These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9633#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 914 fasta sequence [NAGCCAAGAATGGGCACGACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCAAAATCAAAACAACGTGTTATTGAATGGTTAAAACATCAAGAATCGTATATGTCACAATTTATTATGTGAATAATGAAAATATTATTGATTATTAATTTGTTAGTAGTATATTTTATTCTTTAGAAAATTACTTCCCCTATTGTACAGAATTTATATAATTAAATAAATAGATGATATTATAATGATATTCTTAATATTTGGGAAATCAATAAAGTTTGGACACTTCAGAAGTTTGGATCGTTACGTTACAAACGCCTGTTACTCTCA] [+] EMBL CD081431 [NAGCCAAGAATGGGCACGAGGTCGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCANAATCAAAACAACGTGTTATTGAATGGTTAAAACATCAAGAATCGTATATGTCACAA ] [+] EMBL CD133099 [ aACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGGTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGGAGCAGCGGGAGAAT ] [+] EMBL CD133112 [ ACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAGAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGCGATACAGAAAAGGAAGAAGAAGA ] [+] EMBL CD189822 [ ACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAA ] [+] EMBL CD078313 [ ATTACGCTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGNAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCAAAATC AAACCACGTGTT ] [+] EMBL CD078235 [ ATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATANAGTANAATGGAAATCTCCTATGGAAATATCAAAATCAA ] [-] EMBL CD072872 [ GAAGAAGAGGGAGAGGANCGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCAAAATCAAAACAACGTGTTATTGAATGGTTAAAACATCAAGAATCGTATATGTCACAATTTATTATGTGAATAATGAAAATATTATTGATTATTAATTTGTTAGTAGTATATTTTATTCTTTAGAAAATTACTTCCCCTATTGTACAGAATTTATATAATTAAATAAATAGA ] [-] EMBL CD084454 [ TAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCAAAATCAAAACAACGTGTTATTGAATGGTTAAAACATCAAGAATCGTATATGTCACAATTTATTATGTGAATAATGAAGATATTATTGATTATTAATTTGTTAGTAGTATATTTTGTTCTTTAGAAAATTACTTCCCCTATTGTACAGAATTTATATAATTAAATAAATAGATGATATTATAATGATATTCTTAATATTTGGGAAATCAATAAAGTTTGGACACTTCAGAAGTTTGGATCGTTACGTTACAAACGCCTGTTACTCTCA] [-] EMBL CD075258 [ CATAAAGTAAAATGGGAATTTCCTATGGAAATATCAAAATCAAAACCACGTGTTATTGAATGGTTTAAACATCAAGAATTGGATATGTCCCCATTTATTATGTGAATAATGAAAAAATTATTGATTATTAATTTGTTAGTAGGATATTTTATTTTTTAGAAAATTACTTCCCCTATTGGACAGAATTTATATAATTTAATAAATAGATGAT ] consensusID : consensus_9633#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [CTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGTAAGATTTACTTTAAGTTTTCAAATAAAAGTTTTGATTGTAGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTA] [-] EMBL CD133434 [CTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGTAAGATTTACTTTAAGTTTTCAAATAAAAGTTTTGATTGTAGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9633#0 NAGCCAAGAATGGGCACGACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTA 60 consensus_9633#1 -------------------CTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTA 41 ***************************************** consensus_9633#0 CAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATA 120 consensus_9633#1 CAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATA 101 ************************************************************ consensus_9633#0 ATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAG 180 consensus_9633#1 ATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAG 161 ************************************************************ consensus_9633#0 GGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATG 240 consensus_9633#1 GGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATG 221 ************************************************************ consensus_9633#0 TTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTG 300 consensus_9633#1 TTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTG 281 ************************************************************ consensus_9633#0 GCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAA 360 consensus_9633#1 GCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAA 341 ************************************************************ consensus_9633#0 GTCCATTATTTAATGAAAATTCCAAAATGG------------------------------ 390 consensus_9633#1 GTCCATTATTTAATGAAAATTCCAAAATGGTAAGATTTACTTTAAGTTTTCAAATAAAAG 401 ****************************** consensus_9633#0 -------------ATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTA 437 consensus_9633#1 TTTTGATTGTAGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTA 461 *********************************************** consensus_9633#0 TCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAAT 497 consensus_9633#1 TCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAAT 521 ************************************************************ consensus_9633#0 AGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACA 557 consensus_9633#1 AGCAGTAGCAGCGGTAGAATCAGTCCTA-------------------------------- 549 **************************** consensus_9633#0 ATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAA 617 consensus_9633#1 ------------------------------------------------------------ consensus_9633#0 GTAAAATGGAAATCTCCTATGGAAATATCAAAATCAAAACAACGTGTTATTGAATGGTTA 677 consensus_9633#1 ------------------------------------------------------------ consensus_9633#0 AAACATCAAGAATCGTATATGTCACAATTTATTATGTGAATAATGAAAATATTATTGATT 737 consensus_9633#1 ------------------------------------------------------------ consensus_9633#0 ATTAATTTGTTAGTAGTATATTTTATTCTTTAGAAAATTACTTCCCCTATTGTACAGAAT 797 consensus_9633#1 ------------------------------------------------------------ consensus_9633#0 TTATATAATTAAATAAATAGATGATATTATAATGATATTCTTAATATTTGGGAAATCAAT 857 consensus_9633#1 ------------------------------------------------------------ consensus_9633#0 AAAGTTTGGACACTTCAGAAGTTTGGATCGTTACGTTACAAACGCCTGTTACTCTCA 914 consensus_9633#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||