAATAG-GTAGTTTCAGTTAGTTGCCTTCACAAAC 440 ** ** ** * * * * * ** ** * * * * * * ** ***** * consensus_9630#0 TGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTT 652 consensus_9630#1 TGACCCTTGATAT---------------GAACTTCA-----CATTGCTTCACATTACCAA 480 ** * * ** *** *** * ** * **** * consensus_9630#0 CATAATTCAACACGAATTCGTCAACAAGAAATTCCAACAT-TATTTCGTGGTTTGTAATA 711 consensus_9630#1 CATAATA-GACCTGAACACG--GACAATATGATTGCACATCTACTAAATTGATTGAAATG 537 ****** ** *** ** **** * * **** ** * * * *** *** consensus_9630#0 GTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCAT 771 consensus_9630#1 GTTT---ACAATTTCAAGC----AATCTGTG----------------------------- 561 ** * * *** * * ***** * consensus_9630#0 GATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCT 831 consensus_9630#1 ------------------------------------------------------------ consensus_9630#0 AACACATACCAGTGCATTCTAGATAATACAGAGTCTATGTGTAATACACTGTTGGACAGA 891 consensus_9630#1 ------------------------------------------------------------ consensus_9630#0 CGGAAGATGATCTTAAGTAGACGTACAATCGATTACAGACACCTAAACTCGAATCCAAGC 951 consensus_9630#1 ------------------------------------------------------------ consensus_9630#0 TGTGACGGATGTGGTGTTTATAAGAACCAATGATTCTTCAGTATTGATGGCTGTTTTTAA 1011 consensus_9630#1 ------------------------------------------------------------ consensus_9630#0 CTCGAATGGCAAATACAGTACAATCGTTCCTGCTCATCTAATACTTCTTGATGAAATTGC 1071 consensus_9630#1 ------------------------------------------------------------ consensus_9630#0 GTTATTGCTGGTATTGATAGTTTATACTTCAATCAAATACTTCAATTATCATAATCCGCA 1131 consensus_9630#1 ------------------------------------------------------------ consensus_9630#0 CGTATATCTTCATAAATCAAAGTAATCTTACC 1163 consensus_9630#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||