These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1179 fasta sequence [GCGATTCAACAAATTTATTGAACACAGAAAATAATGCGGAAAAATCAACTAAGAAGAATGCGATAGCAATATAATCGGAAACAGTCATTTCGAAATATCTGCGAAAAGCAATTACATGACTTACAAGATAATCCCTCAAGAGCATCTCGTAAAAAAACAAAACATTAAAGCAACACTATTAAAAAGTCCAGAAAAGGTTATATTTAAAAAACTCCAACAAAAGACAATCGAATTTTATTTTTCTCCTAACAAAATAAAAGTTGAAAGACAAATTACTTCAATTATGACGAATTAACTTTTAATAATTTGAAGAAAGCATGATCATTTGGTTCACGTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAATGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTTTCTTTATCTGGTGCAGTAAAATTAGCAACCATTG-CTG-CTA-TAGCCAATTGACGTTCAGAGGCTAATGATGATGAGGAATGATCACGTTCATTCACCGTAGTATTATTGGAGTCCATTGATCCACGGCATCCTGGTTGTAAACCGAATACAGCTGCATGTCCATATTTACCTTCACGTGGATGCAGGTCAAGATAGAAATAACCTAACAAACTATTGGAT] [+] EMBL AI977598 [GCGATTCAACAAATTTATTGAACACAGAAAATAATGCGGAAAAATCAACTAAGAAGAATGCGATAGCAATATAATCGGAAACAGTCATTTCGAAATATCTGCGAAAAGCAATTACATGACTTACAAGATAATCCCTCAAGAGCATCTCGTAAAAAAACAAAACATTAAAGCAACACTATTAAAAAGTCCAGAAAAGGTTATATTTAAAAAACTCCAACAAAAGACAATCGAATTTTATTTTTCTCCTAACAAAATAAAAGTTGAAAGACAAATTACTTCAATTATGACGAATTAACTTTTAATAATTTGAAGAAAGCATGATCATTTGGTTCACGTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAAT ] [+] EMBL BG932272 [ GCGGAAAAATCAACTAAGAAGAATGCGATAGCAATATAATCGGAAACAGTCATTTCGAAATATCTGCGAAAAGCAATTACATGACTTACAAGATAATCCCTCAAGAGCATCTCGTAAAAAAACAAAACATTAAAGCAACACTATTAAAAAGTCCAGAAAAGGTTATATTTAAAAAACTCCAACAAAAGACAATCGAATTTTATTTTTCTCCTAACAAAATAAAAGTTGAAAGACAAATTACTTCAATTATGACGAATTAACTTTTAATAATTTGAAGAAAGCATGATCATTTGGTTCACGTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCTGGACGAAGAATTTTTTC CG TAAcagatcca ] [+] EMBL CD140718 [ atatggGATCATTTGGTTCACGTCCAAGAAAATCTCTCAACATATCTGTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAA ] [+] EMBL CD197539 [ GTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCG ] [+] EMBL CD197297 [ GTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCTGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTTACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCAT ] [+] EMBL CD143032 [ TTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAGAGTATTTGTCGAGAATAANATAGACCAGCATTTGCTATACGTGAATTAA ] [-] EMBL CD084175 [ GCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTCGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAATGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTTTCTTTATCTGGTGCAGTAAAATTAGCCACCATGGTCTGTCTACTAGCCAAgt ] [-] EMBL CD064537 [ GTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACTACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAATGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTTTCTTTATCTGGTGCAGTAAAATTAGCAACCATTG CTG CTA TAGCCAATTGACGTTCAGAGGCTAATG ] [-] EMBL BG930452 [ taaTAACAAATC GGGCGAA GGCTCATCATGTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACANAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAATGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTTTCTTTATCTGGTGCAGTAAAATTAGCAACCATTG CTG CTA TAGCCAATTGACGTTCAGAGGCTAATGATGATGAGGAATGATCACGTTCATTCACCGTAGTATTATTGGAGTCCATTGATCCACGGCATCCTGGTTGTAAACCGAATACAGCTGCATGTCCATATTTACCTTCACGTGGATGCAGGTCAAGATAGAAATAACCTAACAAACTATTGGAT] consensusID : consensus_9647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [TGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTCTTCCAACTGATCTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCGATCCATTTTTTTCT] [-] EMBL CD185451 [TGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTCTTCCAACTGATCTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCGATCCATTTTTTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9647#0 GCGATTCAACAAATTTATTGAACACAGAAAATAATGCGGAAAAATCAACTAAGAAGAATG 60 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 CGATAGCAATATAATCGGAAACAGTCATTTCGAAATATCTGCGAAAAGCAATTACATGAC 120 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 TTACAAGATAATCCCTCAAGAGCATCTCGTAAAAAAACAAAACATTAAAGCAACACTATT 180 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 AAAAAGTCCAGAAAAGGTTATATTTAAAAAACTCCAACAAAAGACAATCGAATTTTATTT 240 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 TTCTCCTAACAAAATAAAAGTTGAAAGACAAATTACTTCAATTATGACGAATTAACTTTT 300 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 AATAATTTGAAGAAAGCATGATCATTTGGTTCACGTCCAAGAAAATCTTTCAACATATCT 360 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 GTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGAT 420 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 TTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTG 480 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 AACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCA 540 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 AATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAA 600 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 TTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAAT 660 consensus_9647#1 --TGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAAT 58 ********************************************************** consensus_9647#0 GAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATT 720 consensus_9647#1 GAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATT 118 ************************************************************ consensus_9647#0 AGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGT 780 consensus_9647#1 AGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGT 178 ************************************************************ consensus_9647#0 CCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTT 840 consensus_9647#1 CCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTT 238 ************************************************************ consensus_9647#0 TCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAA 900 consensus_9647#1 TCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTCTT---CCAAC 295 ************************************************* * *** consensus_9647#0 TGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTT 960 consensus_9647#1 TGATCTA--CTAAGGCAA------CCACCATCCATAGCACATTGAAAACGTGATTCAAAC 347 *** * * * ** ** ** * ** ** ** ****** * ** consensus_9647#0 TCTTTATC-TGGTGCAGTAAAATTAGCAACCATTGCTGCTATAGCCAAT-TGACGTTCAG 1018 consensus_9647#1 ATATCAGCACTGAACACTTCACTCCATAA--ATAGCTATAATAACGTGCGTCATATCCAC 405 * * * * ** * * * ** ** *** *** * * * * ** consensus_9647#0 AGGCTAATGATGATGAGGAATGATCACGTTCATTCACCGTAGTATTATTGGAGTCCATTG 1078 consensus_9647#1 CGGCTAAATGTC-CAAATGATGCAGGCATAAAAGTACC-TGGTGTCGGTTCAAT--ACCG 461 ****** * * *** * * * *** * ** * * * * * * consensus_9647#0 ATCCACGGCATCCTGGTTGTAAACCGAATACAGCTGCATGTCCATATTTACCTTCACGTG 1138 consensus_9647#1 ATCCATTTTTTTCT---------------------------------------------- 475 ***** * ** consensus_9647#0 GATGCAGGTCAAGATAGAAATAACCTAACAAACTATTGGAT 1179 consensus_9647#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||