|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9705#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1051 fasta sequence
[GAGGCTCTGAGTTGTCGCAGTGGAGGTTCTCAAGTTTCTCTTATCAATATCATGATGGACCTCAAGAAGTGTTGCAATCACCCTTTCCTTTTTCCATCTGCGGCTGAGGAGGCACAGCGTATGCCCAATGGTGCTTATGAAGGTGTCGGACTACGGAAAGGCTCTGGGAAACTGGAACTTATGAGCAAAATGCTGCGCAAATTGTATGAAACAAAACACCGTGTGTTGATTTTCTCTCAAATGACTAAGATGTTAGACCTGTTAGAGGACTTTTTAGATTCTGAAGGTTATAAATTTGAAAGGATCGATGGTGCAGTTACAGGACAGCTTCGTCAAGATGCTATAGACCGTTTTAATGCCCCTGATTCTCTCTCCTTTGCGTTTTTATTATCCACCAGGGCAGGAGGTCTAGGCATAAATTTAGCCTCCGCAGATACAGTCATCATATATGATTCCGATTGGAACCCACATAATGACATCCAAGCATTTTCTCGTGCCCATCGTATCGGTCAGTCCAATAAAGTTATGATTTATCGGTTTGTTACTCGTGGAACAGTTGAAGAACGTGTTACACAAGTAGCTAAAAAGAAAATGATGCTGACTCATTTAGTTGTTCGTCCTGGTTTAGGCGGTAAAGGTTCATGTCAAATGTCCAAAAAAGAACTGGATGATATTCTTAAATTTGGAACTGAAGATCTGTTCAAGGAAGGCGAAGAGAGCATGGAAGATGAACACACTATCGTTTATGATGATGCTGCTATTGAGCGTTTATTGGATCGTAGCCAGCAAGGGTTAGAAGAAAAAGCTTTAGAAATGAACGACTATCTAACCTCCTTCAAAGTTGCTCATTATGAAAAGAAAAGAGTTATTGAAGAAGAAGATGATGAATCGGAGGATGAAGATGAAAATCGTGAAGTTATCAAACAGGAACTTGATCCAGCAGATCCAACGTATTGGGAAAAGTTATTGCGCCATCACTTCGAACAAGCTCAAGAAGATCAAGCTCGAGCTCTTGGGAAAGGTAAAAGGGTTCGAAAACAAGTTAACTACT]
[-] EMBL CD196208 [GAGGCTCTGAGTTGTCGCAGTGGAGGTTCTCAAGTTTCTCTTATCAATATCATGATGGACCTCAAGAAGTGTTGCAATCACCCTTTCCTTTTTCCATCTGCGGCTGAGGAGGCACAGCGTATGCCCAATGGTGCTTATGAAGGTGTCGGACTACGGAAAGGCTCTGGGAAACTGGAACTTATGAGCAAAATGCTGCGCAAATTGTATGAAACAAAACACCGTGTGTTGATTTTCTCTCAAATGACTAAGATGTTAGACCTGTTAGAGGACTTTTTAGATTCTGAAGG ]
[+] EMBL CD113483 [ AATGGTGCTTATGAAGGTGTCGGACTACGGAAAGGCTCTGGGAAACTGGAACTTATGAGCAAAATGCTGCGCAAATTGTATGAAACAAAACACCGTGTGTTGATTTTCTCTCAAATGACTAAGATGTTAGACCTGTTAGAGGAGTTTTTAGATTCTGAAGGTTATAAATTTGAAAGGATCGATGGTGCAGTTACAGGACAGCTTCGTCAAGATGCTATAGACCGTTTTAATGCCCCTGATTCTCTCTCCTTTGCGTTTTTATTATCCACCAGGGCAGGAGGTCTAGGCATAAATTTAGCCTCCGCAGATACAGTCATCATATATGATTCCGATTGGAACCCACATAATGACATCCAAGCATTTTCTCGTGCCCATCGTATCGGTCAGTCCAATAAAGTTATGATTTATCGGTTTGTTACTCGTGGAACAGTTGAAGAACGTGTTACACAAGTAGCTAAAAAGAAAATGATGCTGACTCATTTAGTTGTTCGTCCTGGTTTAGGCGGTAAAGGTTCATGTCAAATGTCCAAAAAAGAACTGGATGATATTCTTAAATTTGG ]
