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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 981 fasta sequence
[TAATCTCGATGGAGAGGCAGAGGTCTTTCGAAGTCCTTCATGTCGATGATGAAACTTTTGACCAAGAGACTGATAGTCTTGTCGAAAGCGTCTACTTGGTTTCTGAGCAAGCTGTTNCTGATGAATCACCTTCTTACACTGAAGTTTCAGAGTCCGACAAGTCAGAGAATTCTCTATCCACATCAACNTTCGATTTCGTTAAACTGGACATCGACCAAAACCATGCTGCCATTACACAACCCTGTCCATCTTGTAACTTGGATCAGTTACACTGTCTAAGCGTACCTGATGAGAGAGAAACAACTATTGTATATGAACAACCATGTATCCAGTCTTCAACGTACTCTGAAATAAGCGCCTCTGATCGGATACATTTTTACTTCCATGATTTTCTTTTGGGAGGCATAATTTTCAGTTTGCTTTTAGGTCACATGCTGTATTCTGAACAATGTTATAAGAATAGAATGGC-A-AGTTGTGAAATTGAACGTGACAAATTGTTAACAAACATTTCTTTTCTATCGACTGAAATTTCACAAAAAGATACAGCATATCGACACTTGGAAATTAAAAATAAACACCTTAAAAATATAACGCATCAATTGCATTCAGATATATCTATACTAACAGCTGAATTACGTGACAAAGCACTGGCTTACAATGAATTAAAATCAGACTACAAATATGTTAGTGATAAAATGAAAGAGTTAACCAATGAATTGCGAAAATTGAAATTTGCGCTTATGGATTTGAAACGCTCTTCGTTATTTTTCCCCGGTATCAAATTGATCAAAGATATCTTGTGTAAAATTTTAAGCGTTTGCCCTGATCTAGATGGTGTGTAGACAAATAAATGAATTCAAAGTGAGCCGTGTCTTCGAAACGGAATAAAGGATAATATATTTTTCTTCTTTTCTCAATTAATGTTTTTGTCATCATATTTCTTTATCTTGNTAAGNTNTATTGAGTAATTNTGGCATTTCG]
[+] EMBL SMAA69084 [TAATCTCGATGGAGAGGCAGAGGTCTTTCGAAGTCCTTCATGTCGATGATGAAACTTTTGACCAAGAGACTGATAGTCTTGTCGAAAGCGTCTACTTGGTTTCTGAGCAAGCTGTTNCTGATGAATCACCTTCTTACACTGAAGTTTCAGAGTCCGACAAGTCAGAGAATTCTCTATCCACATCAACNTTCGATTTCGTTAAACTGGACATCGA ]
[-] EMBL CD191914 [ TTCAGAGTCCGACAAGTCAGAGAATTCTCTATCCACATCAACGTTCGATTTCGTTAAAATGGACATCGACCAAAACCATGCTGCCATTACACAACCCTGTCCATCTTGTAACTTGGATCAGTTACACTGTCTAAGCGTACCTGATGAGAGAGAAACAACTATTGTATATGTACAACCATGTATCCAGTCTTCAACGTACTCTGACATAAGCGCCTCTGTTCGGATACATTTTTACTTCCATGATTTTTTTTTGGGAGGCATAATTTTCAGTTTGCTTTTAGGTCACATGCTGTATTCTGAACGATGTTATAAGCATAGAATGGCTATAGTT ]
[+] EMBL CD111098 [ TTTCGTTAAACTGGACATCGACCAAAACCATGCTGCCATTACACAACCCTCTCCATCTTGTAACTTGGATCAGTTACACTGTCTAAGCGTACCTGATGAGAGAGAAACAACTATTGTATATGAACAACCATGTATCCAGTCTTCAACGTACTCTGAAATAAGCGCCTCTGATCGGATACATTTTTACTTCCATGATTTTCTTTTGGGAGGCATAATTTTCAGTTTGCTTTTAGGTCACATGCTGTATTCTGAGCAATGTTATAAGAATAGAATGGC A AGTTGTGAAATTGAACGTGACAAATTGTTAACAAACATTTCTTTTCTATCGATTGAAATTTCACAAAAAGATACAGCATATCGACACTTGGAAATTAAAAATAAACACCTTAAAAATATAACGCATCAATTGCATTCAGATATATCTATACTAACAGCTGAATTACGTGACAAAGCACTGGCTTACAATGA ]
[-] EMBL CD139700 [ AACTATTGTATATGAACAACCATGTATCCAGTCTTCAACGTACTCTGAAATAAGCGCCTCTGATCGGATACATTTTTACTTCCATGATTTTCTTTTGGGAGGCATAATTTTCAGTTTGCTTTTAGGTCACATGCTGTATTCTGAACAATGTTATAAGAATAGAATGGC A AGTTGTGAAATTGAACGTGACAAATTGTTAACAAACATTTCTTTTCTATCGACTGAAATTTCACAAAAAGATACAGCA ]
