These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 978 fasta sequence [TCTATTCGTTTTAGGGTTTTCGTGTAGCATCAACTCCATATTTTAAAAATTCAAATAGTTGTCTTGTTAAGTGAGCAGCATTCGGATCTACAAGATAGTCTTGAAGTCTAGCCAATAGAATACATGCAAACTTCAGTTTTTCAAAGAAATCAACAGCACATTTTTTCACAGGTTCATCCACCTCAGTGGTTAAAGAAGATGTTTGATTCACATTAACACTTGAAATTCGACTTTTTGATTTACTCGATGTAGCAACAGATGCTGATGATTTAGTGAACTGTCGACTTGTTCTGCTTTTTAAAATTTTGTAATTTGATTCAATGTCATCAAAGCAGAGATTTAGAAGTGCAACTTCTAAGTCAATCCATTCACGATTGATTTGTGATTCACTATATACACTGTCCTCTTTGATAACCGTTGGTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCTTAGATTTGGTTCAGATGGAGCCCTGGAGATTAGCATGGAATCATTTACATCTTGATTATATGAATCATGGTCTAGAGCTCCAGCTCTCAATAAAAGATTGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGAAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTATTTCCATTCATTTTCTTAT] [-] EMBL CD196455 [TCTATTCGTTTTAGGGTTTTCGTGTAGCATCAACTCCATATTTTAAAAATTCAAATAGTTGTCTTGTTAAGTGAGCAGCATTCGGATCTACAAGATAGTCTTGAAGTCTAGCCAATAGAATACATGCAAACTTCAGTTTTTCAAAGAAATCAACAGCACATTTTTTCACAGGTTCATCCACCTCAGTGGTTAAAGAAGATGTTTGATTCACATTAACACTTGAAATTCGACTTTTTGATTTACTCGATGTAGCAACAGATGCTGATGATTTAGTGAACTGTCGACTTGTTCTGCTTTTTAAAATTTTGTAATTTGATTCAATGTCATCAAAGCAGAGATTTAGAAGTGCAACTTCTAAGTCAATCCATTCACGATTGATTTGTGATTCACTATA ] [+] EMBL CD168937 [ ATTCACATTAACACTTGAAATTCGACTTTTTGATTTACTCGATGTAGCAACAGATGCTGATGATTTAGTGAACTGTCGACTTGTTCTGCTTTTTAAAATTTTGTAATTTGATTCAATGTCATCAAAGCAGAGATTTAGAAGTGCAACTTCTAAGTCAATCCATTCACGATTGATTTGTGATTCACTATATACACTGTCCTCTTTGATAACCGTTGGTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCTTAGATTTGGTTCAGATGGAGCCCTGGAGATTAGCATGGAATCATTTACATCTTGATTATATGAATCATGGTCTAGAGCTCCAGCTCTCAATAAAAGATTGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGAAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGAGATATGGTTCACCATCAT ] [-] EMBL BF936068 [ CTTGTTTGCAACGGTATCCTTAGATTTGGTTCAGATGGAGCCCTGGAGATTAGCATGGAATCATTTACATCTTGATTATATGAATCATGGTCTAGAGCTCCAGCTCTCAATAAAAGATTGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGAAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTATTTCCA ] [-] EMBL AI975477 [ AATCATGGTCTAGAGCTCCAGCTCTCAATAAAAGATTGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGAAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTATTTCCA ] [-] EMBL AA958289 [ CAATAAAAGA TGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGAAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTATTTCCATTCATTTTCTTAT] [-] EMBL AA958306 [ CAATAAAAGA TGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGAAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTATTTCCATTCATTTTCTTAT] [-] EMBL AA958286 [ AATAAAAGATTGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGGAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTATTTCCATTCATTTTCTTAT] [-] EMBL AA960679 [ TCACTTAGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTATTTCCATTCATTTTCTTAT] consensusID : consensus_9643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 389 fasta sequence [TAACTCGACACTTCAGTGGCTATTCATATCTCTATAGTATTTTAATATTGATCAAAGGTGGATATGGTCTGTTTCTTTATCAAGTTAATAAAGATACCAGTGAATCTGATGATGAAAAGCACAAAAGTATTTTGAGATGATGAAGAATATTTGTAGCTAGAAATTGGTTCTCCAATTTTGCACAACATTATTATTTAATATACTTAATTAAATTGATGAACTTAGTAAGACATCAGTAAAATATAATTAGTAAAATATGGGAATAATTGTTACCAACAACTTTTTAACTAGTTGTCTTACTGATTTGTGATTCACTATATACACTGTCCTCTTTGATAACCGTTGGTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCTT] [+] EMBL CD159693 [TAACTCGACACTTCAGTGGCTATTCATATCTCTATAGTATTTTAATATTGATCAAAGGTGGATATGGTCTGTTTCTTTATCAAGTTAATAAAGATACCAGTGAATCTGATGATGAAAAGCACAAAAGTATTTTGAGATGATGAAGAATATTTGTAGCTAGAAATTGGTTCTCCAATTTTGCACAACATTATTATTTAATATACTTAATTAAATTGATGAACTTAGTAAGACATCAGTAAAATATAATTAGTAAAATATGGGAATAATTGTTACCAACAACTTTTTAACTAGTTGTCTTACTGATTTGTGATTCACTATATACACTGTCCTCTTTGATAACCGTTGGTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCT ] [-] EMBL CD159562 [ gaCTATTCATATCTCTATAGTATTTTAATATTGATCAAAGGTGGATATGGTCTGTTTCTTTATCAAGTTAATAAAGATACCAGTGAATCTGATGATGAAAAGCACAAAAGTATTTTGAGATGATGAAGAATATTTGTAGCTAGAAATTGGTTCTCCAATTTTGCACAACATTATTATTTAATATACTTAATTAAATTGATGAACTTAGTAAGACATCAGTAAAATATAATTAGTAAAATATGGGAATAATTGTTACCAACAACTTTTTAACTAGTTGTCTTACTGATTTGTGATTCACTATATACACTGTCCTCTTTGATAACCGTTGGTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9643#0 TCTATTCGTTTTAGGGTTTTCGTGTAGCATCAACTCCATATTTTAAAAATTCAAATAGTT 60 consensus_9643#1 -----------------------------------------------------------T 1 * consensus_9643#0 GTCTTGTTAAGTGAGCAGC-ATTCGGATCTACAAGATAGTCTTGAAGTCTAGCCAATAGA 119 consensus_9643#1 AACTCGACACTTCAGTGGCTATTCATATCTCTATAGTATTTT--AATATTGATCAAAGGT 59 ** * * * ** ** **** **** * ** * * ** * *** * consensus_9643#0 ATACATGCAAACTTCAGTTTTTCAAAGAAATCAACAGCACATTTTTTCACAGGTTCATC- 178 consensus_9643#1 GGATATG-GTCTGTTTCTTTATCAAGTTAATAAAGATACCAGTGAATCTGATGATGAAAA 118 * *** * *** **** *** ** * ** * ** * * * * consensus_9643#0 -CACCTCAGTGGTTAAAGAAGATGTTTGATTCACATTAACACTTGAAATTCGACTTTTTG 237 consensus_9643#1 GCACAAAAGTATTTTGAGATGAT----GAAGAATATTTGTAGCTAGAAATTGGTTCTCCA 174 *** *** ** *** *** ** * *** * * ** * * * * consensus_9643#0 ATTTACTCGATGTAGCAACAGATGCTGATGATTTAGTGAACT--GTCGACTTGTTCTGCT 295 consensus_9643#1 ATTT------TGCA-CAACA-----TTATTATTTAATATACTTAATTAAATTGATGAACT 222 **** ** * ***** * ** ***** * *** * * *** * ** consensus_9643#0 TTTTAAAATTTT-GTAATTTG-ATTCAATGTCATCAAAGCAGAGATTTAGAAGTGCAACT 353 consensus_9643#1 TAGTAAGACATCAGTAAAATATAATTAGTAAAAT-ATGGGAATAATTGTTACCAACAACT 281 * *** * * **** * * * * * ** * * * *** * ***** consensus_9643#0 TCTAAGTCAATCCATTCACGATTGATTTGTGATTCACTATATACACTGTCCTCTTTGATA 413 consensus_9643#1 TTTTAACTAGTTGTCTTAC---TGATTTGTGATTCACTATATACACTGTCCTCTTTGATA 338 * * * * * * ** ************************************** consensus_9643#0 ACCGTTGGTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCTTAGATTTGGT 473 consensus_9643#1 ACCGTTGGTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCTT--------- 389 *************************************************** consensus_9643#0 TCAGATGGAGCCCTGGAGATTAGCATGGAATCATTTACATCTTGATTATATGAATCATGG 533 consensus_9643#1 ------------------------------------------------------------ consensus_9643#0 TCTAGAGCTCCAGCTCTCAATAAAAGATTGACAAGTGTTTGAGCAGGACAAGTTAAAACT 593 consensus_9643#1 ------------------------------------------------------------ consensus_9643#0 TGAAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATA 653 consensus_9643#1 ------------------------------------------------------------ consensus_9643#0 GTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGA 713 consensus_9643#1 ------------------------------------------------------------ consensus_9643#0 TAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTT 773 consensus_9643#1 ------------------------------------------------------------ consensus_9643#0 AGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATAT 833 consensus_9643#1 ------------------------------------------------------------ consensus_9643#0 GTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTA 893 consensus_9643#1 ------------------------------------------------------------ consensus_9643#0 GGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTG 953 consensus_9643#1 ------------------------------------------------------------ consensus_9643#0 TTTCTATTTCCATTCATTTTCTTAT 978 consensus_9643#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||