[+] EMBL CD088156 [ TCATGTCAAATGTCCAAAAAAGAACTGGATGATATTCTTAAATTTGGAACTGAAGATCTGTTCAAGGAAGGCGAAGAGAGCATGGAAGATGAACACACTATCGTTTATGATGATGCTGCTATTGAGCGTTTATTGGATCGTAGCCAGCAAGGGTTAGAAGAAAAAGCTTTAGAAATGAACGACTATCTAACCTCCTTCAAAGTTGCTCATTATGAAAAGAAAAGAGTTATTGAAGAAGAAGATGATGAATCGGAGGATGAAGATGAAAATCGTGAAGTTATCAAACAGGAACTTGATCCAGCAGATCCAACGTATTGGGAAAAGTTATTGCGCCATCACTTCGAACAAGCTCAAGAAGATCAAGCTCGAGCTCTTGGGAAAGGTAAAAGGGTTCGAAAACAAGTTAACTACT]
[+] EMBL CD088146 [ TCATGTCAAATGTCCAAAAAAGAACTGGATGATATTCTTAAATTTGGAACTGAAGATCTGTTCAAGGAAGGCGAAGAGAGCATGGAAGATGAACACACTATCGTTTATGATGATGCTGCTATTGAGCGTTTATTGGATCGTAGCCAGCAAGGGTTAGAAGAAAAAGCTTTAGAAATGAACGACTATCTAACCTCCTTCAAAGTTGCTCATTATGAAAAGAAAGGAGTTATTGAAGAAGAAGATGATGAATCGGAGGATGAAGATGAAAATCGTGAAGTTATCAAACAGGAACTTGATCCAGCAGATCCAACGTATTGGGAAAAGTTATTGCGCCATCACTTCGAACAAGCTCAAGAAGATCAAGCTCGAGCTCTTGGGAAAGGTAAAAGGGTTCGAAAACAAGTTAATTACT]
[+] EMBL CD088161 [ TCATGTCAAATGTCCAAAAACGAACTGGACGATATTCTTAAATTTGGAACTGAAGATCTGCTCAAGGATCGCGAAGAGAGCATGGAAGATGAACACACTATCGCTTATGATGATGCTGCTATTGAGCGCTTATTGGATCGTAGCCAGTAAGGGTTAGAAGAAGAAGCTTTAGAAATGAACGACTATC ]
consensusID : consensus_9705#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 847 fasta sequence
[GAGGCCATAATTCGGCACGAGGGTCATTGTCGTGGTCCTTTCCTTGTTGCCGCTCCACTCTCAACAATTATTAACTGGGAGCGTGAATTCGAGTTTTGGGCTCCAGATCTTTATGTAGTCTCTTACATTGGCGATAAAGACTCACGAACAGTTATAAGAGAGCACGAATTCTCATTCGATGAGGGTGCTGTCCGTGGTGGTGCTAAAGCTATGAAAATGAGAACCGGTACTTCAGTCAGATTTCATGTACTTTTAACAAGTTATGAGTTAATTAGTATTGATCAAGCTTTACTAGGCTCCATAGATTGGGAAGTTCTTGTTGTAGATGAGGCTCATCGACTAAAAAATAATCAGTCAAAGTTTTTCCGTATCTTAACAACCTATAAAATTGGATATAAGTTATTGCTAACAGGAACTCCTCTTCAAAATAATCTAGAAGAACTTTTCCACCTACTACATTTTATGACCCCTGAGAAGTTCAACGATATGCAAGGATTCTTAGATGAGTTCGCTGATATATCAAAAGAAGAACAAGTAAAAAAACTTCACGATATGCTTGGTCAGCACTTA--CTTAGGCGTCTTAAGGCTGATGTGCTACAGGACATGCCATCCAAAGGTGAATTCATCGTCAGAGTAGAGCTTAGTCCTATGCAAAAGCGTTACTATAAATTTATACTTACTCGTAACTTCGAGGCTCTGAGTTGTCGCAGTGGAGGTTCTCAAGTTTCTCTTA-TCAATATCATGATGGACCTCAAGAAGTGTTGCAATCACCCTTTCCTTTTTCCATCTGCGGCTGAGGAGGCACAGCGTATGCCCAATGGTTAAATGAACAGCGTGCGTTATAAAA]
