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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1179 fasta sequence
[GCGATTCAACAAATTTATTGAACACAGAAAATAATGCGGAAAAATCAACTAAGAAGAATGCGATAGCAATATAATCGGAAACAGTCATTTCGAAATATCTGCGAAAAGCAATTACATGACTTACAAGATAATCCCTCAAGAGCATCTCGTAAAAAAACAAAACATTAAAGCAACACTATTAAAAAGTCCAGAAAAGGTTATATTTAAAAAACTCCAACAAAAGACAATCGAATTTTATTTTTCTCCTAACAAAATAAAAGTTGAAAGACAAATTACTTCAATTATGACGAATTAACTTTTAATAATTTGAAGAAAGCATGATCATTTGGTTCACGTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAATGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTTTCTTTATCTGGTGCAGTAAAATTAGCAACCATTG-CTG-CTA-TAGCCAATTGACGTTCAGAGGCTAATGATGATGAGGAATGATCACGTTCATTCACCGTAGTATTATTGGAGTCCATTGATCCACGGCATCCTGGTTGTAAACCGAATACAGCTGCATGTCCATATTTACCTTCACGTGGATGCAGGTCAAGATAGAAATAACCTAACAAACTATTGGAT]
[+] EMBL AI977598 [GCGATTCAACAAATTTATTGAACACAGAAAATAATGCGGAAAAATCAACTAAGAAGAATGCGATAGCAATATAATCGGAAACAGTCATTTCGAAATATCTGCGAAAAGCAATTACATGACTTACAAGATAATCCCTCAAGAGCATCTCGTAAAAAAACAAAACATTAAAGCAACACTATTAAAAAGTCCAGAAAAGGTTATATTTAAAAAACTCCAACAAAAGACAATCGAATTTTATTTTTCTCCTAACAAAATAAAAGTTGAAAGACAAATTACTTCAATTATGACGAATTAACTTTTAATAATTTGAAGAAAGCATGATCATTTGGTTCACGTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAAT ]
[+] EMBL BG932272 [ GCGGAAAAATCAACTAAGAAGAATGCGATAGCAATATAATCGGAAACAGTCATTTCGAAATATCTGCGAAAAGCAATTACATGACTTACAAGATAATCCCTCAAGAGCATCTCGTAAAAAAACAAAACATTAAAGCAACACTATTAAAAAGTCCAGAAAAGGTTATATTTAAAAAACTCCAACAAAAGACAATCGAATTTTATTTTTCTCCTAACAAAATAAAAGTTGAAAGACAAATTACTTCAATTATGACGAATTAACTTTTAATAATTTGAAGAAAGCATGATCATTTGGTTCACGTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCTGGACGAAGAATTTTTTC CG TAAcagatcca ]
[+] EMBL CD140718 [ atatggGATCATTTGGTTCACGTCCAAGAAAATCTCTCAACATATCTGTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAA ]
[+] EMBL CD197539 [ GTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCG ]
[+] EMBL CD197297 [ GTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCTGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTTACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCAT ]
[+] EMBL CD143032 [ TTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAGAGTATTTGTCGAGAATAANATAGACCAGCATTTGCTATACGTGAATTAA ]
[-] EMBL CD084175 [ GCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTCGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAATGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTTTCTTTATCTGGTGCAGTAAAATTAGCCACCATGGTCTGTCTACTAGCCAAgt ]
[-] EMBL CD064537 [ GTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACTACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAATGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTTTCTTTATCTGGTGCAGTAAAATTAGCAACCATTG CTG CTA TAGCCAATTGACGTTCAGAGGCTAATG ]
[-] EMBL BG930452 [ taaTAACAAATC GGGCGAA GGCTCATCATGTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACANAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAATGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTTTCTTTATCTGGTGCAGTAAAATTAGCAACCATTG CTG CTA TAGCCAATTGACGTTCAGAGGCTAATGATGATGAGGAATGATCACGTTCATTCACCGTAGTATTATTGGAGTCCATTGATCCACGGCATCCTGGTTGTAAACCGAATACAGCTGCATGTCCATATTTACCTTCACGTGGATGCAGGTCAAGATAGAAATAACCTAACAAACTATTGGAT]
consensusID : consensus_9647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[TGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTCTTCCAACTGATCTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCGATCCATTTTTTTCT]
[-] EMBL CD185451 [TGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTCTTCCAACTGATCTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCGATCCATTTTTTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9647#0 GCGATTCAACAAATTTATTGAACACAGAAAATAATGCGGAAAAATCAACTAAGAAGAATG 60
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 CGATAGCAATATAATCGGAAACAGTCATTTCGAAATATCTGCGAAAAGCAATTACATGAC 120
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 TTACAAGATAATCCCTCAAGAGCATCTCGTAAAAAAACAAAACATTAAAGCAACACTATT 180
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 AAAAAGTCCAGAAAAGGTTATATTTAAAAAACTCCAACAAAAGACAATCGAATTTTATTT 240
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 TTCTCCTAACAAAATAAAAGTTGAAAGACAAATTACTTCAATTATGACGAATTAACTTTT 300
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 AATAATTTGAAGAAAGCATGATCATTTGGTTCACGTCCAAGAAAATCTTTCAACATATCT 360
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 GTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGAT 420
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 TTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTG 480
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 AACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCA 540
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 AATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAA 600
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 TTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAAT 660
consensus_9647#1 --TGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAAT 58
**********************************************************
consensus_9647#0 GAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATT 720
consensus_9647#1 GAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATT 118
************************************************************
consensus_9647#0 AGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGT 780
consensus_9647#1 AGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGT 178
************************************************************
consensus_9647#0 CCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTT 840
consensus_9647#1 CCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTT 238
************************************************************
consensus_9647#0 TCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAA 900
consensus_9647#1 TCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTCTT---CCAAC 295
************************************************* * ***
consensus_9647#0 TGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTT 960
consensus_9647#1 TGATCTA--CTAAGGCAA------CCACCATCCATAGCACATTGAAAACGTGATTCAAAC 347
*** * * * ** ** ** * ** ** ** ****** * **
consensus_9647#0 TCTTTATC-TGGTGCAGTAAAATTAGCAACCATTGCTGCTATAGCCAAT-TGACGTTCAG 1018
consensus_9647#1 ATATCAGCACTGAACACTTCACTCCATAA--ATAGCTATAATAACGTGCGTCATATCCAC 405
* * * * ** * * * ** ** *** *** * * * * **
consensus_9647#0 AGGCTAATGATGATGAGGAATGATCACGTTCATTCACCGTAGTATTATTGGAGTCCATTG 1078
consensus_9647#1 CGGCTAAATGTC-CAAATGATGCAGGCATAAAAGTACC-TGGTGTCGGTTCAAT--ACCG 461
****** * * *** * * * *** * ** * * * * * *
consensus_9647#0 ATCCACGGCATCCTGGTTGTAAACCGAATACAGCTGCATGTCCATATTTACCTTCACGTG 1138
consensus_9647#1 ATCCATTTTTTTCT---------------------------------------------- 475
***** * **
consensus_9647#0 GATGCAGGTCAAGATAGAAATAACCTAACAAACTATTGGAT 1179
consensus_9647#1 -----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||