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Schistosoma mansoni
cluster # 9725 cluster # 9725       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9725#0 length = 919 sequences # 7  
consensus_9725#1 length = 607 sequences # 2  
consensus_9725#2 length = 297 sequences # 2  

consensusID : consensus_9725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 919
fasta sequence
                              [TAACGACTAGGTAGAGTGGAGCTAGACTCACCACTGACGAGGCACAGTCATGGAAGTCCCATTAACTTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTGGTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA-TGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACTCA-TTTCTTCAAAACTAATCCCATTTGCTTCCAGAATCATATCCCCAGGTTCAATTCGTCCATCTTGAGCGACAGCACCACCTTTCATGATAGAACCTACATAAATCCCACCATCTCCAGATTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGAAGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTAGATTCTTCTTCCGAGTCTAAGAAGCTAGTTGA-TTCTAAATCAGAACTCATCATTGAA-GGAGCCTCGTAGGTATTCGAACTAGGTAAATGACGATAGTGGCGATGCCGTGAACCACTATGGGTTGTCTGTTGAGTAATATGACTACCACCACTCGTTGTATGGTGATGTCGACCACTAGATTTATAATTGTGAAAATTCCGTAGAGGAGCAATGCGATCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTTTGTCCAATATTTCCTCCATGTCCAAGGTTTGCA]

[+] EMBL CD068233             [TAACGACTAGGTAGAGTGGAGCTAGACTCACCACTGACGAGGCACAGTCATGGAAGTCCCATTAACTTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTGGTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA TGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACTCA TTTCTTCAAAACTAATCCCATTTGCTTCCAGAATCATATCCCCAGGTTCAATTCGTCCATCTTGAGCGACAGCACCACCTTTCATGATAGAACCTACATAAATCCCACCATCTCCAGATTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGACATAC                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD177681             [                                                                                                                                                             ACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGTTCCCAACATTTAGCAACAACTAATTGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACTCATTTTCTTCAAAACTAATCCCATTTGCTTCCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD190410             [                                                                                                                                                                                TTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA TGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACTCA TTTCTTCAAAACTAATCCCATTTGCTTCCAGAATCATATCCCCAGGTTCAATTCGTCCATCTTGAGCGACAGCACCACCTTTCATGATAGAACCTACATAAATCCCACCATCTCCAGATTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGAAGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTAGATTCTTCTTCCGAGTCTAAGAAGCTAGTTGA TTCTAAATCAGAA                                                                                                                                                                                                                                                          ]
[-] EMBL CD192233             [                                                                                                                                                                                                                                                                                                                                                                                       ATGATAGAACCTACATAAATCCCACCATCTCCAGATTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGTAACTGCAACAATATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD192388             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGGAGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD192322             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGAAGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTAGATTCTTCTTCCGAGTCTAAGAAGCTAGTTGA TTCTAAATCAGAACTCATCATTGAA GGAGCCTCGTAGGTATTCGAACTAGGTAAATGACGATAGTGGCGATGCCGTGAACCACTATGGGTTGTCTGTTGAGTAATATGACTACCACCACTC                                                                                                                                             ]
[-] EMBL CD181427             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTAAGAAGCTAG TGATTTCTAAATCAGAACTCATCA TGAAGGGAGCCTCGTAGGTATTCGAACTAGGTAAATGGCGATAGTGGCGATGCCGTGAACCACTATGGGTTGTCTGTTGAGTAATATGACTACCACCACTCGTTGTATGGTGATGTCGACCACTAGATTTATAATTGTGAAAATTCCGTAGAGGAGCAATGCGATCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTTTGTCCAATATTTCCTCCATGTCCAAGGTTTGCA]