[+] EMBL CD081700 [GAGGCCATAATTCGGCACGAGGGTCATTGTCGTGGTCCTTTCCTTGTTGCCGCTCCACTCTCAACAATTATTAACTGGGAGCGTGAATTCGAGTTTTGGGCTCCAGATCTTTATGTAGTCTCTTACATTGGCGATAAAGACTCACGAACAGTTATAAGAGAGCACGAATTCTCATTCGATGAGGGTGCTGTCCGTGGTGGTGCTAAAGCTATGAAAATGAGAACCGGTACTTCAGTCAGATTTCATGTACTTTTAACAAGTTATGAGTTAATTAGTATTGATCAAGCTTTACTAGGCTCCATAGATTGGGAAGTTCTTGTTGTAGATGAGGCTCATCGACTAAAAAATAATCAGTCAAAGTTTTTCCGTATCTTAACAACCTATAAAATTGGATATAAGTTATTGCTAACAGGAACTCCTCTTCAAAATAATCTAGAAGAACTTTTCCACCTACTACATTTTATGACCCCTGAGAAGTTCAACGATATGCAAGGATTCTTAGATGAGTTCGCTGATATATCAAAAGAAGAACAAGTAAAAAAACTTCACGATATGCTTGGTCAGCACTTA CTTAGGCGTCTTAAGGCTGATGTGCTACAGGACATGCCATCCAAAGGTGAATTCATCGTCAGAGTAGAGCTTAGTCCTATGCAAAAGCGTTACTATAAATTTATACTTACTCGTAACTTCGAGGCTCTGAGTTGTCGCAGTGGAGGTTCTCAAGTTTCTCTTA TCAATATCATGATGGACCTCAAGAAGTGTTGCAATCACCCTTTCCTTTTTCCATCTGCGGCTGAGGAGGCACAGCGTATGCCCAATGGTTAAATGAACAGCGTGCGTTATAAAA]
[+] EMBL BG930927 [ GAGGGTGCTGTCCGTGGTGGTGCTAAAGCTATAAAAATGAGAACCGGTACTTCAGTCAGATTTCATGTACTTTTAACAAGTTATGAGTTAATTAGTATTGATCAAGCTTTACTAGGCTCCATAGATTGGGAAGTTCTTGTTGTAGATGAGGCTCATCGACTAAAAAATAATCAGTCAAAGTTTTTCCGTATCTTAACAACCTATAAAATTGGATATAAGTTATTGCTAACAGGAACTCCTCTTCAAAATAATCTAGAAGAACTTTTCCACCTACTACATTTTATGACCCCTGAGAAGTTCAACGATATGCAAGGATTCTTAGATGAGTTCGCTGATATATCAAAAGAAGAACAAGTAAAAAAACTTCACGATATGCTTGGTCAGCACTTA CTTAGGCGTCTTAAGGCTGATGTGCTACAGa ]
[+] EMBL CD130643 [ TACTTCAGTCAGATTTCATGTACTTTTAACAAGTTATGAGTTAATTAGTATTGATCAAGCTTTACTAGGCTCCATAAATTGGGAAGTTCTTGTTGTAGATGAGGCTCATCGACTAAAAAATAATCAGTCAAAGTTTTTCCGTATCTTAACAACCTATAAAATTGGATATAAGTTATTGCTAACAGGAACTCCTCTTCAAAATAATCTAGAAGAACTTTTCCACCTACTACATTTTATGACCCCTGAGAAGTTCAACGATATGCAAGGATTCTTAGATGAGTTCGCTGATATATCAAAAGAAGAACAAGTAAAAAAACTTCACGATATGCTTGGTCAGCACTTACNCTTAGGCGTCTTAAGGCTGATATGCTACAGGACATGCCATCCAAAGGTGAATTCATCGTCAGAGTAGAGCTTAGTCCTATGCAAAAGCGTTACTATAAATTTATACTTACTCGNTACTTCGNAGCTCTGAGTTGTCGCAGTGGAGGTTCTCAAGTTTCTCTTATTNAATATCATG ]
[+] EMBL CD063212 [ TTCAGTCAGATTTCATGTACTTTTAACAAGTTATGAGTTAATTAGTATTGATCAAGCTTTACTAGGCTCCATAGATTGGGAAGTTCTTGTTGTAGATGAGGCTCATCGACTAAAAAATAATCAGTCAAAGTTTTTCCGTATCTTAACAACCTATAAAATTGGATATAAGTTATTGCTAACAGGAACTCCTCTTCAAAATAATCTAAAAGAACTTTTCCACCTACTACATTTTATGACCCCTGAG ]
