These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9744#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [NCGGCCTCCGGTACCCCGCTCTAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTAGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACACCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGCTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGC] [+] EMBL CD066044 [NCGGCCTCCGGTACCCCGCTCTAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTAGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACACCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGCTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGC] consensusID : consensus_9744#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 484 fasta sequence [CGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCCCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCGCTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACGAACACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCG] [+] EMBL CD071926 [CGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCCCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCGCTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACGAACACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCG] [-] EMBL CD059645 [ gCACC ACAC CTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCATC CGCACC ACAC CTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTT ] consensusID : consensus_9744#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [TTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTGCATCTCACCGACACGCTC] [+] EMBL CD135341 [TTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTGCATCTCACCGACACGCTC] consensusID : consensus_9744#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 418 fasta sequence [ACTGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCT-GC-GTCCGCT-CTAACAGTACCTAGGGTACCGT] [-] EMBL CD168894 [ACTGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCT GC GTCCGCT CTAACAGTACCTAGGGTACCGT] [-] EMBL CD168573 [ ATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTGTCTGGCAGT CGATGCTGTGGGTACCGAGct ] consensusID : consensus_9744#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [GACTACTGTCTGGCGTGCGCGAGTCGGGCGTCCGTTGCACGTGCGGATACGCCGGTCGGCCAAGGTCACCAATATGTCCGCGCGCCATGCTGCACCGGACACGCTCAACCAAATCGTTGCCCGGTTCCGGTTGTGGCTGCAGTCTCTGCAAGCGCCTCAGACTGCCAAGTCGACTGGAGCGAACACAGACACACGTTGCGATTCTACCTGTGGTAGCACTTCACTTTGTGCGTCCGCTGTCAACTTGACCCAATGTCTCACCGAACACTTCGACTACCGACGCGGCGTCCGTCCCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCAGCGACACGCTCAACCAATCGTTCCCGTTCC] [-] EMBL CD060346 [GACTACTGTCTGGCGTGCGCGAGTCGGGCGTCCGTTGCACGTGCGGATACGCCGGTCGGCCAAGGTCACCAATATGTCCGCGCGCCATGCTGCACCGGACACGCTCAACCAAATCGTTGCCCGGTTCCGGTTGTGGCTGCAGTCTCTGCAAGCGCCTCAGACTGCCAAGTCGACTGGAGCGAACACAGACACACGTTGCGATTCTACCTGTGGTAGCACTTCACTTTGTGCGTCCGCTGTCAACTTGACCCAATGTCTCACCGAACACTTCGACTACCGACGCGGCGTCCGTCCCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCAGCGACACGCTCAACCAATCGTTCCCGTTCC] consensusID : consensus_9744#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence [TCAAATACGCCTTCACCAAGTTCACCATATTCCGCGTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTATGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTNTGCGTCCGTTCCACCTTGCCAGGTAAGAGCCCAACGA] [-] EMBL CD067700 [TCAAATACGCCTTCACCAAGTTCACCATATTCCGCGTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTATGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTNTGCGTCCGTTCCACCTTGCCAGGTAAGAGCCCAACGA] consensusID : consensus_9744#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 158 fasta sequence [ACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTC------GCAGTCGGTGATG-GCAGGGTACCGAGCTCG] [-] EMBL CD168526 [ACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTC GCAGTCGGTGATG GCAGGGTACCGAGCTCG] [-] EMBL CD168522 [ACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTC GCAGTCGGTGAAGTGCAGGGTACCGAGCTC ] [-] EMBL CD168586 [ ATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGATCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGGCAGTCGGTGATG GCAGGGTACCGAGCTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9744#0 NCGGCCTCCGGTACCCCGCTCTAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTG 60 consensus_9744#2 ------------------------------------------------------------ consensus_9744#4 ------------------------------------------------------------ consensus_9744#5 ------------------------------------------------------------ consensus_9744#1 ------------------------------------------------------------ consensus_9744#3 ------------------------------------------------------------ consensus_9744#6 ------------------------------------------------------------ consensus_9744#0 CAAGCGCCTCAGACTCCAATTCGACTAGAGCGAACACAGACACACGTTCCGATTCAACCT 120 consensus_9744#2 -------------------------TTCTGCGTCCGCTTCAACTTGCCCCAAT---GTCT 32 consensus_9744#4 ------------------------------------------------------------ consensus_9744#5 ------------------------------------------------------------ consensus_9744#1 ------------------------------------------------------------ consensus_9744#3 ------------------------------------------------------------ consensus_9744#6 ------------------------------------------------------------ consensus_9744#0 GTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTT 180 consensus_9744#2 CACCGAACACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTT 92 consensus_9744#4 -------------------------------------------------GACTACTGTCT 11 consensus_9744#5 ------------------------------------------------------------ consensus_9744#1 ------------------------------------------------------------ consensus_9744#3 ------------------------------------------------------------ consensus_9744#6 ------------------------------------------------------------ consensus_9744#0 CGACTGC-CGACTCGG-CTTCCGTCTCACCTTCAAATACACC--TTCACCAACTTCACCA 236 consensus_9744#2 CGACTGC-CGACTCGG-CTTCCGTCTCACCTTCAAATACGCC--TTCACCAACTTCACCA 148 consensus_9744#4 GGCGTGCGCGAGTCGGGCGTCCGTTGCACGTGCGGATACGCCGGTCGGCCAAGGTCACCA 71 consensus_9744#5 -------------------------------TCAAATACGCC--TTCACCAAGTTCACCA 27 consensus_9744#1 --CGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCC--TTCACCAACTTCACCA 56 consensus_9744#3 ------------------------------------------------------------ consensus_9744#6 ------------------------------------------------------------ consensus_9744#0 -TAT-TCCGC-CTCCATCT--CACCG-ACACGCTCAACCAA-TCGTTCCC--GTTCCGGT 287 consensus_9744#2 -TAT-TCCGC-CTCCATCT--CACCG-ACACGCTCAACCAA-TCGTTCCC--GTTCCGGT 199 consensus_9744#4 ATATGTCCGCGCGCCATGCTGCACCGGACACGCTCAACCAAATCGTTGCCCGGTTCCGGT 131 consensus_9744#5 -TAT-TCCGC-GTCCATCT--CACCG-ACACGCTCAACCAA-TCGTTCCC--GTTCCGGT 78 consensus_9744#1 -TAT-TCCGC-CTCCATCT--CACCG-ACACGCTCAACCAA-TCGTTCCC--GTTCCGGT 107 consensus_9744#3 -----ACTGC-CTCCATCT--CACCG-ACACGCTCAACCAA-TCGTTCCC--GTTCCGGT 48 consensus_9744#6 ------------------------------------ACCAA-TCGTTCCC--GTTCCGGT 21 ***** ***** ** ******** consensus_9744#0 TGTG-CTGCAGTCTCTGCAAGCGCCTCAGACT-CCAATTCGACTGGAGCGAACACAGACA 345 consensus_9744#2 TGTG-CTGCAGTCTCTGCAAGCGCCTCAGACT-CCAATTCGACTGGAGCGAACACAGACA 257 consensus_9744#4 TGTGGCTGCAGTCTCTGCAAGCGCCTCAGACTGCCAAGTCGACTGGAGCGAACACAGACA 191 consensus_9744#5 TGTG-CTGCAGTCTATGCAAGCGCCTCAGACT-CCAATTCGACTGGAGCGAACACAGACA 136 consensus_9744#1 TGTG-CTGCAGTCTCTGCAAGCGCCTCAGACT-CCAATTCGACTGGAGCGAACACAGACA 165 consensus_9744#3 TGTG-CTGCAGTCTCTGCAAGCGCCTCAGACT-CCAATTCGACTGGAGCGAACACAGACA 106 consensus_9744#6 TGTG-CTGCAGTCTCTGCAAGCGCCTCAGACT-CCAATTCGACTGGAGCGAACACAGACA 79 **** ********* ***************** **** ********************** consensus_9744#0 CACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCT-T-CAACTTGCCC 403 consensus_9744#2 CACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCT-T-CAACTTGCCC 315 consensus_9744#4 CACGTTGCGATTCTACCTGTGGTAGCACTTCACTTTGTGCGTCCGCTGT-CAACTTGACC 250 consensus_9744#5 CACGTTCCGATTCAACCTGTTCTACCACTTCACTTTNTGCGTCCGTT-C-CACCTTGCCA 194 consensus_9744#1 CACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTC--AACTTGCCC 223 consensus_9744#3 CACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTC--AACTTGCCC 164 consensus_9744#6 CACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCGCAGTCGGTGA 139 ****** ****** ****** ** *********** ******** * * * consensus_9744#0 CA-ATGCTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACG 462 consensus_9744#2 CA-ATG-TCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACG 373 consensus_9744#4 CA-ATG-TCTCACCGAACACTTCGACTACCGACGCGGCGTCCGTCCCACCTTCAAATACG 308 consensus_9744#5 GGTAAGAGCCCAACGA-------------------------------------------- 210 consensus_9744#1 CA-ATG-TCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTC------------- 268 consensus_9744#3 CA-ATG-TCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACG 222 consensus_9744#6 TG-GCA-GGGTACCGAGCTCG--------------------------------------- 158 * *** consensus_9744#0 CCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCC 522 consensus_9744#2 CCTTCACCAACTTCACCATATTCCGCCTGCATCTCACCGACACGCTC------------- 420 consensus_9744#4 CCTTCACCAACTTCACCATATTCCGCCTCCATCTCAGCGACACGCTCAACCAATCGTTCC 368 consensus_9744#5 ------------------------------------------------------------ consensus_9744#1 -----------------------------CATCTCACCGACACGCTCAACCAATCGTTCC 299 consensus_9744#3 CCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCC 282 consensus_9744#6 ------------------------------------------------------------ consensus_9744#0 CGTTCCGGTTGTGC---------------------------------------------- 536 consensus_9744#2 ------------------------------------------------------------ consensus_9744#4 CGTTCC------------------------------------------------------ 374 consensus_9744#5 ------------------------------------------------------------ consensus_9744#1 CGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCCCAGACTCCAATTCGACTGGAGCGAAC 359 consensus_9744#3 CGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAAC 342 consensus_9744#6 ------------------------------------------------------------ consensus_9744#0 ------------------------------------------------------------ consensus_9744#2 ------------------------------------------------------------ consensus_9744#4 ------------------------------------------------------------ consensus_9744#5 ------------------------------------------------------------ consensus_9744#1 ACAGACACACGTTCCGATTCAACCTGTTCTACCGCTTCACTTTCTGCGTCCGCTTCAACT 419 consensus_9744#3 ACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTCTAACA 402 consensus_9744#6 ------------------------------------------------------------ consensus_9744#0 ------------------------------------------------------------ consensus_9744#2 ------------------------------------------------------------ consensus_9744#4 ------------------------------------------------------------ consensus_9744#5 ------------------------------------------------------------ consensus_9744#1 TGCCCCAATGTCTCACGAACACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCT 479 consensus_9744#3 GTACCTAGGGTACCGT-------------------------------------------- 418 consensus_9744#6 ------------------------------------------------------------ consensus_9744#0 ----- consensus_9744#2 ----- consensus_9744#4 ----- consensus_9744#5 ----- consensus_9744#1 CACCG 484 consensus_9744#3 ----- consensus_9744#6 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||