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Schistosoma mansoni
cluster # 9665 cluster # 9665       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9665#0 length = 975 sequences # 8  
consensus_9665#1 length = 500 sequences # 2  

consensusID : consensus_9665#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 975
fasta sequence
                              [CCCTCCGAGCCAANAATTCGGCACGAGGCAGAAACAGGACTCAACATCTTGCATACAAT-GCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTTCAAAATAGTGGAGAATGACATAATTACAGTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGG-TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA-TTATTGTCAACATAACTTTTCCAGAATACAGCATTCGAACATGGCAGCGTTCCACTTGTAATGCAATACTTACATT-AAT-TCTGCG-AGCT-TAC-CAG-TA-CCTAAAATAACTTCTTATTTCAATTGCTAGNTACTTTNTATTANACTGAGTTCATTTCGATGAANAAAAAAACAATATGGAGCCATGTATATCATTATTAANGATATATTTGTTAATATACGGNAGT]

[+] EMBL CD079733             [CCCTCCGAGCCAANAATTCGGCACGAGGCAGAAACAGGACTCAACATCTTGCATACAAT GCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTTCAAAATAGTGGAGAATGACATAATTACAGTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGATTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTNTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACATAACTTTTCCAG ATACAGCATTCG ACATGGCAGCG TCCACTTGT ATGC ATAC TACATT AAT TCTGCG AGCT TAC CAG TA CCTAAAn                                                                                                                        ]
[+] EMBL CD081942             [                                                 TGCATACAATGGCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTTCAAAATAGTGGAGAATGACATAATTACAGTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTNTTCCCCTATATACTGTTGCATTAGAA CACTGGAATCANNTA TGTC ACATAAC TTTCCAG ATACAGCATTCG ACATGGCAGCG TCCACTTGT ATGC ATAC TACATT AAT CTTGCG AGCT TAC CAG TA CCTNAAATAtc                                                                                                                    ]
[-] EMBL CD073990             [                                                                                                                                                                                                                      AAAATAGTGGAGAATGACATAATTACAGTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGATTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACATAACTTTTCCAGAATACAGCATTCGAACATGGCAGCGTTCCACTTGTAATGCAATACTTACATTAAATCTCTGCGAAGCTATACACAGTTACCCTAAAATAAt                                                                                                                    ]
[+] EMBL CD079239             [                                                                                                                                                                                                                                                                                                         ACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTTCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACATAACTTTTCCAGAATACAGCATTCGAACATGGCAGCGTTCCACTTGTAATGCAATACTTACATTAAATCTCTGCGAAGCTATACACAGTTACCCTANAATAA TTCTTATTTCAATTGCTAGNTACTTTNTATTANACTGAGTTCATTTCGATGAANAAAAAAACAATATGGAGCCATGTATATCATTATTAANGATATATTTGTTAATATACGGNAGT]
[-] EMBL CD186640             [                                                                                                                                                                                                                                                                                                                                                      TCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTGCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATCTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACA                                                                                                                                                                                                                           ]
[-] EMBL BG930919             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   atgGAGGATCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCGTTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAc                                                                                                                                                                                                                                                    ]
[-] EMBL CD062520             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCGTGTG TCCTGG ATTTTAG                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD149496             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACATAACTTTTCCAGAATACAGCATTCGAACATGGCAGCGTTCCACTTGTAATGCAATACTTACATT A                                                                                                                                                         ]