consensusID : consensus_9705#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 536 fasta sequence
[GTTCTGCTATGATTATTTGAAGAGGAGTTCCTGTTAGCAATAACTTATATCCAATTTTATAGGTTGTTAAGATACGGAAAAACTTTGACTGATTATTTTTTAGTCGATGAGCCTCATCTACAACAAGAACTTCCCAATCTATGGAGCCTAGTAAAGCTTGATCAATACTAATTAACTCATAACTTGTTAAAAGTACATGAAATCTGACTGAAGTACCGGTTCTCATTTTCATAGCTTTAGCACCACCACGGACAGCACCCTCATCGAATGAGAATTCGTGCTCTCTTATAACTGTTCGTGAGTCTTTATCGCCAATGTAAGAGACTACATAAAGATCTGGAGCCCAAAACTCGAATTCACGCTCCCAGTTAATAATTGTTGAGAGTGGAGCGGCAACAAGGAAAGGACCACGACAATGACCTTCTTTGTACAGAGAATAAAGGAAAGCAATTGTTTGGATCGTTTTCCCCAAACCCATCTCATCAGCTAAGATTGTGTCGATTTTGTTACCGAAGGAAAACCTAAGCCAATTGACA]
[+] EMBL CD068185 [GTTCTGCTATGATTATTTGAAGAGGAGTTCCTGTTAGCAATAACTTATATCCAATTTTATAGGTTGTTAAGATACGGAAAAACTTTGACTGATTATTTTTTAGTCGATGAGCCTCATCTACAACAAGAACTTCCCAATCTATGGAGCCTAGTAAAGCTTGATCAATACTAATTAACTCATAACTTGTTAAAAGTACATGAAATCTGACTGAAGTACCGGTTCTCATTTTCATAGCTTTAGCACCACCACGGACAGCACCCTCATCGAATGAGAATTCGTGCTCTCTTATAACTGTTCGTGAGTCTTTATCGCCAATGTAAGAGACTACATAAAGATCTGGAGCCCAAAACTCGAATTCACGCTCCCAGTTAATAATTGTTGAGAGTGGAGCGGCAACAAGGAAAGGACCACGACAATGACCTTCTTTGTACAGAGAATAAAGGAAAGCAATTGTTTGGATCG ]
[+] EMBL CD188041 [ GGTTCTCATTTTCATAGCTTTAGCACCACCACGGACAGCACCCTCATCGAATGAGAATTCGTGCTCTCTTATAACTGTTCGTGAGTCTTTATCGCCAATGTAAGAGACTACATAAAGATCTGGAGCCCAAAACTCGAATTCACGCTCCCAGTTAATAATTGTTGAGAGTGGAGCGGCAACAAGGAAAGGACCACGACAATGACCTTCTTTGTACAGAGAATAAAGGAAAGCAATTGTTTGGATCGTTTTCCCCAAACCCATCTCATCAGCTAAGATTGTGTCGATTTTGTTACCGAAGGAAAACCTAAGCCAATTGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9705#0 GAGGCTCTGAGTTGTCGCAGTGGAGGTTCTCAAGTTTCTCTTATCAATATCATGATGGAC 60
consensus_9705#1 ---------------------------------------------GAGGCCATAATTCGG 15
consensus_9705#2 ------------------------------------------------------------
consensus_9705#0 CTCAAGAAGTGTTGCAATCACCCTTTCCTTTTTCCATCTGCGGCTGAGGAGGCACAGCGT 120
consensus_9705#1 CACGAGGGTCATTGTCGTGGTCCTTTCCTTGTTGCCGCTCCACTCTCA-----ACAATTA 70
consensus_9705#2 ------------------------------------------------------------