>consensus_9725#0 TAACGACTAGGTAGAGTGGAGCTAGACTCACCACTGACGAGGCACAGTCATGGAAGTCCC ATTAACTTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTGGTCATTGCATT GGTATGTAACACCCAGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGT AAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAATGTAATAGGTCC AGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACTCATTTCTTCAAA ACTAATCCCATTTGCTTCCAGAATCATATCCCCAGGTTCAATTCGTCCATCTTGAGCGAC AGCACCACCTTTCATGATAGAACCTACATAAATCCCACCATCTCCAGATTTATTTGACTG ACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGTAACTGCAACAAT ATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGG TGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGAAGATAATGTTGT TCCAGTGACTGATGAAAATCTGCTAGATTCTTCTTCCGAGTCTAAGAAGCTAGTTGATTC TAAATCAGAACTCATCATTGAAGGAGCCTCGTAGGTATTCGAACTAGGTAAATGACGATA GTGGCGATGCCGTGAACCACTATGGGTTGTCTGTTGAGTAATATGACTACCACCACTCGT TGTATGGTGATGTCGACCACTAGATTTATAATTGTGAAAATTCCGTAGAGGAGCAATGCG ATCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTTTGTCCAATATTTCC TCCATGTCCAAGGTTTGCA



consensusID : consensus_9725#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 607
fasta sequence
                              [AAAATGACGTAACAAGTAGATATTGACTGACAATAAAAACTGACCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTTTGTCCAATATTCCCTCCATGTCCAAGGTTTGCAGAAGTAGAATCAGCTGGAGCAGCGGTCGTATGTGACTGAAGTGTACAAGAGTTGACTTTGCATTCGTTGTTGCTTCGCGTATTAGACTCCAAATCAAGGTTAGGATCATATTTACTACTATTTACACTAGTGTTTGGTTCAACGGAGGGGCTGAGAACACCTGGATCAGACGCTATACTTTCATCTGTAGTCACCAACCAAGAAACAACACGGCCATTAAAACAAGGGAGTGGAGCGTTATCTTCGAATATTTCCTCCTTAACAACCC-CGAAGTCTACAAGAAAATTAGGGATTAAAAGAAATCAAAGAAAGCAGCAAGGAAGCGTGACTGACTGCATTAGAAAAAACATAGCTTGGACGTGAACCTACTCGTTACGTTTCACATAAGCAGTGAGAGAAAATCAATAGAGAGATGTTAGTGACGAAAATCAAAAAAGGGATATGGTACGAAATGAACGAGTGAAACANNAGAACAAAATATTTCTA]

[-] EMBL CD120062             [AAAATGACGTAACAAGTAGATATTGACTGACAATAAAAACTGACCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTTTGTCCAATATTCCCTCCATGTCCAAGGTTTGCAGAAGTAGAATCAGCTGGAGCAGCGGTCGTATGTGACTGAAGTGTACAAGAGTTGACTTTGCATTCGTTGTTGCTTCGCGTATTAGACTCCAAATCAAGGTTAGGATCATATTTACTACTATTTACACTAGTGTTTGGTTCAACGGAGGGGCTGAGAACACCTGGATCAGACGCTATACTTTCATCTGTAGTCACCAACCAAGAAACAACACGGCCATTAAAACAAGGGAGTGGAGCGTTATCTTCGAATATTTCCTCCTTAACAACCC CGAAGTC                                                                                                                                                                                                                   ]
[+] EMBL CD126940             [                                                                                                                                                                     ACAAGAGTTGACTTTGCATTCGTTGTTGCTTCGCGTATTAGACTCCAAATCAAGGTTAGGATCATATTTACTACTATTTACACTAGTGTTTGGTTCAACGGAGGGGCTGAGAACACCTGGATCAGACGCTATACTTTCATCTGTAGCCACCAACCAAGAAACAACACGGCCATTAAAACAAGGGAGTGGAGCGTTATCTTCGAATATTTCCTCCTTAACAACCCTAGGAAT TACAAGAAAATTAGGGATTAAAAGAAATCAAAGAAAGCAGCAAGGAAGCGTGACTGACTGCATTAGAAAAAACATAGCTTGGACGTGAACCTACTCGTTACGTTTCACATAAGCAGTGAGAGAAAATCAATAGAGAGATGTTAGTGACGAAAATCAAAAAAGGGATATGGTACGAAATGAACGAGTGAAACANNAGAACAAAATATTTCTA]


