These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9707#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1207 fasta sequence [CGGAGCCATNAATTCGGCACGAGGGTGAAATTACAAAGAGAAAATGTATTCAGAGGTGAACGCGTGTTCTTGCCTAATCCACGAACTATTTATGGTGGTGAGCTCATGGCTCAAGCTTTAATGGCTGCTAGTAAAACCGTTTCTAAAGATTTCAGACCGAATAGCTTGCACTGTTATTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGATGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTCATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACATTATCAAAGTTTCGATGCTAATTCACCTCTTGAAACCGTATTCTGTGAACCCGAATATGTTCTCGGCCTCAAGTCAAATGTTGGTGGACAACTACACTCTTGGATCCGTTTAAAGGAACCACCTTCCACTTCTCTACATTCTTATCGTGATGCCTTCCTAGCGTATTTATCGGATGCTTTTTTGTTATGGGTCGCACTTACTGAACCACATCATGTTTTATACTTGGTCACGCTAAATCAAAGCATATGGTTTCACAATCCCGAAATAGAGATTAAGCCAGATGAATGGATTTTGCTTGGAACAAGAGCAAATTACGTAGGTGGCGCTTTGACACTTTCATATGGAGACATATGGAACAGAGAAGGCTGTCTCCTGGCAAGCATGGCTCAACAAGGCTTAGTGCGGACTCAACAACTGAAGCCAGTCTCATCCTACACATCAATGGGTGAACTAGCGGAACAAGCCGAAAAATAATCCTACACCGATATAAACACCTGACTTAAACAAATTGTATTACCTTTTTGTATATCTTAA-TTTCTGTCATGGACATATATATCTAT-GCAACATTCCTCAGCATATAAGGAAGTCTCTTGACATTATGTTTTAGTTATATCTTACTCTTTAACTATGGTTATGACATCTGAGCTGTGATTCTCTGATTAGCATGTCTGCAATATTTTCTTCATATTTGTTATTCACTACTAAATTACGATGAATTGAAAAAAAAAAA] [+] EMBL CD081634 [CGGAGCCATNAATTCGGCACGAGGGTGAAATTACAAAGAGAAAATGTATTCAGAGGTGAACGCGTGTTCTTGCCTAATCCACGAACTATTTATGGTGGTGAGCTCATGGCTCAAGCTTTAATGGCTGCTAGTAAAACCGTTTCTAAAGATTTCAGACCGAATAGCTTGCACTGTTATTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGATGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTCATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACATTATCAAAGTTTCGATGCTAATTCACCTCTTGAAACCGTATTCTGTGAACCCGAATATGTTCTCGGCCTCAAGTCAAATGTTGGTGGACAACTACACTCTTGGATCCGTTTAAAGGAACCACCTTCCACTTCTCTACATTCTTATCGTGATGCCTTCCTAGCGTATTTATCGGATGCTTTTTTGTTATGGGTCGCACTTACTGAACCACATCATGTTTTATACTTGGTCACGCTAAATCAAAGCATATGGTTTCACAATCCCGAAATAGAGATTAAGCCAGATGAATGGATTTTGCTTGGAACAAGAGCAAATTA ] [+] EMBL CD081860 [ tcGAAATTACAAAGAGAAAATGTATTCAGAGGTGAACGCGTGTTCTTGCCTAATCCACGAACTATTTATGGTGGTGAGCTCATGGCTCAAGCTTTAATGGCTGCTAGTAAAACCGTTTCTAAAGATTTCAGACCGAATAGCTTGCACTGTTATTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGATGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTCATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACATTATCAAAGTTTCGATGCTAATTCACCTCTTGAAACCGTATTCTGTGAACCCGAATATGTTCTCGGCCTCAAGTCAAATGTTGGTGGACAACTACACTCTTGGATCCGTTTAAAGGAACCACCTTCCACTTCTCTACATTCTTATCGTGATGCCTTCCTAGCGTATTTATCGGATGCTTTTTTGTTATGGGTCGCACTTACTG ACCACATCATGTTNTAT ] [+] EMBL CD078379 [ GCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTCATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACATTATCAAAGTTTCGATGCTAATTCACCTCTTGAAACCGTATTCTGTGAACCCGAATATGTTCTCGGCCTCAAGTCAAATGTTGGTGGACAACTACACTCTTGGATCCGTTTAAAGGAACCACCTTCCACTTCTCTACATTCTTATCGTGATGCCTTCCTAGCGTATTTATCGGATGCTTTTTTGTTATGGGCCGCACTTAC ] [+] EMBL CD078292 [ GCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTCATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACATTATCAAAGTTTCGATGCTAATTCACCTCTTGAAACCGTATTCTGTGAACCCGAATATGTTCTCGGCCTCAAGTCAAATGTTGGTGGACAACTACACTCTTGGATCCGTTTAAAGGAACCACCTTCCACTTCTCTACATTCTTATCGTGATGCCTTCCTAGCGTATTTATCGGATGCTTTTTTGTTATGGGTCGCACTTACTGAACCACATCATGTTTTATACTTGGTCACGCTAAATCAAAGCATATGGTTTCACAATCCCGAAATAGAGATTAAGCCAGATGAATGGATTTTGCTTGGAACAAGAGCANATTACGTAGGTGGCGCTTTGACACTTTCATATGGAGACATATGGAACAGAGAAGG ] [-] EMBL CD075456 [ CTNTACATTCTTATCGTGATGCCTTCCTAGCGTATTTATCGGATGCTTTTTTGTTATGGGTCGCACTTACTGAACCACATCATGTTTTATACTTGGTCACGCTAAATCAAAGCATATGGTTTCACAATCCCGAAATAGAGATTAAGCCAGATGAATGGATTTTGCTTGGAACAAGAGCAAATTACGTAGGTGGCGCTTTGACACTTTCATATGGAGACATATGGAACAGAGAAGGCTGTCTCCTGGCAAGCATGGCTCAACAAGGCTTAGTGCGGACTCAACAACTGAAGCCAGTCTCATCCTACACATCAATGGGTGAACTAGCGGAACAAGCCGAAAAATAATCCTACACCGATATAAACACCTGACTTAAACAAATTGTATTACCTTTTTGTATATCTTAA TTTCTGTCATGGACATATATATCTAT GCAACATTCCTCAGCATATAAGGAAGTCTCTTGACATTATGTTTTAGTTATATCTTACTCTTTAACTATGGTTATGACATCTGAGCTGTGATTCTCTGATTAGCATGTCTGCAATATTTTCTTCATATTTGTTATTCACTACTAAATTAC ] [-] EMBL AI395311 [ GTA GTGGCCCTTTGACACTTTCATATGGAGACATATGGAACAGAGAA GCTGTCTCCTGGCAAGCATGGCTCAACAAGGCTTAGTGCGGACTCAACAACTGAAGCCAGTCTCATCCTACACATCAATGGGTGAACTAGCGGAACAAGCCGAAAAATAATCCTACACCGATATAAACACCTGACTTAAACAAATTGTATTACCTTTTTGTATATCTTAA TTTCTGTCATGGACATATATATCTAT GCAACATTCCTCAGCATATAAGGAAGTCTCTTGACATTATGTTTTAGTTATATCTTACTCTTTAACTATGGTTATGACATCTGAGCTGTGATTCTCTGATTAGCATGTCTGCAATATTTTCTTCATATTTGTTATTCACTACTAAATTACGATGAATTGAAAAAAAAAAA] [-] EMBL CD075574 [ ACAAGCCGAAAAATAATCCTACACCGATATAAACACCTGACTTAAACAAATTGTATTACCTTTTTGTATATCTTAA TTTCTGTCATGGACATATATATCTAT GCAACATTCCTCAGCATATAAGGAAGTCTCTTGACATTATGTTTTAGTTATATCTTACTCTTTAACTATGGTTATGACATCTGAGCTGTGATTCTCTGATTAGCATGTCTGCAATATTTTCTTCATATTTGTTATTCACTACTAAATTAC ] [-] EMBL AI395830 [ TGGATATCCTAATTTTCTGTCATGGACATATATATCTAT GCAACATTCCTCAGCATATAAGGAAGTCTCTTGACATTATGTTTTAGTTATATCTTACTCTTTAACTATGGTTATGACATCTGAGCTGTGATTCTCTGATTAGCATGTCTGCAATATTTTCTTCATATTTGTTATTCACTACTAACTTACGATGAATTGAAAAAAAAAAA] [-] EMBL CD072940 [ CATGGGCATATATATCTATCGCAGCATTCCTCAGCAAATAAGGAAGTCTCTTGACAGTATGTTTTAGTTATATCTTGCTCTTTAACTATGGGTAAGACATCTGAGCTGTGATTCTCTGCTTAGCATGTCTGCAATATTTTCTTCATATTTGTTATTCACTACTAAATTTCG ] consensusID : consensus_9707#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 574 fasta sequence [TTTACTCTTGTGATTTGTTGCATGCTTTTGAATATTCCTACCAGGAACAATGAATATTGGTGATAAATTTATAACGAAATTGTTAGATATGAAATTACAAAGAGAAAATGTATTCAGAGGTGAACGCGTGTTCTTGCCTAATCCACGAACTATTTATGGTGGTGAGCTCATGGCTCAAGCTTTAATGGCTGCTAGTAAAACCGTTTCTAAAGATTTCAGACCGAATAGCTTGCACTGTTATTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGATGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTCATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACATTATCAAAGTTTCGATGCTAATTCACCTCTTGAA] [+] EMBL AI977217 [TTTACTCTTGTGATTTGTTGCATGCTTTTGAATATTCCTACCAGGAACAATGAATATTGGTGATAAATTTATAACGAAATTGTTAGATATGAAATTACAAAGAGAAAATGTATTCAGAGGTGAACGCGTGTTCTTGCCTAATCCACGAACTATTTATGGTGGTGAGCTCATGGCTCAAGCTTTAATGGCTGCTAGTAAAACCGTTTCTAAAGATTTCAGACCGAATAGCTTGCACTGTTATTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGATGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTCATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACATTATCAAAGTTTCGATGCTAATTCACCTCTTGAA] [+] EMBL CD077633 [ TTTCAGACCGAATAGCTTGCACTGTTATTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGATGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGATTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGCATCCTTTTTGTCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9707#0 -------------------------------------------------------CGGAG 5 consensus_9707#1 TTTACTCTTGTGATTTGTTGCATGCTTTTGAATATTCCTACCAGGAACAATGAATATTGG 60 * consensus_9707#0 CCATNAATTCGGCACGAGG---------GTGAAATTACAAAGAGAAAATGTATTCAGAGG 56 consensus_9707#1 TGATAAATTTATAACGAAATTGTTAGATATGAAATTACAAAGAGAAAATGTATTCAGAGG 120 ** **** **** ******************************* consensus_9707#0 TGAACGCGTGTTCTTGCCTAATCCACGAACTATTTATGGTGGTGAGCTCATGGCTCAAGC 116 consensus_9707#1 TGAACGCGTGTTCTTGCCTAATCCACGAACTATTTATGGTGGTGAGCTCATGGCTCAAGC 180 ************************************************************ consensus_9707#0 TTTAATGGCTGCTAGTAAAACCGTTTCTAAAGATTTCAGACCGAATAGCTTGCACTGTTA 176 consensus_9707#1 TTTAATGGCTGCTAGTAAAACCGTTTCTAAAGATTTCAGACCGAATAGCTTGCACTGTTA 240 ************************************************************ consensus_9707#0 TTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGA 236 consensus_9707#1 TTTTCATGACCGATCAAATGTACTTGAACCAAATGATTACCATGTTACAAAACTTCGTGA 300 ************************************************************ consensus_9707#0 TGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGA 296 consensus_9707#1 TGGACGTTCATTTTGTCATAGATTAGTTGAAGCTTTTCCAATAAATAAAAGTGAATCGGA 360 ************************************************************ consensus_9707#0 TTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGC 356 consensus_9707#1 TTTAATTGCTCCATATTTTCGCATGGATTGTTCATTTAAAACACCCGAGAAGGATCCTGC 