[+] EMBL CD079211 [ GGAGGCATAATTTTCAGTTTGCTTTTAGGTCACATGCTGTATTCTGAACAATGTTATAAGAATAGAATGGC A AGTTGTGAAATTGAACGTGACAAATTGTTAACAAACATTGGTTTTCTATCGACTGAAATTTCACAAAAAGATACAGCATATCGACACTTGGAAATTAAAAATAAACACCTTAAAAATATAACGCATCAATTGCATTCAGATATATCTATACTAACAGCTGAATTACGTGACAAAGCACTGGCTTACAATGAATTAAAATCAGACTACAAATATGTTAGTGATAAAATGAAAGAGTTAACCAATGAATTGCGAAAATTGAAATTTGCGCTTATGGATTTGAAACGCTCTTCGTTATTTTTCCCCGGTATCAAATTGATCAAAGATATCTTGTGTAAAATTTTAAGCGTTTGCCCTGATCTAGATGGTGTGTAGACAAATAAATGAATTCAAAGTGAGCCGTGTCTTCGAAACGGAATAAAGGATAATATATTTTTCTTCTTTTCTCAATTAATGTTTTTGTCATCATATTTCTTTATCTTGNTAAGNTNTATTGAGTAATTNTGGCATTTCG]
[-] EMBL CD139818 [ TAATTTTCAGTTTGCTTTTAGGTCACATGCTGTATTCTGAACAATGTTATAAGAATAGAATGGC A AGTTGTGAAATTGAACGTGACAAATTGTTAACAAACATTTCTTTTCTATCGACTGAAATTTCACAAAAAGATACAGCA ]
consensusID : consensus_9686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 767 fasta sequence
[CGGAGCCATTAATTCGGCACGCAGAAGTTGTGAAATTGAACGTGACAAATTGTTAACAAACATTTCTTTTCTATCGACTGAAATTTCACAAAAAGATACAGCATATCGACACTTGGAAATTAAAAATAAACACCTTAAAAATATAACCCATCAATTGCATTCAGATATATCTATACTAACAGCTGAATTACGTGACAAAGCACTGGCTTACAATGAATTAAAATCAGACTACAAATATGTTAGTGATAAAATGAAAGAGTTAACCAATGAATTGCGAAAATTGAAATTTGCGCTTATGGATTTGAAACGCTCTTCGTTATTTTTCCCCGGTATCAGATTGATCAAAGATATCTTGTGTAAAATTTTAAGCGTTTGCCCTGATCTAGATGGTGTGTAGACAAATAAATGAATTCAAAGTGAGCCGTGTCTTCGAAACGGAATAAAGGATAATATATTTTTCTTCTTTTCTCAATTAATGTTTTTGTCATCATATTTCTTTATCTTGTTAAGTTTTATTGAGTAATTTTGGCATTTCGTATAAAATCTCTTTTATCTTGCAGCTGCTATTGTAAACATTTATACCAAAAGAGTATTTATAATTTATCTTCATTATATACTTCATTCTGAGAATTTTCCTTAAAGTCATTACGTCACAGTTCAAATAGTATCATTTAAACTATAACACAAATAGCCCGAAATAACCTCATACAAAAATAGAGTGAAATATCGATCTATTCCATTCTTTCCC-AATAAATAAATAATGTACC]
[+] EMBL CD081766 [CGGAGCCATTAATTCGGCACGCAGAAGTTGTGAAATTGAACGTGACAAATTGTTAACAAACATTTCTTTTCTATCGACTGAAATTTCACAAAAAGATACAGCATATCGACACTTGGAAATTAAAAATAAACACCTTAAAAATATAACCCATCAATTGCATTCAGATATATCTATACTAACAGCTGAATTACGTGACAAAGCACTGGCTTACAATGAATTAAAATCAGACTACAAATATGTTAGTGATAAAATGAAAGAGTTAACCAATGAATTGCGAAAATTGAAATTTGCGCTTATGGATTTGAAACGCTCTTCGTTATTTTTCCCCGGTATCAGATTGATCAAAGATATCTTGTGTAAAATTTTAAGCGTTTGCCCTGATCTAGATGGTGTGTAGACAAATAAATGAATTCAAAGTGAGCCGTGTCTTCGAAACGGAATAAAGGATAATATATTTTTCTTCTTTTCTCAATTAATGTTTTTGTCATCATATTTCTTTATCTTGTTAAGTTTTATTGAGTAATTTTGGCATTTCGTATAAAATCTCTTTTATCTTGCAGCTGCTATTGTAAACATTTATACCAAAAGAGTATTTATAATTTATCTTCATTATATACTTCATTCTGAGAATTTTCCTTAAAGTCATTACGTCACAGTTCAAATAGTATCATTTAAACTATAACACAAATAGCCCGAAATAACCTCATACAAAAATAGAGTGAAATATCGATCTATTCCATTCTTTCCC AATAAATAAATA ]