>consensus_9725#1 AAAATGACGTAACAAGTAGATATTGACTGACAATAAAAACTGACCTTGGTTAGCACTATG TACAGATTCCGTTTCTGTATCGTAATTTTGTCCAATATTCCCTCCATGTCCAAGGTTTGC AGAAGTAGAATCAGCTGGAGCAGCGGTCGTATGTGACTGAAGTGTACAAGAGTTGACTTT GCATTCGTTGTTGCTTCGCGTATTAGACTCCAAATCAAGGTTAGGATCATATTTACTACT ATTTACACTAGTGTTTGGTTCAACGGAGGGGCTGAGAACACCTGGATCAGACGCTATACT TTCATCTGTAGTCACCAACCAAGAAACAACACGGCCATTAAAACAAGGGAGTGGAGCGTT ATCTTCGAATATTTCCTCCTTAACAACCCCGAAGTCTACAAGAAAATTAGGGATTAAAAG AAATCAAAGAAAGCAGCAAGGAAGCGTGACTGACTGCATTAGAAAAAACATAGCTTGGAC GTGAACCTACTCGTTACGTTTCACATAAGCAGTGAGAGAAAATCAATAGAGAGATGTTAG TGACGAAAATCAAAAAAGGGATATGGTACGAAATGAACGAGTGAAACANNAGAACAAAAT ATTTCTA



consensusID : consensus_9725#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 297
fasta sequence
                              [GAGAATCCAGTGTGGCATTGAAGTTTGCCCTGATGTCAAGGTGCCCATGCTCATACCAGGAGTAAGACCAGGAGGGCTAAGAGTGGAGCTAGACTCACCACCTGACGAGGCACCAGTCATGGAAGTCCCATTAACTTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTGGTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA]

[+] EMBL CD188746             [GAGAATCCAGTGTGGCATTGAAGTTTGCCCTGATGTCAAGGTGCCCATGCTCATACCAGGAGTAAGACCAGGAGGGCTAAGAGTGGAGCTAGACTCACCACCTGACGAGGCACCAGTCATGGAAGTCCCATTAACTTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTGGTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA]
[-] EMBL CD181914             [                                                                                                                                                                                                           AGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGT AAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTA ]


>consensus_9725#2 GAGAATCCAGTGTGGCATTGAAGTTTGCCCTGATGTCAAGGTGCCCATGCTCATACCAGG AGTAAGACCAGGAGGGCTAAGAGTGGAGCTAGACTCACCACCTGACGAGGCACCAGTCAT GGAAGTCCCATTAACTTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTGGT CATTGCATTGGTATGTAACACCCAGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCG AGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9725#0      ------------------------------------------------------------
consensus_9725#2      GAGAATCCAGTGTGGCATTGAAGTTTGCCCTGATGTCAAGGTGCCCATGCTCATACCAGG 60
consensus_9725#1      ------------------------------------------------------------
                                                                                  

consensus_9725#0      -------TAACGACTAGGTAGAGTGGAGCTAGACTCACCAC-TGACGAGGCAC--AGTCA 50
consensus_9725#2      AGTAAGACCAGGAGGGCTAAGAGTGGAGCTAGACTCACCACCTGACGAGGCACC-AGTCA 119
consensus_9725#1      --------------------------------------AAAATGACGTAACAAGTAGATA 22
                                                             *  *****   **   **  *

consensus_9725#0      TGGAAGTCCCATTAAC-TTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTG 109
consensus_9725#2      TGGAAGTCCCATTAAC-TTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTG 178
consensus_9725#1      TTGACTGACAATAAAAACTGACCTTGGTTAGCACTATGTACAGATTCCGTTTCTG-TATC 81
                      * **    * ** **   ** *  **  ** *****  *  *   *  *  **** * * 

