These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9745#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 955 fasta sequence [GGACGGAAGTTGAAATTCAACAATATGAATATCTACCTTATTGGTATATTATGTATTGTGGGTTTGATTATTTCACAAGGGTCTACTGCTAACGGAAGTCCACTTGACGATCGATTCAATGATGTTAATACCATAAACAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGTATATCGAAGACAAAAACGTTGATATCCGCATAATTGGAAATAAGAAGGATAAACAGCCTACTCAGAAAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATATTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATATTTACTAG-AAGACG-ATG-ATACTTTAG-AACTCAACT-TGCCAAAATACTATTACGACAAATCAATAT-G-AAAATGGTTTTCAATACTTGGAAAAAGTACATAGTAACGTCAACTCATAACTT-GAAACTCAAATAATTAGCATAACTTAAT-GTTT-GTTTTAATCTGATATAAATTTTCAAC-ATTTGCATAAAATTATAAATAAAAACAAC] [+] EMBL SMANTIH [GGACGGAAGTTGAAATTCAACAATATGAATATCTACCTTATTGGTATATTATGTATTGTGGGTTTGATTATTTCACAAGGGTCTACTGCTAACGGAAGTCCACTTGACGATCGATTCAATGATGTTAATACCATAAACAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGTATATCGAAGACAAAAACGTTGATATCCGCATAATTGGAAATAAGAAGGATAAACAGCCTACTCAGAAAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATATTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATATTTACTAG AAGACG ATG ATACTTTAG AACTCAACT TGCCAAAATACTATTACGACAAATCAATAT G AAAATGGTTTTCAATACTTGGAAAAAGTACATAGTAACGTCAACTCATAACTT GAAACTCAAATAATTAGCATAACTTAAT GTTT GTTTTAATCTGATATAAATTTTCAAC ATTTGCATAAAATTATAAATAAAAACAA ] [+] EMBL BG931654 [ GTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGAC ] [-] EMBL BF440151 [ AAATCAACTATACTATATGGTCGAGAAGATTGAGCAAATTATGGAAAATTTACTAG AAGACG ATG ATACATTAG AACTCAACT TGCCAAAATACTATTACGACAAATCAATATAA AAAATGGTTATCAATACTTGGAAAAAGTACATAGAAACGTCAACTCATAACTT GAAACTCAAATAATTAGCATAACTTAAT GTTT GTATTAATCTGATATAAATTTTCAAC ATTAGCAAAAAATTATAAATAAAAACAAC] [+] EMBL SM636 [ TTACTAGNAGGACGAATGNATACTTTAGNAACTCAACTNGGCCAAAATACTATTACGACAAATCANTAT GAAAAATGGTTTTCAATACTTGGAAAAAGTACATAGTAACGTCAACTCATAACTTGGAAACTCAAATAATTAGCATAACTTAATGGTTTGGTTTTAATCTGATATAAATTCTCAACAATTTGCATAAAATTATAAATAA ] consensusID : consensus_9745#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 664 fasta sequence [GTTTAATTGGAATCTTCAGTTTGCTTATTTCACAAGAATATGGTTATTTGATTGATATAAAACATATAAACAGTCCAAATCAAAAACAATATGTAAGAGACAAAATGAATTTATTGAATGAATATTTAACTTCAAGAAATATCAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGCATATCGAAGACAAAAACGTTGATATCCGCATAATTGAAAATAAGAAGGATAAACACCCTACTCAGAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATTTTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATATTTACTAGAAGACGATGATACTTTAGAACTCAACTTGCCAAAATACTANTTACGAC-AATCAATATGAAAATGGTTTCCAATACTTGGAAAAAGTACATAGTAACGTCAACTCATAACTTGAAACTCANNAT-ATTAGCATAACTTAATGTTTGTTNTAATCTGATATAAATNTTCAACATTTGCATAAATTTATANNATAAACANAAC] [+] EMBL CD082523 [GTTTAATTGGAATCTTCAGTTTGCTTATTTCACAAGAATATGGTTATTTGATTGATATAAAACATATAAACAGTCCAAATCAAAAACAATATGTAAGAGACAAAATGAATTTATTGAATGAATATTTAACTTCAAGAAATATCAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGCATATCGAAGACAAAAACGTTGATATCCGCATAATTGAAAATAAGAAGGATAAACACCCTACTCAGAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATTTTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATATTTACTAGAAGACGATGATACTTTAGAACTCAACTTGCCAAAATACTANTTACGAC AATCAATATGAAAATGGTTTCCAATACTTGGAAAAAGTACATAGTAACGTCAACTCATAACTTGAAACTCANNAT ATTAGCATAACTTAATGTTTGTTNTAATCTGATATAAATNTTCAACATTTGCATAAATTTATANNATAAACAN ] [-] EMBL CD076118 [ CAAGAAATATCAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGCATATCGAAGACAAAAACGTTGATATCCGCATAATTGAAAATAAGAAGGATAAACACCCTACTCAGAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATTTTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATATTTACTAGAAGACGATGATACTTTAGAACTCAACTTGCCAAAATACTA TTACGACAAATCAATATGAAAATGGTTTCCAATACTTGGAAAAAGTACATAGTAACGTCAACTCATAACTTGAAACTCA