These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9665#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 975 fasta sequence [CCCTCCGAGCCAANAATTCGGCACGAGGCAGAAACAGGACTCAACATCTTGCATACAAT-GCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTTCAAAATAGTGGAGAATGACATAATTACAGTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGG-TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA-TTATTGTCAACATAACTTTTCCAGAATACAGCATTCGAACATGGCAGCGTTCCACTTGTAATGCAATACTTACATT-AAT-TCTGCG-AGCT-TAC-CAG-TA-CCTAAAATAACTTCTTATTTCAATTGCTAGNTACTTTNTATTANACTGAGTTCATTTCGATGAANAAAAAAACAATATGGAGCCATGTATATCATTATTAANGATATATTTGTTAATATACGGNAGT] [+] EMBL CD079733 [CCCTCCGAGCCAANAATTCGGCACGAGGCAGAAACAGGACTCAACATCTTGCATACAAT GCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTTCAAAATAGTGGAGAATGACATAATTACAGTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGATTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTNTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACATAACTTTTCCAG ATACAGCATTCG ACATGGCAGCG TCCACTTGT ATGC ATAC TACATT AAT TCTGCG AGCT TAC CAG TA CCTAAAn ] [+] EMBL CD081942 [ TGCATACAATGGCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTTCAAAATAGTGGAGAATGACATAATTACAGTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTNTTCCCCTATATACTGTTGCATTAGAA CACTGGAATCANNTA TGTC ACATAAC TTTCCAG ATACAGCATTCG ACATGGCAGCG TCCACTTGT ATGC ATAC TACATT AAT CTTGCG AGCT TAC CAG TA CCTNAAATAtc ] [-] EMBL CD073990 [ AAAATAGTGGAGAATGACATAATTACAGTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGATTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACATAACTTTTCCAGAATACAGCATTCGAACATGGCAGCGTTCCACTTGTAATGCAATACTTACATTAAATCTCTGCGAAGCTATACACAGTTACCCTAAAATAAt ] [+] EMBL CD079239 [ ACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTTCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACATAACTTTTCCAGAATACAGCATTCGAACATGGCAGCGTTCCACTTGTAATGCAATACTTACATTAAATCTCTGCGAAGCTATACACAGTTACCCTANAATAA TTCTTATTTCAATTGCTAGNTACTTTNTATTANACTGAGTTCATTTCGATGAANAAAAAAACAATATGGAGCCATGTATATCATTATTAANGATATATTTGTTAATATACGGNAGT] [-] EMBL CD186640 [ TCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTGCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATCTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACA ] [-] EMBL BG930919 [ atgGAGGATCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCGTTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAc ] [-] EMBL CD062520 [ TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCGTGTG TCCTGG ATTTTAG ] [-] EMBL CD149496 [ GCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACATAACTTTTCCAGAATACAGCATTCGAACATGGCAGCGTTCCACTTGTAATGCAATACTTACATT A ] consensusID : consensus_9665#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 500 fasta sequence [GCTGACGACTACCAAAAAAATCTTCCTGCTGCTCGGGAGGCCGAAGTTTTGAGTTTAATGGCTACCCTTGTTAATCGTCTTGAAGACCATATTCTTCCAGCTCTGCCTCGCGTTTTAGATGCAGTCTTTCAGTCTACTCTAGAGATGATCGATAAAGACTTGGAGGAATTTCCTGAACATCGAACTAATTTTTTCACTCTTCTACAGGCTGTAAATGCTCATTGTTTCTCTGCTTTGTTAAGCTTAACATCTGATAAGTTCAAACTGATTTTAGATAGTGTTATTTGGGCAATCAAACATACTATGCGTCAAGTCTCAGAAACAGGACTCAACATCTTGCATACAATGCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTT] [+] EMBL CD153414 [GCTGACGACTACCAAAAAAATCTTCCTGCTGCTCGGGAGGCCGAAGTTTTGAGTTTAATGGCTACCCTTGTTAATCGTCTTGAAGACCATATTCTTCCAGCTCTGCCTCGCGTTTTAGATGCAGTCTTTCAGTCTACTCTAGAGATGATCGATAAAGACTTGGAGGAATTTCCTGAACATCGAACTAATTTTTTCACTCTTCTACAGGCTGTAAATGCTCATTGTTTCTCTGCTTTGTTAAGCTTAACATCTGATAAGTTCAAACTGATTTTAGATAGTGTTATTTGGGCAATCAAACATACTATGCGTCAAGTCTCAGAAACAGGACTCAACATCTTGCATACAATGCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTAT ] [+] EMBL CD092991 [ AATGGCTACCCTTGTTAATCGTCTTGAAGACCATATTCTTCCAGCTCTGCCTCGCGTTTTAGATGCAGTCTTTCAGTCTACTCTAGAGATGATCGATAAAGACTTGGAGGAATTTCCTGAACATCGAACTAATTTTTTCACTCTTCTACAGGCTGTAAATGCTCATTGTTTCTCTGCTTTGTTAAGCTTAACATCTGATAAGTTCAAACTGATTTTAGATAGTGTTATTTGGGCAATCAAACATACTATGCGTCAAGTCTCAGAAACAGGACTCAACATCTTGCATACAATGCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9665#0 CCCTCCGAGCCAANAATTCGGCACGAGGCAGAAACAGGACTCAACATCTTGCATACAATG 60 consensus_9665#1 ------------------------------------------------------------ consensus_9665#0 CTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTT 120 consensus_9665#1 ------------------------------------------------------------ consensus_9665#0 ATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTA 180 consensus_9665#1 ------------------------------------------------------------ consensus_9665#0 ACTCTTCAGTCATCGCTGCTGGCTTATATGTTCAAAATAGTGGAGAATGACATAATTACA 240 consensus_9665#1 ------------------------------------------------------------ consensus_9665#0 GTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAA 300 consensus_9665#1 ------------------------------------------------------------ consensus_9665#0 TATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACG 360 consensus_9665#1 ------------------------------------------------------------ consensus_9665#0 CAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGT 420 consensus_9665#1 ------------------------------------------------------------ consensus_9665#0 GAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGGTCGCCGGAGAAGATTTATCTGAT 480 consensus_9665#1 ------------------------------GCTGACGACTACCAAAAAAATCTTCCTGC- 29 ** * * * * ** ** * *** consensus_9665#0 TTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGT 540 consensus_9665#1 ---TGCTCGGGAGGCCGAAGTTTTGAGTTTAAT--GGCTACCCTTGTTAATC---GTCTT 81 * * ** ** ** **** ** * *** * ** * * * * consensus_9665#0 CATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGA--CTAGTTGA 598 consensus_9665#1 GAAGACCATATTCTTCCAGCTCTGCCTCGCGTTTTAGATGCAGTCTTTCAGTCTACTCTA 141 * * * *** * * * * ** * * ** ** * * * * *** * * consensus_9665#0 AAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTG 658 consensus_9665#1 GAGA-TGATCGATAAAGACTTGGAGGAATT---TCCTGAACATCGAACTAATTTTTTC-- 195 *** * **** ** ** * * * ** ** * * * ****** ** * consensus_9665#0 AAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCC 718 consensus_9665#1 -ACTCTTCTACAG--GCTGTAA-ATGCTCATTGTTTCTCTGCT--TTGTTAAGCTTAACA 249 * ** * *** * ** ** * **** ** * *** ** * consensus_9665#0 CTATATACTGTTGCATTAGAACCAC-TGGAATCATTATTGTCAACATAACTTTTCCAGAA 777 consensus_9665#1 TCTGATAAGTTCAAACTGATTTTAGATAGTGTTATT-TGGGCAATCAAACATACTATGCG 308 *** * * * * * * * *** * * *** *** * * consensus_9665#0 TACAGCATTCGAACATGG---CAGCGTTCCACTTGTAATGCAATACTTACATTAATTCTG 834 consensus_9665#1 TCAAGTCTCAGAAACAGGACTCAACATCTTGCATACAATGCT-TGTAAATATGTCTAGTG 367 * ** * *** ** ** * * * * ***** * * ** * ** consensus_9665#0 CGAGCTTACCAGTACCTAAAATAACTTCTTATTTCAATTGCTAGNTACTTTNTATTANAC 894 consensus_9665#1 CGAACTCCGAGAAACGTCAGGTA-TTCTTTAAAACATTCTTTATGGATATTCTTCAACAC 426 *** ** ** * * ** * *** ** * ** * ** * * ** consensus_9665#0 TGAGTTCATTTCGATGAANAAAAAAACAATATGGAGCCATGTATATCATTATTAANGATA 954 consensus_9665#1 -ATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGC- 484 *** * ** * * * * * ** ** ** * * * * consensus_9665#0 TATTTGTTAATATACGGNAGT 975 consensus_9665#1 TGCTGGCTTATATGTT----- 500 * * * * **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||