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Schistosoma mansoni
cluster # 9633 cluster # 9633       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9633#0 length = 914 sequences # 9  
consensus_9633#1 length = 549 sequences # 1  

consensusID : consensus_9633#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 914
fasta sequence
                              [NAGCCAAGAATGGGCACGACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCAAAATCAAAACAACGTGTTATTGAATGGTTAAAACATCAAGAATCGTATATGTCACAATTTATTATGTGAATAATGAAAATATTATTGATTATTAATTTGTTAGTAGTATATTTTATTCTTTAGAAAATTACTTCCCCTATTGTACAGAATTTATATAATTAAATAAATAGATGATATTATAATGATATTCTTAATATTTGGGAAATCAATAAAGTTTGGACACTTCAGAAGTTTGGATCGTTACGTTACAAACGCCTGTTACTCTCA]

[+] EMBL CD081431             [NAGCCAAGAATGGGCACGAGGTCGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCANAATCAAAACAACGTGTTATTGAATGGTTAAAACATCAAGAATCGTATATGTCACAA                                                                                                                                                                                                                  ]
[+] EMBL CD133099             [                 aACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGGTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGGAGCAGCGGGAGAAT                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD133112             [                  ACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAGAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGCGATACAGAAAAGGAAGAAGAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD189822             [                  ACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD078313             [                                          ATTACGCTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGNAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCAAAATC AAACCACGTGTT                                                                                                                                                                                                                                                         ]
[+] EMBL CD078235             [                                          ATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATANAGTANAATGGAAATCTCCTATGGAAATATCAAAATCAA                                                                                                                                                                                                                                                                    ]
[-] EMBL CD072872             [                                                                                                                                                                                                                                                                                                                                         GAAGAAGAGGGAGAGGANCGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCAAAATCAAAACAACGTGTTATTGAATGGTTAAAACATCAAGAATCGTATATGTCACAATTTATTATGTGAATAATGAAAATATTATTGATTATTAATTTGTTAGTAGTATATTTTATTCTTTAGAAAATTACTTCCCCTATTGTACAGAATTTATATAATTAAATAAATAGA                                                                                                ]
[-] EMBL CD084454             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCAAAATCAAAACAACGTGTTATTGAATGGTTAAAACATCAAGAATCGTATATGTCACAATTTATTATGTGAATAATGAAGATATTATTGATTATTAATTTGTTAGTAGTATATTTTGTTCTTTAGAAAATTACTTCCCCTATTGTACAGAATTTATATAATTAAATAAATAGATGATATTATAATGATATTCTTAATATTTGGGAAATCAATAAAGTTTGGACACTTCAGAAGTTTGGATCGTTACGTTACAAACGCCTGTTACTCTCA]
[-] EMBL CD075258             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CATAAAGTAAAATGGGAATTTCCTATGGAAATATCAAAATCAAAACCACGTGTTATTGAATGGTTTAAACATCAAGAATTGGATATGTCCCCATTTATTATGTGAATAATGAAAAAATTATTGATTATTAATTTGTTAGTAGGATATTTTATTTTTTAGAAAATTACTTCCCCTATTGGACAGAATTTATATAATTTAATAAATAGATGAT                                                                                            ]


>consensus_9633#0 NAGCCAAGAATGGGCACGACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTA CAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATA ATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAG GGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATG TTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTG GCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAA GTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTT CATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAA ACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGA ACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTA AAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCAAAATCAAAACAAC GTGTTATTGAATGGTTAAAACATCAAGAATCGTATATGTCACAATTTATTATGTGAATAA TGAAAATATTATTGATTATTAATTTGTTAGTAGTATATTTTATTCTTTAGAAAATTACTT CCCCTATTGTACAGAATTTATATAATTAAATAAATAGATGATATTATAATGATATTCTTA ATATTTGGGAAATCAATAAAGTTTGGACACTTCAGAAGTTTGGATCGTTACGTTACAAAC GCCTGTTACTCTCA



consensusID : consensus_9633#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence
                              [CTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGTAAGATTTACTTTAAGTTTTCAAATAAAAGTTTTGATTGTAGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTA]

[-] EMBL CD133434             [CTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGTAAGATTTACTTTAAGTTTTCAAATAAAAGTTTTGATTGTAGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTA]


>consensus_9633#1 CTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCC CTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTG TGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATT ACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATC TATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGA AAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAA TTCCAAAATGGTAAGATTTACTTTAAGTTTTCAAATAAAAGTTTTGATTGTAGGATTTCA ATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAA GGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAA TCAGTCCTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9633#0      NAGCCAAGAATGGGCACGACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTA 60
consensus_9633#1      -------------------CTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTA 41
                                         *****************************************

consensus_9633#0      CAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATA 120
consensus_9633#1      CAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATA 101
                      ************************************************************

consensus_9633#0      ATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAG 180
consensus_9633#1      ATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAG 161
                      ************************************************************

consensus_9633#0      GGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATG 240
consensus_9633#1      GGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATG 221
                      ************************************************************

consensus_9633#0      TTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTG 300
consensus_9633#1      TTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTG 281
                      ************************************************************

consensus_9633#0      GCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAA 360
consensus_9633#1      GCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAA 341
                      ************************************************************

consensus_9633#0      GTCCATTATTTAATGAAAATTCCAAAATGG------------------------------ 390
consensus_9633#1      GTCCATTATTTAATGAAAATTCCAAAATGGTAAGATTTACTTTAAGTTTTCAAATAAAAG 401
                      ******************************                              

consensus_9633#0      -------------ATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTA 437
consensus_9633#1      TTTTGATTGTAGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTA 461
                                   ***********************************************

consensus_9633#0      TCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAAT 497
consensus_9633#1      TCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAAT 521
                      ************************************************************

consensus_9633#0      AGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACA 557
consensus_9633#1      AGCAGTAGCAGCGGTAGAATCAGTCCTA-------------------------------- 549
                      ****************************                                

consensus_9633#0      ATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAA 617
consensus_9633#1      ------------------------------------------------------------
                                                                                  

consensus_9633#0      GTAAAATGGAAATCTCCTATGGAAATATCAAAATCAAAACAACGTGTTATTGAATGGTTA 677
consensus_9633#1      ------------------------------------------------------------
                                                                                  

consensus_9633#0      AAACATCAAGAATCGTATATGTCACAATTTATTATGTGAATAATGAAAATATTATTGATT 737
consensus_9633#1      ------------------------------------------------------------
                                                                                  

consensus_9633#0      ATTAATTTGTTAGTAGTATATTTTATTCTTTAGAAAATTACTTCCCCTATTGTACAGAAT 797
consensus_9633#1      ------------------------------------------------------------
                                                                                  

consensus_9633#0      TTATATAATTAAATAAATAGATGATATTATAATGATATTCTTAATATTTGGGAAATCAAT 857
consensus_9633#1      ------------------------------------------------------------
                                                                                  

consensus_9633#0      AAAGTTTGGACACTTCAGAAGTTTGGATCGTTACGTTACAAACGCCTGTTACTCTCA 914
consensus_9633#1      ---------------------------------------------------------
                                                                               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)