>consensus_9665#0 CCCTCCGAGCCAANAATTCGGCACGAGGCAGAAACAGGACTCAACATCTTGCATACAATG CTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTT ATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTA ACTCTTCAGTCATCGCTGCTGGCTTATATGTTCAAAATAGTGGAGAATGACATAATTACA GTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAA TATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACG CAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGT GAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGGTCGCCGGAGAAGATTTATCTGAT TTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGT CATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAA GAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAA ATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCCCT ATATACTGTTGCATTAGAACCACTGGAATCATTATTGTCAACATAACTTTTCCAGAATAC AGCATTCGAACATGGCAGCGTTCCACTTGTAATGCAATACTTACATTAATTCTGCGAGCT TACCAGTACCTAAAATAACTTCTTATTTCAATTGCTAGNTACTTTNTATTANACTGAGTT CATTTCGATGAANAAAAAAACAATATGGAGCCATGTATATCATTATTAANGATATATTTG TTAATATACGGNAGT



consensusID : consensus_9665#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 500
fasta sequence
                              [GCTGACGACTACCAAAAAAATCTTCCTGCTGCTCGGGAGGCCGAAGTTTTGAGTTTAATGGCTACCCTTGTTAATCGTCTTGAAGACCATATTCTTCCAGCTCTGCCTCGCGTTTTAGATGCAGTCTTTCAGTCTACTCTAGAGATGATCGATAAAGACTTGGAGGAATTTCCTGAACATCGAACTAATTTTTTCACTCTTCTACAGGCTGTAAATGCTCATTGTTTCTCTGCTTTGTTAAGCTTAACATCTGATAAGTTCAAACTGATTTTAGATAGTGTTATTTGGGCAATCAAACATACTATGCGTCAAGTCTCAGAAACAGGACTCAACATCTTGCATACAATGCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTT]

[+] EMBL CD153414             [GCTGACGACTACCAAAAAAATCTTCCTGCTGCTCGGGAGGCCGAAGTTTTGAGTTTAATGGCTACCCTTGTTAATCGTCTTGAAGACCATATTCTTCCAGCTCTGCCTCGCGTTTTAGATGCAGTCTTTCAGTCTACTCTAGAGATGATCGATAAAGACTTGGAGGAATTTCCTGAACATCGAACTAATTTTTTCACTCTTCTACAGGCTGTAAATGCTCATTGTTTCTCTGCTTTGTTAAGCTTAACATCTGATAAGTTCAAACTGATTTTAGATAGTGTTATTTGGGCAATCAAACATACTATGCGTCAAGTCTCAGAAACAGGACTCAACATCTTGCATACAATGCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTAT                                                                                          ]
[+] EMBL CD092991             [                                                        AATGGCTACCCTTGTTAATCGTCTTGAAGACCATATTCTTCCAGCTCTGCCTCGCGTTTTAGATGCAGTCTTTCAGTCTACTCTAGAGATGATCGATAAAGACTTGGAGGAATTTCCTGAACATCGAACTAATTTTTTCACTCTTCTACAGGCTGTAAATGCTCATTGTTTCTCTGCTTTGTTAAGCTTAACATCTGATAAGTTCAAACTGATTTTAGATAGTGTTATTTGGGCAATCAAACATACTATGCGTCAAGTCTCAGAAACAGGACTCAACATCTTGCATACAATGCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTT]


>consensus_9665#1 GCTGACGACTACCAAAAAAATCTTCCTGCTGCTCGGGAGGCCGAAGTTTTGAGTTTAATG GCTACCCTTGTTAATCGTCTTGAAGACCATATTCTTCCAGCTCTGCCTCGCGTTTTAGAT GCAGTCTTTCAGTCTACTCTAGAGATGATCGATAAAGACTTGGAGGAATTTCCTGAACAT CGAACTAATTTTTTCACTCTTCTACAGGCTGTAAATGCTCATTGTTTCTCTGCTTTGTTA AGCTTAACATCTGATAAGTTCAAACTGATTTTAGATAGTGTTATTTGGGCAATCAAACAT ACTATGCGTCAAGTCTCAGAAACAGGACTCAACATCTTGCATACAATGCTTGTAAATATG TCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTT CAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCA TCGCTGCTGGCTTATATGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9665#0      CCCTCCGAGCCAANAATTCGGCACGAGGCAGAAACAGGACTCAACATCTTGCATACAATG 60
consensus_9665#1      ------------------------------------------------------------
                                                                                  