consensus_9705#0 ATGCCCAATGGTGCTTATGAAGGTGTCGGACTACGGAAAGGCTCTGGGAAACTGGAACTT 180
consensus_9705#1 TTAACTGGGAGCGTGAATTCGAGTTTTGGGCTCCAGATC--TTTATGTAGTCTCTTACAT 128
consensus_9705#2 ------------------------------------------------------------
consensus_9705#0 ATGAGCAAAATGCTGCGCAAATTGTATGAAACAAAACACCGTGTGTTGATTTTCTCTCAA 240
consensus_9705#1 TGGCGATAAAGACT-CACGAACAGT-TATAAGAGAGCAC--------GAATT---CTCAT 175
consensus_9705#2 ------------------------------------------------------------
consensus_9705#0 ATGACTAAGATGTTAGACCTGTTAGAGGACTTTTTAGATTCTGAAGGTTATAAATTTGAA 300
consensus_9705#1 TCGATGAGGGTGCTGTCCGTGGTGGTG--------------CTAAAGCTATGAAAATG-- 219
consensus_9705#2 -----------------------------------------GTTCTGCTATGATTATT-- 17
* *** * *
consensus_9705#0 AGGATCGATGGTGCAGTTACAGGACA-GCTTCGTCAAGATGCTATAGACCGTTT--TAAT 357
consensus_9705#1 AGAACCGGTACTTCAGTCAGATTTCATGTACTTTTAACAAGTTATGAGTTAATTAGTATT 279
consensus_9705#2 TGAAGAGGAGTTCCTGTTAGCAATAACTTATATCCAA--TTTTATAGGTTGTTAAGATAC 75
* * * * * ** * * ** *** *
consensus_9705#0 GCCCCTGATTCTCTCTCCTTTGCGTTTTTATTATCCACCAGGGCAGGAGGTCTAGGCATA 417
consensus_9705#1 GATCAAGCTTTACTAGGCTCCATAGATTGGGAAGTTCTTGTTGTAGATG----AGGCTCA 335
consensus_9705#2 GGAAAAACTTT-------------GACTGATTATTTTTTA--GTCGATG----AGCCTCA 116
* ** * * * * * ** * *
consensus_9705#0 AATTTAGCCTCCGCAGATACAGTCATCATATATGATTCCGATTGGAACCCACATAATGAC 477
consensus_9705#1 ---TCGACTAAAAAATAATCAGTCAAAGTTTTTCCGTATCTTAACAACCTATAAAATTGG 392
consensus_9705#2 ------TCTACAACAAGAACT-TCCCAATCTATGGAGCCTAGTAAAGCTTGATCAATACT 169
* * * ** * * * * * ***
consensus_9705#0 ATCCAAGCATTTTCTCGTGCCCATCGTATCGGTCAGTCCAATAAAGTTATGATTTATCGG 537
consensus_9705#1 ATATAAGTTATTGCTAACAGGAAC--TCCTCTTCAAAATAATCTAGA-AGAACTTTTCCA 449
consensus_9705#2 AATTAACTCATAACTTGTTAAAAG---TACATGAAATCTGACTGAAGTACCGGTTCTCAT 226
* ** * ** * * * * * ** **
consensus_9705#0 TTTGTTAC-TCGTGGAACAGTTGAAGAACGTGTTACACAAGTAGCTAAAAAGAAAATGAT 596
consensus_9705#1 CCTACTACATTTTATGACCCCTGAGAA----GTT---CAACGATATGCAAGGATTCTTAG 502
consensus_9705#2 TTTCATAG-CTTTAGCACCACCACGGA----------CAGCACCCTCATCGAATGAGAAT 275
