These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9715#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 886 fasta sequence [TTATAACATTAGATTGAATGAAACTCCCACCGACTAATACATCATTTGTTGGATTCGATACTGTACAATTAATGGAACAAGTCATTGCATCGAAAAGTTGCCATCCACTAGAACAAACTAATAATATACATCGAGGTGTTTGTGGACAACAATCAACTTGTATTATGGTAGATGGACAATTAATAGATCGTGATTCATGTTCATATTTTGCTTCACCTTGTGTTTCTTCACCGTCCAGAGTCCATAATACAGCTAGATTGGAGTATGAAAGACCTAAAACAATTTCATTTCGTTGATTTGGATGTGTAACAACAACAAATGAAGATACCCAATCCGGTTGTGAATTTGAAGCCAAAGTGAACAGAACAGCCAGTGAAGTAGCATGTAATACAACAATATGTGCATATTGACCACAACAAAAAAGTAGACGATAGTCAAGGTAACATGTTTGATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACC-TTCCTGCAATGCACAGATTGGAGACCAAGGACTTGTG-CCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCGACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATT-CTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTTC] [+] EMBL CD164073 [TTATAACATTAGATTGAATGAAACTCCCACCGACTAATACATCATTTGTTGGATTCGATACTGTACAATTAATGGAACAAGTCATTGCATCGAAAAGTTGCCATCCACTAGAACAAACTAATAATATACATCGAGGTGTTTGTGGACAACAATCAACTTGTATTATGGTAGATGGACAATTAATAGATCGTGATTCATGTTCATATTTTGCTTCACCTTGTGTTTCTTCACCGTCCAGAGTCCATAATACAGCTAGATTGGAGTATGAAAGACCTAAAACAATTTCATTTCGTTGATTTGGATGTGTAACAACAACAAATGAAGATACCCAATCCGGTTGTGAATTTGAAGCCAAAGTGAACAGAACAGCCAGTGAAGTAGCATGTAATACAACAATATGTGCATATTGACCACAACAAAAAAGTAGACGATAGTCAAGGTAACATGTTTGATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCGTTTGCCGTCATTCC ATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACCTTTCCTGC ATGCACAGATTGNAGACCANGGACTTGTGCCCCAG TAGCATCCACCTTGGGGCACATGAGCANGAAT ] [-] EMBL CD163926 [ AGATCGTGATTCATGTTCATATTATGCTTCACCTTGTGTTTGTTCACCGTCCAGAGTCCATAATACAGCTAGATTGGAGTATGAAAGACCCAAAACAATTTCATTTCGTTGATTTGGATGTGTAACAACAACAAATGAAGATATCCAATCCGGTTGTGAATTTGAAGCCAAAGTGAACAGAACAGCCAGTGAAGTAGCATGTAATACAACAATATGTGCATATTGACCACAACAAAAAAGTAGACGATAGTCAAGGTAACATGTTTGATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACC TTCCTGCAATGCACGGATTGGAGACCAAGGACTTGTG CCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGATTTT ] [+] EMBL CD183673 [ TGATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACC TTCCTGCAATGCACAGATTGGAGACCAAGGACTTGTG CCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCGACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATT CTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTT ] [-] EMBL CD189769 [ GATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACC TTCCTGCAATGCACAGATTGGAGACCAAGGACTTGTG CCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCGACACTTTCCCCATCTTCAGACAATAAAATCGAGGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATT CTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGCCGTAGCGTTATCATTTC] [-] EMBL CD183561 [ GATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACC TTCCTGCAATGCACAGATTGGAGACCAAGGACTTGTG CCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCGACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATT CTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTT ] [-] EMBL CD189776 [ GATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACC TTCCTGCAATGCACAGATTGGAGACCAAGGACTTGTG CCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCGACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATT CTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTT ] [-] EMBL CD188551 [ GATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAGTTGATTTTTGGTTATGGGAGACC TTCCTGCAATGCACAGATTGGAGACCAAGGACTTGTG CCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCG ] [-] EMBL CD183430 [ AGGTATGGCAGTATTCCCACTTATTTTGATCATTACTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTAATCATTTC] consensusID : consensus_9715#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 865 fasta sequence [TAAGGTGTTTATTTGTAGGTCAGCGGGGCTGATGGTCCCAGAATATTTTAAAAAAAACACTGTGAAACCAACTCGCAACTCTATAATTAAAGACTCCCCTAGCGTCACAACTAAAAGTAACACCTATATGGACTATGTGTATTTGAGTAAGACTTAGTTTGTAGTCATCAGTGTGAAATGCTTAACAAACTGGAACCGTCAATGAGACGGTGTACATGAAACTTACAACCCTGGTATAATTACATTTAATACTATGATAAAGCACGATTTACGCTTGATCATACCATTGAAATACGTAGTTGCAACCAATACTTCCATGTCAATACGAGGTGTTTTAAAAGGACTGTCAAAGTAGTGAAAGCTCCCTAAACTAAAACAACCTATCTCGAAAGTTTGTATATCTGTGAGAGCAGGGTCTTGAAACATTGTGAAATTCGCCCTCAATATTATCTACTGACTTTCCGTATTCGTCGGAGCGAAATAGATCAAAGAAATCAAACACTGCAAACAGTAACTTACCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACCTTCCTGNCATGCACAGATTGGAGACCAAGGACTTGTGCCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCGACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATTCTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTT] [+] EMBL CD094933 [TAAGGTGTTTATTTGTAGGTCAGCGGGGCTGATGGTCCCAGAATATTTTAAAAAAAACACTGTGAAACCAACTCGCAACTCTATAATTAAAGACTCCCCTAGCGTCACAACTAAAAGTAACACCTATATGGACTATGTGTATTTGAGTAAGACTTAGTTTGTAGTCATCAGTGTGAAATGCTTAACAAACTGGAACCGTCAATGAGACGGTGTACATGAAACTTACAACCCTGGTATAATTACATTTAATACTATGATAAAGCACGATTTACGCTTGATCATACCATTGAAATACGTAGTTGCAACCAATACTTCCATGTCAATACGAGGTGTTTTAAAAGGACTGTCAAAGTAGTGAAAGCTCCCTAAACTAAAACAACCTATCTCGAAAGTTTGTATATCTGTGAGAGCAGGGTCTTGAAACATTGTGAAATTCGCCCTCAATATTATCTACTGACTTTCCGTATTCGTCGGAGCGAAATAGATCAAAGAAATCAAACACTGCAAACAGTAACTTACCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACCTTCCTGNCATGCACAGATTGGAGACCAAGGACTTGTGCCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAA ] [-] EMBL CD094611 [ TAAAACAACCTATCTCGAAAGTTTGTATATCTGTGAGAGCAGGGTCTTGAAACATTGTGAAGTTCGCCCTCAATATTATCTACTGACTTTCCGTATTCGTCGGAGCGAAATAAATCAAAGAAATCAAACACTGCAAACAGTAACTTACCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACCTTCCTGCAATGCACAGATTGGAGACCAAGGTCTTGTGCCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCGACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATTCTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTT] [-] EMBL CD183429 [ TCCCCATCTTCAGACAATAGAATCGAAGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTAGTCCCACTTATTTTGATCAATCTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9715#0 TTATAACATTAGATTGAATGAAACTCCCACCGACTAATACATCATTTGTTGGATTCGATA 60 consensus_9715#1 -TAAGGTGTTTATTTGTAGGTCAGCGGGGCTGATGGTCCCAGAATATTTTAAAAAAAACA 59 ** ** *** * * * * ** ** ** * ** * * * consensus_9715#0 CTGTACAATTAATGGAACAAGTCATTGCATCGAAAAGTTGCCATCCACTAGAAC--AAAC 118 consensus_9715#1 CTGTGAAACCAACTCG-CAACTCTATA-ATTAAAGACTCCCCTAGCGTCACAACTAAAAG 117 **** ** ** *** ** * ** ** * * ** * * *** *** consensus_9715#0 TAATAA-TATACAT-CGAGGTGTTTGTGGACAACAATCAACTTGTA-TTATGGTAGATGG 175 consensus_9715#1 TAACACCTATATGGACTATGTGTATTTGAGTAAGACTTAGTTTGTAGTCATCAGTGTGAA 177 *** * **** * * **** * ** ** * * * ***** * ** * consensus_9715#0 ACAATTAATAGATCGTGATTCATGTTCATATTTTGCTTCACCTTGTGTTTCTTCACCGTC 235 consensus_9715#1 ATGCTTAACAAACTGGAACC---GTCAATGAGACGGTGTACATGAAACTTACAACCCTGG 234 * **** * * * * ** ** * * ** * ** ** consensus_9715#0 CAGAGTCCATAATACAGCTAGATTGGAGTATGAAAGACCTAAAACAATTTCATTTCGTTG 295 consensus_9715#1 TATAATTACATTTAATACTATGATAAAGCACGA-----TTTACGCTTGATCATACCATTG 289 * * * ** *** * ** * ** * * * **** * *** consensus_9715#0 ATTTGGATGTGTAACAACAACAAATGAAGATAC-CCAATCCG----GTTGTGAATTTGAA 350 consensus_9715#1 A----AATACGTAGTTGCAACCAATACTTCCATGTCAATACGAGGTGTTTTAAAAGGACT 345 * ** *** **** *** * **** ** *** * ** consensus_9715#0 GCCAAAGTGAACAGAACAGCCAGTGAAGTAGCATGTAATACAACAATA-TGTGCATATTG 409 consensus_9715#1 GTCAAAGTAGTGAAAGCTCCC--TAAACTAAAACAACCTATCTCGAAAGTTTGTATATCT 403 * ****** * * * ** * ** ** * ** * * * * ** **** consensus_9715#0 ACCACAACAAAAAAGTAGACGATAGTCAAGGTAACATGTTTGATGTGATTTGATATATGT 469 consensus_9715#1 GTGAGAGCAGGGTCTTGAAACATTGTGAAATT--CGCCCTCAATATTATCTACTG-ACTT 460 * * ** * * ** ** ** * * * ** * ** * * * * consensus_9715#0 ATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAAC 529 consensus_9715#1 TCCGTATT--CGTCGGAGCGAAATAGATCAAAGAAATCAAAC---------ACTGCAAAC 509 * * *** * * * ** * ** * * * ***** consensus_9715#0 AGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACCT 589 consensus_9715#1 AGTAACTTACCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACCT 569 ** * ** ************************************************** consensus_9715#0 TCCTGCAATGCACAGATTGGAGACCAAGGACTTGTGCCCAGTTAGCATCCACCTTGGGGC 649 consensus_9715#1 TCCTGNCATGCACAGATTGGAGACCAAGGACTTGTGCCCAGTTAGCATCCACCTTGGGGC 629 ***** ***************************************************** consensus_9715#0 ACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGC 709 consensus_9715#1 ACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGC 689 ************************************************************ consensus_9715#0 GACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATG 769 consensus_9715#1 GACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATG 749 ************************************************************ consensus_9715#0 TGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATTCTTTCCCATAA 829 consensus_9715#1 TGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATTCTTTCCCATAA 809 ************************************************************ consensus_9715#0 GAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTTC 886 consensus_9715#1 GAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTT- 865 ******************************************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||