These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9645#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1088 fasta sequence [CTGTAATAACGATATTTATTACTGTTTTCTACTCAACTTATTATCGTGAAGAATTATCAAATATCTTTGTTTTCGTAAAAATGTGCTGAGAAAATGAGGTGTTATATGTAAATATTACAGAAGTATTTCATAGAACAAACAACAACGATGCCATTGAAATGAAAGGAATCAGTGTTTTTACATATCGTGCATTTATAAGAGAATGGTGCGCCAAAATGTAAACAAACTGGGATCCACACAAACTATTTCGATCTTCATATGTGGAAATTTCCTCACCATCTGGATTCCTTCCCATGAATCGATATTCAAATCTAACTGACACGTCTGATATTCACATTTATTATTCAAAAGTGCATATGTACATCCATCCAAGATTCGATTGATTATCATAAAATCAAGGAAATTAAACCAATTCATTTTTTTGTCTGATCAAAACCACTTTTATTAATCACTTCAATCTTTAGTTTTTCATATAACTTACGACGTTTCTCCATAACTTTATCATGTTCGTCGTTACCAATTGAATTACAATCTCTATTATTAGTATATACAATACTCTTATCTGTTAAAGTTTGTACATGATCAGAAAATAGCTTTTCACGTTTTTTCTGACGCATTTCAATCAGTAGATCACGTTGTTTTCGTAGAATGATTGTTTTTCATTAATTCACCTTCAGTTGGTCTTACAGTATTGTCATATTTTTGCTGATGAATAGTTTCAGAGTTATTGAGATTTATATGTGATTCATGATGATGATGATGTCCAGTATCAGAAGACTGGTTNTATTTATGAGGAATTTTAGGNTATGAGACTTTTGTAGGCTATCACGAGAGCATAAATCATCTCATTATACGTCATATNCTCTACGTGACTTACAAGTACTTGATGNNTGCTGATGCTACANCATTGTCGTGAATTTCACGCATAGTAGTATTTATATTGGTGATTATCGATCTTAATGTGTCAACTGTATGTACACTTGGATAGAGTCAGAAATACAGTCTGCATTGCAGCAACTNGAGTAANAGTATTCTGAGTCCACCAANCGAAGACGCTAGACATTGCCCCTCAAGCGTAACAGGGGGCT] [+] EMBL CD073681 [CTGTAATAACGATATTTATTACTGTTTTCTACTCAACTTATTATCGTGAAGAATTATCAAATATCTTTGTTTTCGTAAAAATGTGCTGAGAAAATGAGGTGTTATATGTAAATATTACAGAAGTATTTCATAGAACAAACAACAACGATGCCATTGAAATGAAAGGAATCAGTGTTTTTACATATCGTGCATTTATAAGAGAATGGTGCGCCAAAATGTAAACAAACTGGGATCCACACAAACTATTTCGATCTTCATATGTGGAAATTTCCTCACCATCTGGATTCCTTCCCATGAATCGATATTCAAATCTAACTGACACGTCTGATATTCACATTTATTATTCAAAAGTGCATATGTACATCCATCCAAGATTCGATTGATTATCATAAAATCAAGGAAATTAAACCAATTCATTTTTTTGTCTGATCAAAACCACTTTTATTAATCACTTCAATCTTTAGTTTTTCATATAACTTACGACGTTTCTCCATAACTTTATCATGTTCGTCGTTACCAATTGAATTACAATCTCTATTATTAGTATATACAATACTCTTATCTGTTAAAGTTTGTACATGATCAGAAAATAGCTTTTCACGTTTTTTCTGACGCATTTCAATCAGTAGATCACGTTGTTTTCGTAGAATGATTGTTTTTCATTAATTCACCTTCAGTTGGTCTTACAGTATTGTCATATTTTTGCTGATGAATAGTTTCAGAGTTATTGAGATTTATATGTGATTCATGATGATGATGATGTCCAGTATCAGAAGACTGGTTNTATTTATGAGGAATTTTAGGNTATGAGACTTTTGTAGGCTATCACGAGAGCATAAATCATCTCATTATACGTCATATNCTCTACGTGACTTACAAGTACTTGATGNNTGCTGATGCTACANCATTGTCGTGAATTTCACGCATAGTAGTATTTATATTGGTGATTATCGATCTTAATGTGTCAACTGTATGTACACTTGGATAGAGTCAGAAATACAGTCTGCATTGCAGCAACTNGAGTAANAGTATTCTGAGTCCACCAANCGAAGACGCTAGACATTGCCCCTCAAGCGTAACAGGGGGCT] consensusID : consensus_9645#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 763 fasta sequence [AGACCTGAGGGCGCTCAGTTCTTTGGCGCTACAACATAAATGTTACTTGATCTGTGTAAGGCTTCTTTGCATTTATCCATCTAATTAAACTATAAAAAGGAATGAATACCAAGGGATTGGAGAATTTTTTTAACGATCCTATGGTTTCAGCTCATATTGAATCGTTCATGGATGCTCATTGTTCTAGTAATTATAAAACTTGATCAAATACGCTTTTAACATTAAAATAATAACAGTATTCACATGTGAAAAAGAAATTTATTCTGAACATTATTTAACACACAAAGAATTTTCAGAAATGATGAAAAGTCTGCTAAATAGTTCATCAATCCATTACAATCAAATTCAAGAAATATATACCACTTATAAAATAACTGAAGATGACCCTTGTTTTAGTTCAATCTCTTATATAATTGCATCATGGAATTTTGAATTATTTTATCAATTAATGACTTTGGTTAATGTTGATTTACAATTGGAAGCATTACATTATATTCAACAGAAGTATGGTAATCAATTTATACAGATGTATTCGAACAACAATGATAATGATTCTGTGGATAATATTTCAACGCAAATAAATAAAAATGAACTAACTGATATGCTGTTGGAAAAATCTCAACAGAAAAATGGAATGGTGAAGACAATCAAGCAAACAATTCAAAGTGAACTTTGTAAAAGTCAACGTANAGAGAATGATGGACAGTTATTAATGGAGATCTTCATCAATTGTTGGTGTGTATGAGATAGAAGAGCTAGGTCA] [+] EMBL CD161882 [AGACCTGAGGGCGCTCAGTTCTTTGGCGCTACAACATAAATGTTACTTGATCTGTGTAAGGCTTCTTTGCATTTATCCATCTAATTAAACTATAAAAAGGAATGAATACCAAGGGATTGGAGAATTTTTTTAACGATCCTATGGTTTCAGCTCATATTGAATCGTTCATGGATGCTCATTGTTCTAGTAATTATAAAACTTGATCAAATACCCTCTTAACATTAAAATAATAACAGTATTCACATGTGAAAAAGAAATTTATTCTGAACATTATTTAACACACAAAGAATTTTCAGAAATGATGAAAAGTCTGCTAAATAGTTCATCAATCCATTACAATCAAATTCAAGAAATATATACCACTTATAAAATAACTGAAGATGACCCTTGTTTTAGTTCAATCTCTTATATAATTGCATCATGGAATTTTGAATTATTTTATCAATTAATGACTTTGGTTAATGTTGATTTACAATTGGAAGCATTACATTATATTCAACAGAAGTATGGTAATCAATTTATACAGATGTATTCGAACAACAATGATAATGATTCTGTGGATAATATTTCAACGCAAATAAATAAAAATGAACTAACTGATATGCTGTTGGAAAAATCTCAACAGAAAAATGGAATGGTGAAGACAATCAAGCAAACAATTCAAAGTGAACTTTG ] [+] EMBL CD161928 [ GATGGCGCTCACTTCTTTGGCGCTACAACATAAATGTTACTTGATCTGTGTCAGGCTTCTTTGCATTTATCCATCTAATTAAACTATAAAAAGGAATGAATACCAAGGGATTGGAGAATTTTTTTAACGATCCTATGGTTTCAGCTCATATTGAATCGCACATGGATGCTCATTGTTC ] [+] EMBL CD161934 [ GTTCTTTGGCGCTACAACATAAATGTTACTTGATCTGTGTAAGGCTTCTTTGCATTTATCCATCTAATTAAACTAT AAAAGGAATGAATACCAAGGGATCGAAGAATTTTTTT ACGATCCTATGGGTTCAGCTCATATTGAATCGTTCATGGATGCTCATTGTTCTAGTAATTATAAAACTTGATCAAATACGCTTTTAACATTAAAATAATAACAGTATTCACATGTGAAAAAGAAATTTATTCTGAACATTATTTAACACACAAAGAATTTTCAGAAATGATGA ] [+] EMBL CD161795 [ TTCTTTGGCGCTACAACATAAATGTTACTTGATCTGTGTAAGGCTTCTTTGCATTTATCCATGTAATTAAACTATAAAAAGGAATGAATACCAAGGGATTGGAGAATTTTTTTAACGATCCTATGGTTTCAGCTCATATTGAATCGTTCAT GATGCTCATTGTTCTAGTAATTATAAAACTTGATCAAATACGCTTTTAACATTAAAATAATAACAGTATTCACATGTGAAAAAGAAATTTATTCTGAACATTATTTAACACACAAAGAATTTTCAGAAATGATGAAAAGTCTGCTAAATAGTTCATCAATCCATTACAATCAAATTCAAGAAATATATACCACTCATAAAATAACTGAAGATGACCCT ] [+] EMBL CD161810 [ TTCTTTGGCGCTACAACATAAATGTTACTTGATCTGTGTAAGGCTTCTTTGCATTTATCCATCTAATTAAACTATAAAAAGGAATGAATACCAAGGGATTGGAGAATTTTTTTAACGATCCTATGGTTTCAGCTCATATTGAATCGTTCATGGATGCTCATTGTTCTAGTAATTATAAAACTTGATCAAATACGCTTTTAACATTAAAATAATAACAGTATTCACATGTGAAAAAGAAATTTATTCTGAACATTATTTAACACACAAAGAATTTTCAGAAATGATGAAAAGTCTGCTAAATAGTTCATCAATCCATTACAATCAAATTCAAGAAATATATACCACTTATAAAATAACTGAAGATGACCCTTt ] [+] EMBL CD154160 [ ATGCTCATTGTTCTAGTAATTATAAAACTTGATCAAATACGCTTTTAACATTAAAATAATAACAGTATTCACATGTGAAAAAGAAATTTATTCTGAACATTATTTAACACACAAAGAATTTTCAGAAATGATGAAAAGTCTGCTAAACAGTTCATCAATCCATTACAATCAAATTCAAGAAATATATACCACTTATAAAATAACTGAAGATGACCCTTGTTTTAGTTCAATCTCTTATATAATTGCATCATGGAATTTTGAATTATTTTATCAATTAATGACTTTGGTTAATGTTGATTTACAATTGGAAGCATTACATTATATTCAACAGAAGTATGGTAATCAATTTATACAGATGTATTCGAACAACAATGATAATGATTCTGTGGATAATATTTCAACGCAAATAAATAAAAATGAACTAACTGATATGCTGTTGGAAAAATCTCGACAGAAAAATGGAATGGTGAAGACAATCAAGCAAACAATTCANAGTGAACTTTGTAAAAGTCAACGTANAGAGAATGATGGACAGTTATTAATGGAGATCTTCATCAATTGTTGGTGTGTATGAGATAGAAGAGCTAGGTCA] [+] EMBL CD179751 [ cTATGTACCACTTATAAAATAACTGAAAATGACCCTTGTTTTAATTCAATCTGTTATATAATTGCATCATGGAATTTTGAATTATTTTATCAATTAATGACTTTGGTTAATGTTGATTTACAATTGGAAGCATTACATTATATTCAACgg ] consensusID : consensus_9645#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 680 fasta sequence [ACTTCAATCTTTAGTTNTTCATATAACTTACGACGTTTCTCCATAACTTTATCATGTTCGTCGTTACCAATTGAATTACAATCTCTATTATTAGTATATACAATACTCTTATCTGTTAAAGTTTGTACATGATCAGAAAATAGCTTTTCACGTTTTTTCTGACGCATTTCAATCAGTAGATCACGTTGTTTTCGTAGAAATGATTGTTTTTCAATTAATTCACCTTCAGTTGGTCTTACAGTATTGTCATATTTTTGCTGATGAATAGTTTCAGAGTTATTGAGATTTAATATGTGATTCCATGATGATGATGATGTCACAGTATCAGAAGAACTTGGTTTTATTTTATGAGGAATTTTAGGGTTAATGAGACTTTTTGTAGGTATATCACGAGAAGCATTAGAATCAATCTCCATTAATAACTGTCCATCATTCTCTTTACGTTGACTTTTACAAAGTTCACTTTGAATTGTTTGCTTGATTGTCTTCACCATTCCATTTTTCTGTTGAGATTTTTCCAACAGCATATCAGTTAGTTCATTTTTATTTATTTGCGTTGAAATATTATCCACAGAATCATTATCATTGTTGTTCGAATACATCTGTATAAATTGATTACCATACTTCTGTTGAATATAATGTAATGCTTCCAATTGTAAATCAACATTAACCAAAGTCAT] [-] EMBL