[-] EMBL CD075497 [ AGTTGTGAAATTGAACGTGACAAATTGTTAACAAACATTTCTTTTCTATCGACTGAAATTTCACAAAAAGATACAGCATATCGACACTTGGAAATTAAAAATAAACACCTTAAAAATATAACGCATCAATTGCATTCAGATATATCTATACTAACAGCTGAATTACGTGACAAAGCACTGGCTTACAATGAATTAAAATCAGACTACAAATATGTTAGTGATAAAATGAAAGAGTTAACCAATGAATTGCGAAAATTGAAATTTGCGCTTATGGATTTGAAACGCTCTTCGTTATTTTTCCCCGGTATCAGATTGATCAAAGATATCTTGTGTAAAATTTTAAGCGTTTGCCCTGATCTAGATGGTGTGTAGACAAATAAATGAATTCAAAGTGAGCCGTGTCTTCGAAACGGAATAAAGGATAATATATTTTTCTTCTTTTCTCAATTAATGTTTTTGTCATCATATTTCTTTATCTTGTTAAGTTTTATTGAGTAATTTTGGCATTTCGTATAAAATCTCTTTTATCTTGCAGCTGCTATTGTAAACATTTATACCAAAAGAGTATTTATAATTTATCTTCATTATATACTTCATTCTGAGAATTTTCCTTAAAGTCATTACGTCACAGTTCAAATAGTATCATTTAAACTATAACACAAATAGCCCGAAATAACCTCATACAAAAATAGAGTGAAATATCGATCTATTCCATTCTTGCCCTAATAAATAAATAA ]
[-] EMBL CD196395 [ GATTGATCAAAGATATCTTGTGTAAAATTTTAAGCGTTTGCCCTGATCTAGATGGTGTGTAGACAAATAAATGAATTCAAAGTGAGCCGTGTCTTCGAAACGGAATAAAGGATAATATATTTTTCTTCTTTTCTCAATTAATGTTTTTGTCATCATATTTCTTTATCTTGTTAAGTTTTATTGAGTAATTTTGGCATTTCGTATAAAATCTCTTTTATCTTGCAGCTGCTATTGTAAACATTTATACCAAAAGAGTATTTATAATTTATCTTCATTATATACTTCATTCTGAGAATTTTCCTTAAAGTCATTACGTCACAGTTCAAATAGTATCATTTAAACTATAACACAAATAGCCCGAAATAACCTCATACAAAAATAGAGTGAAATATCGATCTATTCCATTCTTTCCC AATAAATAAATAATGTACC]
[-] EMBL CD140670 [ CGGAATAAAGGATNATATATTTTTCTTCTTTTCTCAATTAATGTTTTTGTCATCATATTTCTTTATCTTGTTAAGTTTTATTGAGTAATTTTGGCATTTCGTATAAAATCTCTTTTATCTTGCAGCTGCTATTGTAAACATTTATACCAAAAGAGTATTTATAATTTATCTTCATTATATACTTCATTCTGAGAATTTTCCTTAAAGTCATTACGTCACAGTTCAAATAGTATCATTTAAACTATAACACAAATAGCCCGAAATAACCTCATACAAAAATAGAGTGAAATATCGATCTATTCCATTCTTTCCC AATAAATAAATAATGTACC]
consensusID : consensus_9686#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[GTGGGCACTGCTTTAAAAATTTTAACACTAAGCATTTGATCGTATTGAAATACATTTCTTTTCTATCGACTGAAATTTCACAAAAAGATACAGCATATCGACACTTGGAAATTAAAAATAAACACCTTAAAAATATAACGCATCAATTGCATTCAGATATATCTATACTAACAGCTGAATTACGTGACAAAGCACTGGCTTACAATGAATTAAAATCAGACTACAAATATGTTAGTGATAAAATGAAAGAGTTAACCAATGAATTGCGAAAATTGAAATTTGCGCTTATGGATTTGAAACGCTCTTCGTTATTTTTCCCCGGTATCAGATTGATCAAAGATATCTTGTGTAAAATTTTAAGCGTTTGCCCTGATCTAGATGGTGTGTAGACAAATAAATGAATTCAAAGTGAGCCGTGTCTTCGAAACGGAATAAAGGATAATATATTTTTCTTCTTTTCTCAATTAATGTTTTTGTCATCATATTCTTTTATC]
[+] EMBL CD083433 [GTGGGCACTGCTTTAAAAATTTTAACACTAAGCATTTGATCGTATTGAAATACATTTCTTTTCTATCGACTGAAATTTCACAAAAAGATACAGCATATCGACACTTGGAAATTAAAAATAAACACCTTAAAAATATAACGCATCAATTGCATTCAGATATATCTATACTAACAGCTGAATTACGTGACAAAGCACTGGCTTACAATGAATTAAAATCAGACTACAAATATGTTAGTGATAAAATGAAAGAGTTAACCAATGAATTGCGAAAATTGAAATTTGCGCTTATGGATTTGAAACGCTCTTCGTTATTTTTCCCCGGTATCAGATTGATCAAAGATATCTTGTGTAAAATTTTAAGCGTTTGCCCTGATCTAGATGGTGTGTAGACAAATAAATGAATTCAAAGTGAGCCGTGTCTTCGAAACGGAATAAAGGATAATATATTTTTCTTCTTTTCTCAATTAATGTTTTTGTCATCATATTCTTTTATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9686#1 ------------------------------------------------------------
consensus_9686#2 ------------------------------------------------------------
consensus_9686#0 TAATCTCGATGGAGAGGCAGAGGTCTTTCGAAGTCCTTCATGTCGATGATGAAACTTTTG 60