consensus_9665#0      CTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTT 120
consensus_9665#1      ------------------------------------------------------------
                                                                                  

consensus_9665#0      ATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTA 180
consensus_9665#1      ------------------------------------------------------------
                                                                                  

consensus_9665#0      ACTCTTCAGTCATCGCTGCTGGCTTATATGTTCAAAATAGTGGAGAATGACATAATTACA 240
consensus_9665#1      ------------------------------------------------------------
                                                                                  

consensus_9665#0      GTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAA 300
consensus_9665#1      ------------------------------------------------------------
                                                                                  

consensus_9665#0      TATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACG 360
consensus_9665#1      ------------------------------------------------------------
                                                                                  

consensus_9665#0      CAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGT 420
consensus_9665#1      ------------------------------------------------------------
                                                                                  

consensus_9665#0      GAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGGTCGCCGGAGAAGATTTATCTGAT 480
consensus_9665#1      ------------------------------GCTGACGACTACCAAAAAAATCTTCCTGC- 29
                                                       ** * *  *  * ** ** *  ***  

consensus_9665#0      TTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGT 540
consensus_9665#1      ---TGCTCGGGAGGCCGAAGTTTTGAGTTTAAT--GGCTACCCTTGTTAATC---GTCTT 81
                         *  * ** **   **     **** **  *  ***       *  ** *   * * *

consensus_9665#0      CATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGA--CTAGTTGA 598
consensus_9665#1      GAAGACCATATTCTTCCAGCTCTGCCTCGCGTTTTAGATGCAGTCTTTCAGTCTACTCTA 141
                       * *    * *** *  *  * *   ** *  *  ** **   * * * *  *** *  *

consensus_9665#0      AAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTG 658
consensus_9665#1      GAGA-TGATCGATAAAGACTTGGAGGAATT---TCCTGAACATCGAACTAATTTTTTC-- 195
                       *** *  ****  **   ** * * * **   ** * *   *  ******  **  *  

consensus_9665#0      AAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCC 718
consensus_9665#1      -ACTCTTCTACAG--GCTGTAA-ATGCTCATTGTTTCTCTGCT--TTGTTAAGCTTAACA 249
                       * ** *  ***   *    ** **     *  ****  ** *      ***  **  * 

consensus_9665#0      CTATATACTGTTGCATTAGAACCAC-TGGAATCATTATTGTCAACATAACTTTTCCAGAA 777
consensus_9665#1      TCTGATAAGTTCAAACTGATTTTAGATAGTGTTATT-TGGGCAATCAAACATACTATGCG 308
                          ***   *   * *      *  * *  * *** * * ***   *** *     *  

consensus_9665#0      TACAGCATTCGAACATGG---CAGCGTTCCACTTGTAATGCAATACTTACATTAATTCTG 834
consensus_9665#1      TCAAGTCTCAGAAACAGGACTCAACATCTTGCATACAATGCT-TGTAAATATGTCTAGTG 367
                      *  **  *  ***   **   ** * *    * *  *****  *    * **   *  **

consensus_9665#0      CGAGCTTACCAGTACCTAAAATAACTTCTTATTTCAATTGCTAGNTACTTTNTATTANAC 894
consensus_9665#1      CGAACTCCGAGAAACGTCAGGTA-TTCTTTAAAACATTCTTTATGGATATTCTTCAACAC 426
                      *** **       ** * *  **  *  ***   ** *   **   *  ** *   * **

consensus_9665#0      TGAGTTCATTTCGATGAANAAAAAAACAATATGGAGCCATGTATATCATTATTAANGATA 954
consensus_9665#1      -ATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGC- 484
                         ***   *   ** *   *     *   *    *  ** **  ** * * * *     

consensus_9665#0      TATTTGTTAATATACGGNAGT 975
consensus_9665#1      TGCTGGCTTATATGTT----- 500
                      *  * * * ****        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)