These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9725#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 919 fasta sequence [TAACGACTAGGTAGAGTGGAGCTAGACTCACCACTGACGAGGCACAGTCATGGAAGTCCCATTAACTTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTGGTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA-TGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACTCA-TTTCTTCAAAACTAATCCCATTTGCTTCCAGAATCATATCCCCAGGTTCAATTCGTCCATCTTGAGCGACAGCACCACCTTTCATGATAGAACCTACATAAATCCCACCATCTCCAGATTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGAAGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTAGATTCTTCTTCCGAGTCTAAGAAGCTAGTTGA-TTCTAAATCAGAACTCATCATTGAA-GGAGCCTCGTAGGTATTCGAACTAGGTAAATGACGATAGTGGCGATGCCGTGAACCACTATGGGTTGTCTGTTGAGTAATATGACTACCACCACTCGTTGTATGGTGATGTCGACCACTAGATTTATAATTGTGAAAATTCCGTAGAGGAGCAATGCGATCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTTTGTCCAATATTTCCTCCATGTCCAAGGTTTGCA] [+] EMBL CD068233 [TAACGACTAGGTAGAGTGGAGCTAGACTCACCACTGACGAGGCACAGTCATGGAAGTCCCATTAACTTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTGGTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA TGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACTCA TTTCTTCAAAACTAATCCCATTTGCTTCCAGAATCATATCCCCAGGTTCAATTCGTCCATCTTGAGCGACAGCACCACCTTTCATGATAGAACCTACATAAATCCCACCATCTCCAGATTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGACATAC ] [-] EMBL CD177681 [ ACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGTTCCCAACATTTAGCAACAACTAATTGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACTCATTTTCTTCAAAACTAATCCCATTTGCTTCCAG ] [+] EMBL CD190410 [ TTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA TGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACTCA TTTCTTCAAAACTAATCCCATTTGCTTCCAGAATCATATCCCCAGGTTCAATTCGTCCATCTTGAGCGACAGCACCACCTTTCATGATAGAACCTACATAAATCCCACCATCTCCAGATTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGAAGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTAGATTCTTCTTCCGAGTCTAAGAAGCTAGTTGA TTCTAAATCAGAA ] [-] EMBL CD192233 [ ATGATAGAACCTACATAAATCCCACCATCTCCAGATTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGTAACTGCAACAATATTT ] [+] EMBL CD192388 [ CGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGGAGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTA ] [+] EMBL CD192322 [ CGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGAAGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTAGATTCTTCTTCCGAGTCTAAGAAGCTAGTTGA TTCTAAATCAGAACTCATCATTGAA GGAGCCTCGTAGGTATTCGAACTAGGTAAATGACGATAGTGGCGATGCCGTGAACCACTATGGGTTGTCTGTTGAGTAATATGACTACCACCACTC ] [-] EMBL CD181427 [ CTAAGAAGCTAG TGATTTCTAAATCAGAACTCATCA TGAAGGGAGCCTCGTAGGTATTCGAACTAGGTAAATGGCGATAGTGGCGATGCCGTGAACCACTATGGGTTGTCTGTTGAGTAATATGACTACCACCACTCGTTGTATGGTGATGTCGACCACTAGATTTATAATTGTGAAAATTCCGTAGAGGAGCAATGCGATCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTTTGTCCAATATTTCCTCCATGTCCAAGGTTTGCA] consensusID : consensus_9725#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence [AAAATGACGTAACAAGTAGATATTGACTGACAATAAAAACTGACCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTTTGTCCAATATTCCCTCCATGTCCAAGGTTTGCAGAAGTAGAATCAGCTGGAGCAGCGGTCGTATGTGACTGAAGTGTACAAGAGTTGACTTTGCATTCGTTGTTGCTTCGCGTATTAGACTCCAAATCAAGGTTAGGATCATATTTACTACTATTTACACTAGTGTTTGGTTCAACGGAGGGGCTGAGAACACCTGGATCAGACGCTATACTTTCATCTGTAGTCACCAACCAAGAAACAACACGGCCATTAAAACAAGGGAGTGGAGCGTTATCTTCGAATATTTCCTCCTTAACAACCC-CGAAGTCTACAAGAAAATTAGGGATTAAAAGAAATCAAAGAAAGCAGCAAGGAAGCGTGACTGACTGCATTAGAAAAAACATAGCTTGGACGTGAACCTACTCGTTACGTTTCACATAAGCAGTGAGAGAAAATCAATAGAGAGATGTTAGTGACGAAAATCAAAAAAGGGATATGGTACGAAATGAACGAGTGAAACANNAGAACAAAATATTTCTA] [-] EMBL CD120062 [AAAATGACGTAACAAGTAGATATTGACTGACAATAAAAACTGACCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTTTGTCCAATATTCCCTCCATGTCCAAGGTTTGCAGAAGTAGAATCAGCTGGAGCAGCGGTCGTATGTGACTGAAGTGTACAAGAGTTGACTTTGCATTCGTTGTTGCTTCGCGTATTAGACTCCAAATCAAGGTTAGGATCATATTTACTACTATTTACACTAGTGTTTGGTTCAACGGAGGGGCTGAGAACACCTGGATCAGACGCTATACTTTCATCTGTAGTCACCAACCAAGAAACAACACGGCCATTAAAACAAGGGAGTGGAGCGTTATCTTCGAATATTTCCTCCTTAACAACCC CGAAGTC ] [+] EMBL CD126940 [ ACAAGAGTTGACTTTGCATTCGTTGTTGCTTCGCGTATTAGACTCCAAATCAAGGTTAGGATCATATTTACTACTATTTACACTAGTGTTTGGTTCAACGGAGGGGCTGAGAACACCTGGATCAGACGCTATACTTTCATCTGTAGCCACCAACCAAGAAACAACACGGCCATTAAAACAAGGGAGTGGAGCGTTATCTTCGAATATTTCCTCCTTAACAACCCTAGGAAT TACAAGAAAATTAGGGATTAAAAGAAATCAAAGAAAGCAGCAAGGAAGCGTGACTGACTGCATTAGAAAAAACATAGCTTGGACGTGAACCTACTCGTTACGTTTCACATAAGCAGTGAGAGAAAATCAATAGAGAGATGTTAGTGACGAAAATCAAAAAAGGGATATGGTACGAAATGAACGAGTGAAACANNAGAACAAAATATTTCTA] consensusID : consensus_9725#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 297 fasta sequence [GAGAATCCAGTGTGGCATTGAAGTTTGCCCTGATGTCAAGGTGCCCATGCTCATACCAGGAGTAAGACCAGGAGGGCTAAGAGTGGAGCTAGACTCACCACCTGACGAGGCACCAGTCATGGAAGTCCCATTAACTTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTGGTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA] [+] EMBL CD188746 [GAGAATCCAGTGTGGCATTGAAGTTTGCCCTGATGTCAAGGTGCCCATGCTCATACCAGGAGTAAGACCAGGAGGGCTAAGAGTGGAGCTAGACTCACCACCTGACGAGGCACCAGTCATGGAAGTCCCATTAACTTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTGGTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA] [-] EMBL CD181914 [ AGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGT AAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9725#0 ------------------------------------------------------------ consensus_9725#2 GAGAATCCAGTGTGGCATTGAAGTTTGCCCTGATGTCAAGGTGCCCATGCTCATACCAGG 60 consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 -------TAACGACTAGGTAGAGTGGAGCTAGACTCACCAC-TGACGAGGCAC--AGTCA 50 consensus_9725#2 AGTAAGACCAGGAGGGCTAAGAGTGGAGCTAGACTCACCACCTGACGAGGCACC-AGTCA 119 consensus_9725#1 --------------------------------------AAAATGACGTAACAAGTAGATA 22 * ***** ** ** * consensus_9725#0 TGGAAGTCCCATTAAC-TTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTG 109 consensus_9725#2 TGGAAGTCCCATTAAC-TTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTG 178 consensus_9725#1 TTGACTGACAATAAAAACTGACCTTGGTTAGCACTATGTACAGATTCCGTTTCTG-TATC 81 * ** * ** ** ** * ** ** ***** * * * * **** * * consensus_9725#0 GTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCA-ATAGGATGCACAGGTTCTTG 168 consensus_9725#2 GTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCA-ATAGGATGCACAGGTTCTTG 237 consensus_9725#1 