consensus_9686#1 ------------------------------------------------------------
consensus_9686#2 ------------------------------------------------------------
consensus_9686#0 ACCAAGAGACTGATAGTCTTGTCGAAAGCGTCTACTTGGTTTCTGAGCAAGCTGTTNCTG 120
consensus_9686#1 ------------------------------------------------------------
consensus_9686#2 ------------------------------------------------------------
consensus_9686#0 ATGAATCACCTTCTTACACTGAAGTTTCAGAGTCCGACAAGTCAGAGAATTCTCTATCCA 180
consensus_9686#1 ------------------------------------------------------------
consensus_9686#2 ------------------------------------------------------------
consensus_9686#0 CATCAACNTTCGATTTCGTTAAACTGGACATCGACCAAAACCATGCTGCCATTACACAAC 240
consensus_9686#1 ------------------------------------------------------------
consensus_9686#2 ------------------------------------------------------------
consensus_9686#0 CCTGTCCATCTTGTAACTTGGATCAGTTACACTGTCTAAGCGTACCTGATGAGAGAGAAA 300
consensus_9686#1 ------------------------------------------------------------
consensus_9686#2 ------------------------------------------------------------
consensus_9686#0 CAACTATTGTATATGAACAACCATGTATCCAGTCTTCAACGTACTCTGAAATAAGCGCCT 360
consensus_9686#1 ------------------------------------------------------------
consensus_9686#2 ------------------------------------------------------------
consensus_9686#0 CTGATCGGATACATTTTTACTTCCATGATTTTCTTTTGGGAGGCATAATTTTCAGTTTGC 420
consensus_9686#1 --------------------------CGGAGCCATTAATTCGGCACGCAGAAGTTGTGAA 34
consensus_9686#2 ---------------------------------GTGGGCACTGCTT-TAAAAATTTTAAC 26
consensus_9686#0 TTTTAGGTCACATGCTGTATTCTGAACAATGTTATAAGAATAGAAT-GGCAAGTTGTGAA 479
* * ** ** * *
consensus_9686#1 ATTGAACGTGACAAATTGTTAACAAACATTTCTTTTCTATCGACTGAAATTTCACAAAAA 94
consensus_9686#2 ACTAAGCATTTGATCGTATTGAAATACATTTCTTTTCTATCGACTGAAATTTCACAAAAA 86
consensus_9686#0 ATTGAACGTGACAAATTGTTAACAAACATTTCTTTTCTATCGACTGAAATTTCACAAAAA 539
* * * * * * * ** * * ***********************************
consensus_9686#1 GATACAGCATATCGACACTTGGAAATTAAAAATAAACACCTTAAAAATATAACCCATCAA 154
consensus_9686#2 GATACAGCATATCGACACTTGGAAATTAAAAATAAACACCTTAAAAATATAACGCATCAA 146
consensus_9686#0 GATACAGCATATCGACACTTGGAAATTAAAAATAAACACCTTAAAAATATAACGCATCAA 599
***************************************************** ******
consensus_9686#1 TTGCATTCAGATATATCTATACTAACAGCTGAATTACGTGACAAAGCACTGGCTTACAAT 214
consensus_9686#2 TTGCATTCAGATATATCTATACTAACAGCTGAATTACGTGACAAAGCACTGGCTTACAAT 206
consensus_9686#0 TTGCATTCAGATATATCTATACTAACAGCTGAATTACGTGACAAAGCACTGGCTTACAAT 659
