These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1000 fasta sequence [TCCCGGGACGGGCTGGCATCAATTTCTCATCTACGTTGCAGTAAAGTGATGAACAGCAGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGAAAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTTTTACACTCTTATTTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAGTGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACCTTGCATGCTTTTATGCTTTGTCCACAGTTTGGGCTGTTTACAGTATTATTAACGAAGGTTTTATAGAGAATTTAAACAGTTTGTGGGATAATTATCCGCAGAGATGGCTGCCATTTTGGATCAAATTATTTTTCATCACTCAAATTTGCTACTGGCTTCATGACTATCCAGAGCTTTATTTTCAGCGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTCTTCACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGTTGCACCTTGCGGAGTACAAGTTTGCATCCATTGGTTTTACCATATGGAATTTGGCTTTTATACCAGTTCGAATGGCATGCGTAATCCTTGGTTTTCTCACTTTTCATCATGGTTTAGGAAAGTATTCTGTAACGTTGGTGCAAATTACCGATGGAAATTTCAATACTCCATCCATAAGAATTGCTGCAATGCTACTTTTCTTCACTACACAAGCTTTAATGGTATGGAATTTCATAACTTTCCATC] [+] EMBL CD061086 [TCCCGGGACGGGCTGGCATCAATTTCTCATCTACGTTGCAGTAAAGTGATGAACAGCAGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGAAAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTTTTACACTCTTATTTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAGTGACTCG ] [-] EMBL CD098090 [ CATCAATTTCTCATCTACGTTGCAGTAAAGTGATGAACAGCAGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCGTGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAGCCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGAAAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTTTTACACTCTTATTTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAGTGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACCTTGCATGCTTTTATG ] [+] EMBL CD097958 [ aCATCAATTTCTCATCTACGTTGCAGTAAAGTGATGAACAGCAGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGAAAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTTTTACACTCTTATTTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAGTGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACCTTGCATGCTTTTAT ] [+] EMBL AI975415 [ GATGAACAGCAGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGAAAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTTTTACACTCTTATTTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAGTGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACCTTGCATGCTTTTATGCTTTGTCCACAGTTTGGGCTGTTTACAGTATTATTAACGAAGGTTTTATAGAGAATTTAAACAGTTTGTGGGATAATTATCCGCAGAGATGGCTGCCAATTTG ] [+] EMBL AI067870 [ AATCCCCCCTATTTTTCTCATGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGAAAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTTTTACACTCTTATTTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAGTGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACCTTGCATGCTTTTATGCTTTGTCCACAGTTTGGGCTGTTTACAGTATTATTAACGAAGGTTTTATAGAGAATTTAAACAGTTTGTGGGATAATTATCCGCAGAGATGGCTGCCATTTTGGATCAAATTATTTTTCATCACTCAAATTTGCTACTGGCTTCATGACTATCCAGAGCTTTATTTTCAGCGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTCTTCACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGTTGCACCTTGCGGAGT ] [-] EMBL CD183930 [ TTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTTTTACACTCTTATNTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAGTGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACCTTGCATGCTTTTATGCTTTGTCCACAGTTTGGGCTGTTTACAGTATTATTAACGAAGGTTTTATAGAGAATTTAAACAGTTTGTGGGATAATTATCCGCAGAGATGGCTGCCATTTTGGATCAAATTATTTTTCATCACTCAAATTTGCTACTGGCTTCATGACTATCCAGAGCTTTATTTTCAGCGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTCTTCACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGTTGCACCTTGCGGAGTACAAGTTTGCATCCATTGGTTTTACCA ] [+] EMBL BF936340 [ ATCTCTTTGACAAAGTGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACCTTGCATGCTTTTATGCTTTGTCCACAGTTTGGGCTGTTTACAGTATTATTAACGAAGGTTTTATAGAGAATTTAAACAGTCTGAGGGATAATTATCCGCAGAGATGGCTGCCATTTTGGATCAAATTATTTCTCATCACTCAAATTTGCTACTGGCTTCATGACTATTCAAAGCTTTATTTTCAACGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACT ] [+] EMBL CD164919 [ ATGGCTGCCATTTTGGATCAAATTATTTTTCATCACTCAAATTTGCTACTGGCTTCATGACTATCCAGAGCTTTATTTTCAGCGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTCTTCACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGCTG ] [-] EMBL CD089893 [ TGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTCTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTCTTCACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGTTGCACCTTGCGGAGTACAAGTTTGCATCCATTGGTTTTACCATATGGAATTTGGCTTTTATACCAGTTCGAATGGCATGCGTAATCCTTGGTTTTCTCACTTTTCATCATGGTTTAGGAAAGTATTCTGTAACGTTGGTGCAAATTACCGATGGAAATTTCAATACTCCATCCATAAGAATTGCTGCAATGCTACTTTTCTTCACTACACAAGCTTTAATGGTATGGAATTTCATAACTTTCCATC] consensusID : consensus_9719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [ATAATTATCCGCAGAGATGGCTGCCATTTTGGATCAAATTATTTTTCATCACTCAAGTAAGATATTTTATCAACTATTACTTCCAGATTTGCTACTGGCTTCATGACTATCCAGAGCTTTATTTTCAGCGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTCTTTACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGTTGCACCTTGCGGAGTACAAGTTTGCATCCATTGGTTTTACCATATGGAATTTGGCTTTTATACCAGTACGAATGGCATGC] [+] EMBL CD133089 [ATAATTATCCGCAGAGATGGCTGCCATTTTGGATCAAATTATTTTTCATCACTCAAGTAAGATATTTTATCAACTATTACTTCCAGATTTGCTACTGGCTTCATGACTATCCAGAGCTTTATTTTCAGCGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTCTTTACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGTTGCACCTTGCGGAGTACAAGTTTGCATCCATTGGTTTTACCATATGGAATTTGGCTTTTATACCAGTACGAATGGCATGC] consensusID : consensus_9719#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence [GCGGCCACGATTCGGTCCGAGGTGATGAACAGCAGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGATAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTCTTACACTCTTATNTGTATCGTTTCCCATGCTGT] [+] EMBL CD077711 [GCGGCCACGATTCGGTCCGAGGTGATGAACAGCAGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGATAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTCTTACACTCTTATNTGTATCGTTTCCCATGCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9719#0 TCCCGGGACGGGCTGGCATCAATTTCTCATCTACGTTGC-AGT--AAAGTGATGAACAGC 57 consensus_9719#2 --------------------------GCGGCCACGATTC-GGTCCGAGGTGATGAACAGC 33 consensus_9719#1 ----------ATAATTATCCGCAGAGATGGCTGCCATTTTGGATCAAATTATTTTTCATC 50 * * * * * * * ** * consensus_9719#0 AGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACA 117 consensus_9719#2 AGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACA 93 consensus_9719#1 ACTCAAGTAAGATATTTTATCAACTATTACTTCCAGATTTGCTACTGGCT--TCATGACT 108 * * * * * ** ** * * * *** * * * ** ** consensus_9719#0 AATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAG 177 consensus_9719#2 AATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAG 153 consensus_9719#1 ATCCAGAGCTTTATTTTCAGCGTGTTAAGAATGA-ACTCATACCTGCACGACTGTTCCAT 167 * ** * *** **** ** *** **** * **** ** *** * * consensus_9719#0 GGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAAC 237 consensus_9719#2 GGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAAC 213 consensus_9719#1 GCAAC----ATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATT 223 * *** ** * ***** * ** ** * * * * ** *** consensus_9719#0 CAAGAAAATG--CCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTT---T 292 consensus_9719#2 CAAGATAATG--CCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTT---T 268 consensus_9719#1 ATGTATGGTCGTTCTTGTTCTTTACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGC 283 * * *** ** * * * * * * ** *** * * consensus_9719#0 TTTACACTCTTATTTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAG 352 consensus_9719#2 CTTACACTCTTATNTGTATCGTTTCCCATGCTGT-------------------------- 302 consensus_9719#1 GTTGCACCTTGCGGAGTACAAGTTTGCATCCATTGGTTTTACCATATGGAATTTGGCTTT 343 ** *** * *** ** *** * * consensus_9719#0 TGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACC 412 consensus_9719#2 ------------------------------------------------------------ consensus_9719#1 TATACCAGTACGAATGGCATGC-------------------------------------- 365 consensus_9719#0 TTGCATGCTTTTATGCTTTGTCCACAGTTTGGGCTGTTTACAGTATTATTAACGAAGGTT 472 consensus_9719#2 ------------------------------------------------------------ consensus_9719#1 ------------------------------------------------------------ consensus_9719#0 TTATAGAGAATTTAAACAGTTTGTGGGATAATTATCCGCAGAGATGGCTGCCATTTTGGA 532 consensus_9719#2 ------------------------------------------------------------ consensus_9719#1 ------------------------------------------------------------ consensus_9719#0 TCAAATTATTTTTCATCACTCAAATTTGCTACTGGCTTCATGACTATCCAGAGCTTTATT 592 consensus_9719#2 ------------------------------------------------------------ consensus_9719#1 ------------------------------------------------------------ consensus_9719#0 TTCAGCGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTC 652 consensus_9719#2 ------------------------------------------------------------ consensus_9719#1 ------------------------------------------------------------ consensus_9719#0 TTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTC 712 consensus_9719#2 ------------------------------------------------------------ consensus_9719#1 ------------------------------------------------------------ consensus_9719#0 TTCACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGTTGCACCTTGCGGAGTACA 772 consensus_9719#2 ------------------------------------------------------------ consensus_9719#1 ------------------------------------------------------------ consensus_9719#0 AGTTTGCATCCATTGGTTTTACCATATGGAATTTGGCTTTTATACCAGTTCGAATGGCAT 832 consensus_9719#2 ------------------------------------------------------------ consensus_9719#1 ------------------------------------------------------------ consensus_9719#0 GCGTAATCCTTGGTTTTCTCACTTTTCATCATGGTTTAGGAAAGTATTCTGTAACGTTGG 892 consensus_9719#2 ------------------------------------------------------------ consensus_9719#1 ------------------------------------------------------------ consensus_9719#0 TGCAAATTACCGATGGAAATTTCAATACTCCATCCATAAGAATTGCTGCAATGCTACTTT 952 consensus_9719#2 ------------------------------------------------------------ consensus_9719#1 ------------------------------------------------------------ consensus_9719#0 TCTTCACTACACAAGCTTTAATGGTATGGAATTTCATAACTTTCCATC 1000 consensus_9719#2 ------------------------------------------------ consensus_9719#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||