These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9691#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1334 fasta sequence [ATCTTTTGGTGTATTATCAACCAAGGCATCGTCTTTTTCTGCAGAATGTTGTTTGATATTTGTGTTACAATGTGCCCGATGACTTAATTGCAGATACTCTCGAACTGCATTTTCGCGGTCGTAATCGGCAGATATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTTGAGGTCGTCTGGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCCAGGTTAGTGTCCGCTGAATTAGGTCTTTTTACTAGTTCCTCCTGCTCCTCAATAGCCTTTGTATGTGTTCTGGGTTTTTTCACTTTTTCTCCATCACCATATTTCAAAAAAGGGGGCCTATCTGAAATTTGTTTTGAATGTCTTTTATCAACTACGTCCCCCTTTTGATCTGATTCTGGTACTTCTCTGACAACAGACTTTCCACGGCGTCGGTCTAGAGAGTCGTCAGTCTTATCTTCCTCTTTTACCTGCTTAAGTTTGCCAAACTGGTCACCGCCGGCTCGTCTCAGTACTCTTGAACCATTTGGTCTCAGCATCAGTAATCTTTGTCTTTCTTTTTCAGCTAGCTGACTCGGAGTTAGTGGCTGAGTCAATGGACTAGAAAGAAGACGAACACCCGGAGAAATTTCAATCTTATCGCAGACAAATGGATGATCCAAAAGGTCTGGCCACTGCAAACGTTGTCGTACATCTTTTTGCAACAACCTGGCCAAAAAGTCCTTAAAAACAGAGGACATATCTGGAGGCCACTGGATAGAAGTTTTTGTAATCATCTTGACGAGTTGAAAGATACTGTTCGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACAACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATAATCTCTGGCGCCATATATAGAGGAGTTCCCTTTATAGATGTCAGAACTAAAGTATTCCAGCCCATGACCCGCGCAAACCCGAAATCACAAAGCTTGACGACGCCATCTTGACCCAGCAAAATATTTTGTGGTTTCATATCTCTGTGCAAAATACGGTTGGCATGGAGGTAGTATAGTGCAGATACCAACTGACAAGCCACGGACCTAACCGTTTCTTCGGAAAGTCGGCCATCATCTTCGATTATTTGGAAAAGATCTCCTTCAGCATAATCAGTAATCGCAACTACCTCTCTTTCTGTCTCAAATGAGTCTTGCATTTCTATTATGTTGGTGTGATGCATTGATCGCATGATCTCGATTTCAAGCTTAAGATTTTAAGAGCATT] [-] EMBL CD185456 [ATCTTTTGGTGTATTATCAACCAAGGCATCGTCTTTTTCTGCAGAATGTTGTTTGATATTTGTGTTACAATGTGCCCGATGACTTAATTGCAGATACTCTCGAACTGCATTTTCGCGGTCGTAATCGGCAGATATTCGATTTTCTTTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTTGAGGTCGTCTGGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCCAGGTTAGTGTCCGCTGAATTAGGTCTTTTTACTAGTTCCTCCTGCTCCTCAATAGCCTTTGTATGTGTTCTGGGTTTTTTCACCTTTTCTCCATCA ] [+] EMBL CD156442 [ TTTTGGTGTATTATCAACCAAGGCATCGTCTTTTTCTGCAGAATGTTGTTTGATATTTGTGTTACAATGTGCCCGATGACTTAATTGCAGATACTCTCGAACTGCATTTTCGCGGTCGTAATCGGCAGATATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTTGAGGTCGTCTGGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCCAGGTTAGTGTCCGCTGAATTAGGTCTTTTTACTAGTTCCTCCTGCTCCTCAATAGCCTTTGTATGTGTTCTGGGTTTTTTCACTTTTTCTCCATCACCATATTTCAAAAAAGGGGGCCTATCTGAA ] [-] EMBL CD185547 [ TTGTTTGATATTTGTGTTACAATGTGCCCGATGACTTAATTGCAGATACTCTCGAACTGCATTTTCGCGGTCGTAATCGGCAGATATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTTGAGGTCGTCTGGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCCAGGTTAGTGTCCGCTGAATTAGGTCTTTTTACTAGTTCCTCCTGCTCCTCAATAGCCTTTGTATG ] [+] EMBL CD113451 [ TATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTCGAGGTCGTCTGGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCCAGGTTAGTGTCCGCTGAATTAGGTCTTTTTACTAGTTCCTCCTGCTCCTCAATAGCCTTTGTATGTGTTCTGGGTTTTTTCACTTTTTCTCCATCACCATATTTCAAAAAAGGGGGCCTATCTGAAATTTGTTTTGAATGTCTTTTATCAACTACGTCCCCCTTTTGATCTGATTCTGGTACTTCTCTGACAACAGACTTTCCACGGCGTCGGTCTATAGAGTCGTCAGTCTTATCTTCCTCTTTTACCTGCTTAAGTTTGCCAAACTGGTCACCGCCGGCTCGTCTCAGTACTC ] [-] EMBL CD187759 [ TTTTTCTCCATCACCATATTTCAAAAAAGGGCGCCTATCTGAAATTTGTTTTGAATGTCTTTTATCAACTACGTCCCCCTTTTGATCTGATTCTGGTACTTCTCTGACAACAGACTCTCCACGGCGTCGGTCTAGAGAGTCGTCAGTCTTATCTTCCTCTTTTACCTGC ] [+] EMBL CD193124 [ CTTCTCCGACAACAGACTTTCCACGGCGTCGGTCTAGAGAGTCGTCAGTCTTATCTTCCTCTTTTACCTGCTTAAGTTTGCCAAACTGGTCACCGCCGGCTCGTCTCAGTACTCTTGAACCATTTGGTCTCAGCATCAGTAATCTTTGTCTTTCTTTTTCAGCTAGCTGACTCGGAGTTAGTGGCTGAGTCAATGGACTAGAAAGAAGACGAACACCCGGAGAAATTTCAATCTTATCGCAGACAAATGGATGATCCAAAAGGTCTGGCCACTGCAAACGTTGTCGTACATCTTTTTGCAACAACCTGGCCAAAAAGTCCTTAAAAACAGAGGACATATCTGGAGGCCACTGGATAGAAGTTTTTGTAATCATCTTGACGAGTTGAAAGATACTGTTCGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACAACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATA ] [-] EMBL CD113424 [ TTGTC TTCTTTTTCAGCTAGCTGACTCGGAGTTAGTGGCTGAGTCAATGGACTAGAAAGAAGACGAACACCCGGAGAAATTTCAATCTTATCGCAGACAAATGGATGATCCAAAAGGTCTGGCCACTGCAAACGTTGTCGTACATCTTTTTGCAACAACCTGGCCAAAAAGTCCTTAAAAACAGAGGACATATCTGGAGGCCACTGGATAGAAGTTTTTGTAATCATCTTGACGAGTTGAAAGATACTGTTCGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATAC ACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATAACCTCTGGCGCTATATATAGAGGAGTTCCCCTTATAGATGTCAGnnntnntca ] [-] EMBL CD113384 [ AACGTTGTCGTGCATCTTTTTGCAACAACCTGGCCAAAAAGTCCTTAAAAACAGAGGACATATCTGGAGGCCACTGGATAGAAGTTTTTGTAATCATCTTGACGAGTTGAAAGATACTGTTCGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACAACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTGTTCAATAATCTATGGCGCCATATATACAGGAGTTCCCTTTATAGATGTCAGAACTAAAGTATTCCAGCCCATGACCCGCGCAAACCCGAAATCACAAAGCTTGACGACGCCATCTTGACCCAGCAAAATATTTTGTGGT ] [-] EMBL CD068461 [ GTTCGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACAACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATAATCTCTGGCGCCATATATAGAGGAGTTCCCTTTATAGATGTCAGAACTAAAGTATTCCAGCCCATGACCCGCGCAAACCCGAAATCACAAAGCTTGACGACGCCATCTTGACCCAGCAAAATATTTTGTGGTTTCATATCTCTGTGCAAAATACGGTTGGCATGGAGGTAGTATAGTGCAGATACCAACTGACAAGCCACGGACCTAACCGTTTCTTCGGAAAGTCGGCCATCATCTTCGATTATTTGGAAAAGATCTCCTTCAGCATAATCAGTAATCGCAACTACCTCTCTTTCTGTCTCAAATGAGTCTTGCATTTCTATTATGTTGGTGTGATGCATTGATCGCATGATCTCGATTTCAAGCTTAAGATTTTAAGAGCATT] consensusID : consensus_9691#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [TTGGTGTATTATCAACCAAGGCATCGTCTTTTTCTGCAGAATGTTGTTTGATATTTGTGTTACAATGTGCCCGATGACTTAATTGCAGATACTCTCGAACTGCATTTTCGCGGTCGTAATCGGCAGATATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTAGAGGTCGTCTGGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCTTTCAATCTTATCGCAGACAAATGGATGATCCAAAAGGTCTGGCCACTG] [-] EMBL CD191358 [TTGGTGTATTATCAACCAAGGCATCGTCTTTTTCTGCAGAATGTTGTTTGATATTTGTGTTACAATGTGCCCGATGACTTAATTGCAGATACTCTCGAACTGCATTTTCGCGGTCGTAATCGGCAGATATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTAGAGGTCGTCTGGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCTTTCAATCTTATCGCAGACAAATGGATGATCCAAAAGGTCTGGCCACTG] consensusID : consensus_9691#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence [CGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACAACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATAATCTCTGGCGCCATATATAGAGGAGTTCCCTACAAAAGATGGGTATTGGTAAACGGGTAAAAAAGAACCTTTATAGATGTCAGAACTAAAGTATTCCAGCCCATGACCCGCGCAAACCCGAAATCACAAAGCTTGACGACGCCATCTTGACCCAGCAAAATATTTTGTGGT] [-] EMBL CD193104 [CGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACAACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATAATCTCTGGCGCCATATATAGAGGAGTTCCCTACAAAAGATGGGTATTGGTAAACGGGTAAAAAAGAACCTTTATAGATGTCAGAACTAAAGTATTCCAGCCCATGACCCGCGCAAACCCGAAATCACAAAGCTTGACGACGCCATCTTGACCCAGCAAAATATTTTGTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9691#0 ATCTTTTGGTGTATTATCAACCAAGGCATCGTCTTTTTCTGCAGAATGTTGTTTGATATT 60 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 TGTGTTACAATGTGCCCGATGACTTAATTGCAGATACTCTCGAACTGCATTTTCGCGGTC 120 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 GTAATCGGCAGATATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAAT 180 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 TTGAGACCATTCTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTTGAGGTCGTCT 240 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 GGTAGGACAACTTTGGTTAGACAATTCGTTCCCGCCCAGGTTAGTGTCCGCTGAATTAGG 300 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 TCTTTTTACTAGTTCCTCCTGCTCCTCAATAGCCTTTGTATGTGTTCTGGGTTTTTTCAC 360 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 TTTTTCTCCATCACCATATTTCAAAAAAGGGGGCCTATCTGAAATTTGTTTTGAATGTCT 420 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 TTTATCAACTACGTCCCCCTTTTGATCTGATTCTGGTACTTCTCTGACAACAGACTTTCC 480 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 ACGGCGTCGGTCTAGAGAGTCGTCAGTCTTATCTTCCTCTTTTACCTGCTTAAGTTTGCC 540 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 AAACTGGTCACCGCCGGCTCGTCTCAGTACTCTTGAACCATTTGGTCTCAGCATCAGTAA 600 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 TCTTTGTCTTTCTTTTTCAGCTAGCTGACTCGGAGTTAGTGGCTGAGTCAATGGACTAGA 