CD079408 [ACTTCAATCTTTAGTTNTTCATATAACTTACGACGTTTCTCCATAACTTTATCATGTTCGTCGTTACCAATTGAATTACAATCTCTATTATTAGTATATACAATACTCTTATCTGTTAAAGTTTGTACATGATCAGAAAATAGCTTTTCACGTTTTTTCTGACGCATTTCAATCAGTAGATCACGTTGTTTTCGTAGAAATGATTGTTTTTCAATTAATTCACCTTCAGTTGGTCTTACAGTATTGTCATATTTTTGCTGATGAATAGTTTCAGAGTTATTGAGATTTAATATGTGATTCCATGATGATGATGATGTCACAGTATCAGAAGAACTTGGTTTTATTTTATGAGGAATTTTAGGGTTAATGAGACTTTTTGTAGGTATATCACGAGAAGCATTAGAATCAATCTCCATTAATAACTGTCCATCATTCTCTTTACGTTGACTTTTACAAAGTTCACTTTGAATTGTTTGCTTGATTGTCTTCACCATTCCATTTTTCTGTTGAGATTTTTCCAACAGCATATCAGTTAGTTCATTTTTATTTATTTGCGTTGAAATATTATCCACAGAATCATTATCATTGTTGTTCGAATACATCTGTATAAATTGATTACCATACTTCTGTTGAATATAATGTAATGCTTCCAATTGTAAATCAACATTAACCAAAGTCAT] [+] EMBL CD159805 [ CAGTATTGTCATATTTTTGCTGATGAATAGTTTCAGAGTTATTGAGATTTAATATGTGATTCCATGATGATGATGATGTCACAGTATCAGAAGAACTTGGTTTTATTTTATGAGGAATTTTAGGGTTAATGAGACTTTTTGTAGGTATATCACGAGAAGCATTAGAATCAATCTCCATTAATAACTGTCCATCAATCTCTTTACGTTGACTTTTACAAAGTTCACTTTGAATTGTTTGCTTGATTGTCTTCACCATTCCATTTTTCTGTTGAGATTTTTCCAACAGCATATCAGTTAGTTCATTTTTATTTATTTGCGTTGAAATATTATCCACAGAATCATTATCATTGTTGTTCGAATACATCTGTATTAATTGATTACCATACTTCTGTTGAATATCATGTGATGCTTCCCATTGTg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9645#0 CTGTAATAACGATATTTATTACTGTTTTCTACTCAACTTATTATCGTGAAGAATTATCAA 60 consensus_9645#2 ------------------------------------------------------------ consensus_9645#1 ------------------------------------------------------------ consensus_9645#0 ATATCTTTGTTTTCGTAAAAATGTGCTGAGAAAATGAGGTGTTATATGTAAATATTACAG 120 consensus_9645#2 ------------------------------------------------------------ consensus_9645#1 ------------------------------------------------------------ consensus_9645#0 AAGTATTTCATAGAACAAACAACAACGATGCCATTGAAATGAAAGGAATCAGTGTTTTTA 180 consensus_9645#2 ------------------------------------------------------------ consensus_9645#1 ------------------------------------------------------------ consensus_9645#0 CATATCGTGCATTTATAAGAGAATGGTGCGCCAAAATGTAAACAAACTGGGATCCACACA 240 consensus_9645#2 ------------------------------------------------------------ consensus_9645#1 ------------------------------------------------------------ consensus_9645#0 AACTATTTCGATCTTCATATGTGGAAATTTCCTCACCATCTGGATTCCTTCCCATGAATC 300 consensus_9645#2 ------------------------------------------------------------ consensus_9645#1 ------------------------------------------------------------ consensus_9645#0 GATATTCAAATCTAACTGACACGTCTGATATTCACATTTATTATTCAAAAGTGCATATGT 360 consensus_9645#2 ------------------------------------------------------------ consensus_9645#1 ------------------------------------------------------------ consensus_9645#0 ACATCCATCCAAGATTCGATTGATTATCATAAAATCAAGGAAATTAAACCAATTCATTTT 420 consensus_9645#2 ------------------------------------------------------------ consensus_9645#1 ---------------------------------------------------------AGA 3 consensus_9645#0 TTTGTCTGATCAAAACCACTTTTATTAATCACTTCAATCTTTAGTTTTTCATATAA---C 477 consensus_9645#2 ------------------------------ACTTCAATCTTTAGTTNTTCATATAA---C 27 consensus_9645#1 CCTGAGGGCGCTCAGTTCTTTGGCGCTACAACATAAATGTTACTTGATCTGTGTAAGGCT 63 ** * *** ** * * * *** consensus_9645#0 TTACGACGTTTCTCCAT--AACTTTATCATGTTCG----TCGTTACCAATTGAATT-ACA 530 consensus_9645#2 TTACGACGTTTCTCCAT--AACTTTATCATGTTCG----TCGTTACCAATTGAATT-ACA 80 consensus_9645#1 TCTTTGCATTTATCCATCTAATTAAACTATAAAAAGGAATGAATACCAAGGGATTGGAGA 123 * * *** ***** ** * * ** * ****** ** * * * consensus_9645#0 ATCTCTATTATTAGTATATACAATACTCTTATCTGTTAAAGTTTGTACATGATCAGAAAA 590 consensus_9645#2 ATCTCTATTATTAGTATATACAATACTCTTATCTGTTAAAGTTTGTACATGATCAGAAAA 140 consensus_9645#1 ATTTTTTTAACGATCCTATGGTTTCAGCTCATATTGAATCGTTCATGGATGCTCATTGTT 183 ** * * * * * *** * ** ** * * *** * *** *** consensus_9645#0 -TAGC--TTTTCACGTTTTTTCTGACGCATTTCAATCAGTAGA----TCACGTTGTTTTC 643 consensus_9645#2 -TAGC--TTTTCACGTTTTTTCTGACGCATTTCAATCAGTAGA----TCACGTTGTTTTC 193 consensus_9645#1 CTAGTAATTATAAAACTTGATCAAATACGCTTTTAACATTAAAATAATAACAGTATTCAC 243 *** ** * * ** ** * * ** * ** ** * * ** * ** * consensus_9645#0 GT----AGAA-TGATTGTTTTTCA---TTAATTCACCTTCAGTTGGTCTTACAGTATTGT 695 consensus_9645#2 GT----AGAAATGATTGTTTTTCAA--TTAATTCACCTTCAGTTGGTCTTACAGTATTGT 247 consensus_9645#1 ATGTGAAAAAGAAATTTATTCTGAACATTATTTAACACACAAAGAATTTTCAGAAATGAT 303 * * ** *** ** * * *** ** ** ** * ** ** * consensus_9645#0 