GTAATTTTGTCCA-ATATTCCCTCCATGTCCAAGGTTTGCAGAAGTAGAATCAGCTGGAG 140 ** *** * ** * * *** * * ** * * * * * * * * * consensus_9725#0 GCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA 228 consensus_9725#2 GCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA 297 consensus_9725#1 CAGCGGTCGTATGTGACTGAAGTGTACAAGAGTTGACTTT--GCATTCGTTGTTGCTTCG 198 * *** * * * * ** * * * **** * consensus_9725#0 TGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACT 288 consensus_9725#2 ------------------------------------------------------------ consensus_9725#1 CGTATTAGACTCCAAATCAAGGTTAGGATCATATTTACTACTATTTACACTAGTGTTTGG 258 consensus_9725#0 CATTTCTTCAAAACTAATCCCATTTGCTTCCAGAATCATATCCCCAGGTTCAATTCGTCC 348 consensus_9725#2 ------------------------------------------------------------ consensus_9725#1 TTCAACGGAGGGGCTGAGAACACCTGGATCAGACGCTATACTTTCATCTGTAGT-CACCA 317 consensus_9725#0 ATCTTGAGCGACAGCACCACCTTTCATGATAGAACCTACATAAATCCCACCATCTCCAGA 408 consensus_9725#2 ------------------------------------------------------------ consensus_9725#1 ACC--AAGAAACAACACGGCCATTAAAACAAGGGAGTGGA------GCGTTATCTTCGAA 369 consensus_9725#0 TTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGT 468 consensus_9725#2 ------------------------------------------------------------ consensus_9725#1 TATTTCCTCCTTAACAACCCCGAAGTCTACAAGAAAATTAGGGA--------TTAAAAGA 421 consensus_9725#0 AACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCG 528 consensus_9725#2 ------------------------------------------------------------ consensus_9725#1 AATCAAAGAAAGCAGCAAGGAAGCGTGACTGACTGCATTA---------GAAAAAACATA 472 consensus_9725#0 GCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGA 588 consensus_9725#2 ------------------------------------------------------------ consensus_9725#1 GCTTGGACGTGA-ACCTACTCGTTACGTTTCACATAAGCAGTGAGAGAAAATCAATAGAG 531 consensus_9725#0 AGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTA--GATTCTTCTTCCGAGTCTAAG 646 consensus_9725#2 ------------------------------------------------------------ consensus_9725#1 AGATGTTAGTGACGAAAATCAAAAAAGGGATATGGTACGAAATGAACGAGTGAAACANNA 591 consensus_9725#0 AAGCTAGTTGATTCTAAATCAGAACTCATCATTGAAGGAGCCTCGTAGGTATTCGAACTA 706 consensus_9725#2 ------------------------------------------------------------ consensus_9725#1 GAACAAAATATTTCTA-------------------------------------------- 607 consensus_9725#0 GGTAAATGACGATAGTGGCGATGCCGTGAACCACTATGGGTTGTCTGTTGAGTAATATGA 766 consensus_9725#2 ------------------------------------------------------------ consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 CTACCACCACTCGTTGTATGGTGATGTCGACCACTAGATTTATAATTGTGAAAATTCCGT 826 consensus_9725#2 ------------------------------------------------------------ consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 AGAGGAGCAATGCGATCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTT 886 consensus_9725#2 ------------------------------------------------------------ consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 TGTCCAATATTTCCTCCATGTCCAAGGTTTGCA 919 consensus_9725#2 --------------------------------- consensus_9725#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||