660 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 AAGAAGACGAACACCCGGAGAAATTTCAATCTTATCGCAGACAAATGGATGATCCAAAAG 720 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 GTCTGGCCACTGCAAACGTTGTCGTACATCTTTTTGCAACAACCTGGCCAAAAAGTCCTT 780 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 AAAAACAGAGGACATATCTGGAGGCCACTGGATAGAAGTTTTTGTAATCATCTTGACGAG 840 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ---------------------------------------------------TTGGTGTAT 9 consensus_9691#0 TTGAAAGATACTGTTCGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACA 900 consensus_9691#2 ---------------CGTGTAAAACGGAGGAGTACCGACGAACAGTTCGTATAATATACA 45 consensus_9691#1 TATCAACCAAGGCATCGTCTTTTTCTGCAGAATGTTGTTTGATA-TTTGTGTTACAATGT 68 *** * * * ** * * * * ** ** * * * consensus_9691#0 ACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATAATCTCTGGC-G 959 consensus_9691#2 ACCCAGTGCCCATAGGTCAGCTGTATGATCGTAAGGTTTTTCTTCAATAATCTCTGGC-G 104 consensus_9691#1 GCCCGATGACTTAATTGCAG--ATACTCTCGAACTGCATTTTCGCGGTCGTAATCGGCAG 126 *** ** * * *** ** *** * * *** * * * *** * consensus_9691#0 CCATATA------TAGAGGAGTTCCCT--------------------------------- 980 consensus_9691#2 CCATATA------TAGAGGAGTTCCCTACAAAAGATGGGTATTGGTAAACGGGTAAAAAA 158 consensus_9691#1 ATATTCGATTTTCTCTTGGAGTTGGAGGCTCAACAGTAATATCTTCAATTTGAGACCATT 186 ** * ****** consensus_9691#0 ------TTATAGATGTCAGAACTAAAGTATTCCAGCCCATGACCCGC------GCAAACC 1028 consensus_9691#2 GAACCTTTATAGATGTCAGAACTAAAGTATTCCAGCCCATGACCCGC------GCAAACC 212 consensus_9691#1 CTGAGGTTTTCTTTTTGGATCCTAAGGCATCACAACTTAGAGGTCGTCTGGTAGGACAAC 246 ** * * * **** * ** ** * * ** * * * * consensus_9691#0 CGAAATCACAAAGCTTGACGACGCCATCTTGACCCA--GCAAAATATTTTGTGGTTTCAT 1086 consensus_9691#2 CGAAATCACAAAGCTTGACGACGCCATCTTGACCCA--GCAAAATATTTTGTGGT----- 265 consensus_9691#1 TTTGGTTAGACAATTCGTTCCCGCCTTTCAATCTTATCGCAGACAAATGGATGATCCAAA 306 * * * * * * **** * * * *** * * * ** * consensus_9691#0 ATCTCTGTGCAAAATACGGTTGGCATGGAGGTAGTATAGTGCAGATACCAACTGACAAGC 1146 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 AGGTCTGGCCACTG---------------------------------------------- 320 consensus_9691#0 CACGGACCTAACCGTTTCTTCGGAAAGTCGGCCATCATCTTCGATTATTTGGAAAAGATC 1206 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 TCCTTCAGCATAATCAGTAATCGCAACTACCTCTCTTTCTGTCTCAAATGAGTCTTGCAT 1266 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 TTCTATTATGTTGGTGTGATGCATTGATCGCATGATCTCGATTTCAAGCTTAAGATTTTA 1326 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 AGAGCATT 1334 consensus_9691#2 -------- consensus_9691#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||