420 ************************************************************ consensus_9707#0 ATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTC 416 consensus_9707#1 ATCCTTTTTGTCTCCCATGCCTCATGTTCAGTCTGTTGAGAAACTCCAAGATTTTAATTC 480 ************************************************************ consensus_9707#0 ATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACA 476 consensus_9707#1 ATATGTGAAATCACTTGACTTTGACAACTTGCCAAATGTACCACGAACTCGGGTACTACA 540 ************************************************************ consensus_9707#0 TTATCAAAGTTTCGATGCTAATTCACCTCTTGAAACCGTATTCTGTGAACCCGAATATGT 536 consensus_9707#1 TTATCAAAGTTTCGATGCTAATTCACCTCTTGAA-------------------------- 574 ********************************** consensus_9707#0 TCTCGGCCTCAAGTCAAATGTTGGTGGACAACTACACTCTTGGATCCGTTTAAAGGAACC 596 consensus_9707#1 ------------------------------------------------------------ consensus_9707#0 ACCTTCCACTTCTCTACATTCTTATCGTGATGCCTTCCTAGCGTATTTATCGGATGCTTT 656 consensus_9707#1 ------------------------------------------------------------ consensus_9707#0 TTTGTTATGGGTCGCACTTACTGAACCACATCATGTTTTATACTTGGTCACGCTAAATCA 716 consensus_9707#1 ------------------------------------------------------------ consensus_9707#0 AAGCATATGGTTTCACAATCCCGAAATAGAGATTAAGCCAGATGAATGGATTTTGCTTGG 776 consensus_9707#1 ------------------------------------------------------------ consensus_9707#0 AACAAGAGCAAATTACGTAGGTGGCGCTTTGACACTTTCATATGGAGACATATGGAACAG 836 consensus_9707#1 ------------------------------------------------------------ consensus_9707#0 AGAAGGCTGTCTCCTGGCAAGCATGGCTCAACAAGGCTTAGTGCGGACTCAACAACTGAA 896 consensus_9707#1 ------------------------------------------------------------ consensus_9707#0 GCCAGTCTCATCCTACACATCAATGGGTGAACTAGCGGAACAAGCCGAAAAATAATCCTA 956 consensus_9707#1 ------------------------------------------------------------ consensus_9707#0 CACCGATATAAACACCTGACTTAAACAAATTGTATTACCTTTTTGTATATCTTAATTTCT 1016 consensus_9707#1 ------------------------------------------------------------ consensus_9707#0 GTCATGGACATATATATCTATGCAACATTCCTCAGCATATAAGGAAGTCTCTTGACATTA 1076 consensus_9707#1 ------------------------------------------------------------ consensus_9707#0 TGTTTTAGTTATATCTTACTCTTTAACTATGGTTATGACATCTGAGCTGTGATTCTCTGA 1136 consensus_9707#1 ------------------------------------------------------------ consensus_9707#0 TTAGCATGTCTGCAATATTTTCTTCATATTTGTTATTCACTACTAAATTACGATGAATTG 1196 consensus_9707#1 ------------------------------------------------------------ consensus_9707#0 AAAAAAAAAAA 1207 consensus_9707#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||