CATATTTTTGCTGATGAATAGTTTCAGAGTT-ATTGAGATTTA-TATGTGATTC-ATGAT 752 consensus_9645#2 CATATTTTTGCTGATGAATAGTTTCAGAGTT-ATTGAGATTTAATATGTGATTCCATGAT 306 consensus_9645#1 GAAAAGTCTGCTAA---ATAGTTCATCAATCCATTACAATCAAATTCAAGAAAT-AT-AT 358 * * * **** * ****** * * *** ** * * ** ** ** consensus_9645#0 GATGATGATGTC-CAGTATCAGAAGA--CTGGTTNTATTT--ATGAGGAATTTTAGGNT- 806 consensus_9645#2 GATGATGATGTCACAGTATCAGAAGAACTTGGTTTTATTTT-ATGAGGAATTTTAGGGTT 365 consensus_9645#1 ACCACTTATAAAATAACTGAAGATGACCCTTGTTTTAGTTCAATCTCTTATATAATTGCA 418 * ** * *** ** * *** ** ** ** ** * * consensus_9645#0 --ATGAGACTTTT-GTAGGC-TATCACGAGA-GCAT--AAATCA-TCTC--------ATT 850 consensus_9645#2 A-ATGAGACTTTTTGTAGGTATATCACGAGAAGCATTAGAATCAATCTCCATTAATAACT 424 consensus_9645#1 TCATGGAATTTTGAATTATTTTATCAATTAATGACTT-TGGTTAATGTTGATTTACAATT 477 *** * *** * ***** * * * * * * * * * consensus_9645#0 ATA--CGTCATATNCTCTACGT-GACTT--ACAAG---TACTTGA---TGNNTGCT-GAT 898 consensus_9645#2 GTC--CATCATTCTCTTTACGTTGACTTTTACAAAGTTCACTTTGAATTGTTTGCTTGAT 482 consensus_9645#1 GGAAGCATTACATTATATTCAACAGAAGTATGGTAATCAATTTATACAGATGTATTCGAA 537 * * * * * * * ** * * ** consensus_9645#0 G--CTACANCATT----------GTCGTGAATTTCAC----GCATAGTAGTATTTATATT 942 consensus_9645#2 TGTCTTCACCATTCCATTTTTCTGTTGAGATTTTTCCAACAGCATATCAGTTAGTTCATT 542 consensus_9645#1 CAACAATGATAATGA----TTCTGTGGATAATATTTCAAC-GCAAATAAATAAAAATGAA 592 * * * ** * * * * * *** * * * consensus_9645#0 GGTGATTATCGAT-CTTAATGTGTCAACTGTATGTACACTTGGATAGAGTCAGAAATACA 1001 consensus_9645#2 TTTATTTATTTGC-GTTGAAATATTATCCACAGAATCATTATCATTGTTGTTCGAATACA 601 consensus_9645#1 CTAACTGATATGCTGTTGGAAAAATCTCAACAGAAA-AATGGAATGGTGAAGACAATCAA 651 * ** ** * * * * ** * *** * consensus_9645#0 GTCTGCATTGCAGCAACTNGA-GTAANAGTATTCTGAGTCCACCAANCGAAG-ACGCTAG 1059 consensus_9645#2 -TCTGTAT------AAATTGA-TTACCATACTTCT--GTTGAATATAATGTA-ATGCTTC 650 consensus_9645#1 GCAAACAATTCA--AAGTGAACTTTGTAAAAGTCAACGTANAGAGAATGATGGACAGTTA 709 * ** * * * * ** ** * * * consensus_9645#0 ACATTGCCCCTCAAGCGTAACAGGGGGCT------------------------- 1088 consensus_9645#2 CAATTGTAAATCAACATTAACCAAAGTCAT------------------------ 680 consensus_9645#1 TTAATGGAGATCTTCATCAATTGTTGGTGTGTATGAGATAGAAGAGCTAGGTCA 763 * ** ** ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||