************************************************************
consensus_9686#1 GAATTAAAATCAGACTACAAATATGTTAGTGATAAAATGAAAGAGTTAACCAATGAATTG 274
consensus_9686#2 GAATTAAAATCAGACTACAAATATGTTAGTGATAAAATGAAAGAGTTAACCAATGAATTG 266
consensus_9686#0 GAATTAAAATCAGACTACAAATATGTTAGTGATAAAATGAAAGAGTTAACCAATGAATTG 719
************************************************************
consensus_9686#1 CGAAAATTGAAATTTGCGCTTATGGATTTGAAACGCTCTTCGTTATTTTTCCCCGGTATC 334
consensus_9686#2 CGAAAATTGAAATTTGCGCTTATGGATTTGAAACGCTCTTCGTTATTTTTCCCCGGTATC 326
consensus_9686#0 CGAAAATTGAAATTTGCGCTTATGGATTTGAAACGCTCTTCGTTATTTTTCCCCGGTATC 779
************************************************************
consensus_9686#1 AGATTGATCAAAGATATCTTGTGTAAAATTTTAAGCGTTTGCCCTGATCTAGATGGTGTG 394
consensus_9686#2 AGATTGATCAAAGATATCTTGTGTAAAATTTTAAGCGTTTGCCCTGATCTAGATGGTGTG 386
consensus_9686#0 AAATTGATCAAAGATATCTTGTGTAAAATTTTAAGCGTTTGCCCTGATCTAGATGGTGTG 839
* **********************************************************
consensus_9686#1 TAGACAAATAAATGAATTCAAAGTGAGCCGTGTCTTCGAAACGGAATAAAGGATAATATA 454
consensus_9686#2 TAGACAAATAAATGAATTCAAAGTGAGCCGTGTCTTCGAAACGGAATAAAGGATAATATA 446
consensus_9686#0 TAGACAAATAAATGAATTCAAAGTGAGCCGTGTCTTCGAAACGGAATAAAGGATAATATA 899
************************************************************
consensus_9686#1 TTTTTCTTCTTTTCTCAATTAATGTTTTTGTCATCATATTTCTTTATCTTGTTAAGTTTT 514
consensus_9686#2 TTTTTCTTCTTTTCTCAATTAATGTTTTTGTCATCATATTCTTTTATC------------ 494
consensus_9686#0 TTTTTCTTCTTTTCTCAATTAATGTTTTTGTCATCATATTTCTTTATCTTGNTAAGNTNT 959
**************************************** ******
consensus_9686#1 ATTGAGTAATTTTGGCATTTCGTATAAAATCTCTTTTATCTTGCAGCTGCTATTGTAAAC 574
consensus_9686#2 ------------------------------------------------------------
consensus_9686#0 ATTGAGTAATTNTGGCATTTCG-------------------------------------- 981
consensus_9686#1 ATTTATACCAAAAGAGTATTTATAATTTATCTTCATTATATACTTCATTCTGAGAATTTT 634
consensus_9686#2 ------------------------------------------------------------
consensus_9686#0 ------------------------------------------------------------
consensus_9686#1 CCTTAAAGTCATTACGTCACAGTTCAAATAGTATCATTTAAACTATAACACAAATAGCCC 694
consensus_9686#2 ------------------------------------------------------------
consensus_9686#0 ------------------------------------------------------------
consensus_9686#1 GAAATAACCTCATACAAAAATAGAGTGAAATATCGATCTATTCCATTCTTTCCCAATAAA 754
consensus_9686#2 ------------------------------------------------------------
consensus_9686#0 ------------------------------------------------------------
consensus_9686#1 TAAATAATGTACC 767
consensus_9686#2 -------------
consensus_9686#0 -------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||