consensus_9725#0      GTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCA-ATAGGATGCACAGGTTCTTG 168
consensus_9725#2      GTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCA-ATAGGATGCACAGGTTCTTG 237
consensus_9725#1      GTAATTTTGTCCA-ATATTCCCTCCATGTCCAAGGTTTGCAGAAGTAGAATCAGCTGGAG 140
                      ** ***   *    ** *  *  *** *  *  ** *   * * *  * *   * *   *

consensus_9725#0      GCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA 228
consensus_9725#2      GCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA 297
consensus_9725#1      CAGCGGTCGTATGTGACTGAAGTGTACAAGAGTTGACTTT--GCATTCGTTGTTGCTTCG 198
                        * ***  * *   *      *      ** * *  *     ****          *  

consensus_9725#0      TGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACT 288
consensus_9725#2      ------------------------------------------------------------
consensus_9725#1      CGTATTAGACTCCAAATCAAGGTTAGGATCATATTTACTACTATTTACACTAGTGTTTGG 258
                                                                                  

consensus_9725#0      CATTTCTTCAAAACTAATCCCATTTGCTTCCAGAATCATATCCCCAGGTTCAATTCGTCC 348
consensus_9725#2      ------------------------------------------------------------
consensus_9725#1      TTCAACGGAGGGGCTGAGAACACCTGGATCAGACGCTATACTTTCATCTGTAGT-CACCA 317
                                                                                  

consensus_9725#0      ATCTTGAGCGACAGCACCACCTTTCATGATAGAACCTACATAAATCCCACCATCTCCAGA 408
consensus_9725#2      ------------------------------------------------------------
consensus_9725#1      ACC--AAGAAACAACACGGCCATTAAAACAAGGGAGTGGA------GCGTTATCTTCGAA 369
                                                                                  

consensus_9725#0      TTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGT 468
consensus_9725#2      ------------------------------------------------------------
consensus_9725#1      TATTTCCTCCTTAACAACCCCGAAGTCTACAAGAAAATTAGGGA--------TTAAAAGA 421
                                                                                  

consensus_9725#0      AACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCG 528
consensus_9725#2      ------------------------------------------------------------
consensus_9725#1      AATCAAAGAAAGCAGCAAGGAAGCGTGACTGACTGCATTA---------GAAAAAACATA 472
                                                                                  

consensus_9725#0      GCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGA 588
consensus_9725#2      ------------------------------------------------------------
consensus_9725#1      GCTTGGACGTGA-ACCTACTCGTTACGTTTCACATAAGCAGTGAGAGAAAATCAATAGAG 531
                                                                                  

consensus_9725#0      AGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTA--GATTCTTCTTCCGAGTCTAAG 646
consensus_9725#2      ------------------------------------------------------------
consensus_9725#1      AGATGTTAGTGACGAAAATCAAAAAAGGGATATGGTACGAAATGAACGAGTGAAACANNA 591
                                                                                  

consensus_9725#0      AAGCTAGTTGATTCTAAATCAGAACTCATCATTGAAGGAGCCTCGTAGGTATTCGAACTA 706
consensus_9725#2      ------------------------------------------------------------
consensus_9725#1      GAACAAAATATTTCTA-------------------------------------------- 607
                                                                                  

consensus_9725#0      GGTAAATGACGATAGTGGCGATGCCGTGAACCACTATGGGTTGTCTGTTGAGTAATATGA 766
consensus_9725#2      ------------------------------------------------------------
consensus_9725#1      ------------------------------------------------------------
                                                                                  

consensus_9725#0      CTACCACCACTCGTTGTATGGTGATGTCGACCACTAGATTTATAATTGTGAAAATTCCGT 826
consensus_9725#2      ------------------------------------------------------------
consensus_9725#1      ------------------------------------------------------------
                                                                                  

consensus_9725#0      AGAGGAGCAATGCGATCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTT 886
consensus_9725#2      ------------------------------------------------------------
consensus_9725#1      ------------------------------------------------------------
                                                                                  

consensus_9725#0      TGTCCAATATTTCCTCCATGTCCAAGGTTTGCA 919
consensus_9725#2      ---------------------------------
consensus_9725#1      ---------------------------------
                                                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)