* ** * ** * ** * * *
consensus_9705#0 GCTGACTCATTTAGTTGTTCGTCCTGGTTTAGGCGGTAAAGGTTCATGTCAAATGTCCAA 656
consensus_9705#1 ATGAGTTCGCTGATATATCAAAAGAAGAACAAGTAAAAAAACTTCACG--ATATGCTTGG 560
consensus_9705#2 TCGTGCTCTCTTATA-------------ACTGTTCGTGAGTCTTTATCGCCAATGT---- 318
** * * * ** * ***
consensus_9705#0 AAAAGAACTGGATGATATTCTTAAATTTG--GAACTG-AAGATCTGTTCAAGGAAGGCGA 713
consensus_9705#1 TCAGCACTTACTTAGGCGTCTTAAGGCTGATGTGCTACAGGACATGCCATCCAAAGGTGA 620
consensus_9705#2 -AAGAGACTACATAAAGATCTGGAGCCCA--AAACTCGAATTCACGCTCCC----AGTTA 371
* * * *** * ** * * * *
consensus_9705#0 AGAGAGCATGGAAGATGAACACACTATCGTTTATGATGATGCTGCTATTGAGCGTTTATT 773
consensus_9705#1 ATTCATCGTCAGAGTAGAGCTTA--GTCCTATGCAAAAGCGTTACTAT-AAATTTATACT 677
consensus_9705#2 ATAATTGTTGAGAGTGGAGC-----GGCAACAAGGAAAGGACCACGACAATGACCTTCTT 426
* * ** ** * * * * * * *
consensus_9705#0 GGATCGTAGCCAGCAAGGGTTAGAAGAAAAAGCTTTAGAAATGAACGACTATCTAACCTC 833
consensus_9705#1 TACTCGTAACTT-CGAGGCTCTGA-------GTTGTCGCAGTGGA-GGTTCTCAAGTTTC 728
consensus_9705#2 TGTACAGAGAATAAAGGAAAGCAA--------TTGTTTGGATCGT-TTTCCCCAAACCCA 477
* * * * * * * * *
consensus_9705#0 CTTCAAAGTTGCTCATTATGAAAAGAAAAGAGTTATTGAAGAAGAAGATGATGA----AT 889
consensus_9705#1 TCTTATCAATA-TCATGATGGACCTCAAGAAGTGTTGCAATCACCCTTTCCTTTTTCCAT 787
consensus_9705#2 TCTCATCAGC---TAAGATTGTGTCGATTTTGTTACCGAAGGAAAACCTAAGCCA---AT 531
* * * ** * ** ** * * **
consensus_9705#0 CGGAGGATGAAGATGAAAATCGTGAAGTTATCAAACAGGAACTTGATCCAGCAGATCCAA 949
consensus_9705#1 CTGCGGCTGAGGAGGCACAGCGTA----TGCCCAATGG----TTAAATGAACAG----CG 835
consensus_9705#2 TGACA------------------------------------------------------- 536
consensus_9705#0 CGTATTGGGAAAAGTTATTGCGCCATCACTTCGAACAAGCTCAAGAAGATCAAGCTCGAG 1009
consensus_9705#1 TGCGTTATAAAA------------------------------------------------ 847
consensus_9705#2 ------------------------------------------------------------
consensus_9705#0 CTCTTGGGAAAGGTAAAAGGGTTCGAAAACAAGTTAACTACT 1051
consensus_9705#1 ------------------------------------------
consensus_9705#2 ------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||