AATAATTAGCATAACTTAATGTTTGTTTTAATCTGATATAAATTTTCAACATTTGCATAAAATTATA AATAAAAACAAC] [+] EMBL CD199867 [ AAGAACAACTCCCAAACCTACAACACCAGAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATTTTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATA ] consensusID : consensus_9745#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 606 fasta sequence [GAAATTCAACAATATGAATATCTACCTTATTGGTATATTATGTATTGTGGGTTTNATTATTTCACAAGGGTCTACTGCTAACGGAAGTCCACTTGACGATCGATTCAATGATGTTAATACCATAAACAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGTATATCGAAGACAATAAGAAGGATAAACAGCCTACTCAGAAAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATATTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATATTTACTAGAAGACGATGATACTTTAGAACTCAACTTGCCAAAATACTATTACGACAA] [+] EMBL SMT14386 [GAAATTCAACAATATGAATATCTACCTTATTGGTATATTATGTATTGTGGGTTTNATTATTTCACAAGGGTCTACTGCTAACGGAAGTCCACTTGACGATCGATTCAATGATGTTAATACCATAAACAAGAAACANTTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGTATATCGAAGACAATAAGANGGATAAACAGCCTACTCAGAAAACAACTCCCAAACCTACAACACCA ] [+] EMBL AY256907 [ TACCTTATTGGTATATTATGTATTGTGGGTTTGATTATTTCACAAGGGTCTACTGCTAACGGAAGTCCACTTGACGATCGATTCAATGATGTTAATACCATAAACAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGGAGTATATCGAAGACAATAAGAAGGATAAACACCCTACTCAGAAAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATATTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATATTTACTAGAAGACGATGATACTTTAGAACTCAACTTGCCAAAATACTATTACGACAA] [-] EMBL CD166648 [ TACCATAAACAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGTATATCGAAGACAATAAGAAGGATAAACAGCCTACTCAGAAAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGGACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACC AAGCTAAT AATGATGGtcgt ] consensusID : consensus_9745#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence [GGGTATTTACTAGGAGCGNANNACNNNNNNCTCACTGCCAATACTATTACGCAATCAATATGAAAATCGGTTTTCAATACTTGGCAAAAGTACATAGTAACGTCAACTCATAACTTGAACTCAATATTAGCATAACTTAATGTTTGCAGTTAATCTGATATAACTTCAACATTTCGATAAATATAATCAAC] [+] EMBL AA804144 [GGGTATTTACTAGGAGCGNANNACNNNNNNCTCACTGCCAATACTATTACGCAATCAATATGAAAATCGGTTTTCAATACTTGGCAAAAGTACATAGTAACGTCAACTCATAACTTGAACTCAATATTAGCATAACTTAATGTTTGCAGTTAATCTGATATAACTTCAACATTTCGATAAATATAATCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9745#1 GTTTAATTGGAATCTTCAGTTTGCTTATTTCACAAGAATATGGTTATTTGATTGATATAA 60 consensus_9745#3 ------------------------------------------------------------ consensus_9745#0 -----------GGACGGAAGTTGAAATTCAACAATATGAATATCTACCTTATTGGTATAT 49 consensus_9745#2 ----------------------GAAATTCAACAATATGAATATCTACCTTATTGGTATAT 38 consensus_9745#1 AACATATAAACAGTCCAAATCAAAAACAATATGTAAGAGACAAAATGAATTTATTGAATG 120 consensus_9745#3 ------------------------------------------------------------ consensus_9745#0 TATGTATTGTGGGTTTGATTATTTCACAAGGGTCTACTGCTAACGGAAGTCCACTTGACG 109 consensus_9745#2 TATGTATTGTGGGTTTNATTATTTCACAAGGGTCTACTGCTAACGGAAGTCCACTTGACG 98 consensus_9745#1 AATATTTAACTTCAAGAAATATCA------AGAAACAATTCACCGAAGAGGAATTTTCCA 174 consensus_9745#3 ------------------------------------------------------------ consensus_9745#0 ATCGATTCAATGATGTTAATACCATAAACAAGAAACAATTCACCGAAGAGGAATTTTCCA 169 consensus_9745#2 ATCGATTCAATGATGTTAATACCATAAACAAGAAACAATTCACCGAAGAGGAATTTTCCA 158 consensus_9745#1 GACTGATAAATTCCATGTTAAAGAAGCATATCGAAGACAAAAACGTTGATATCCGCATAA 234 consensus_9745#3 ------------------------------------------------------------ consensus_9745#0 GACTGATAAATTCCATGTTAAAGAAGTATATCGAAGACAAAAACGTTGATATCCGCATAA 229 consensus_9745#2 GACTGATAAATTCCATGTTAAAGAAGTATATCGAAGACAA-------------------- 198 consensus_9745#1 TTGAAAATAAGAAGGATAAACACCCTACTCAGAAAACCAGTGATACCCACACAATTAAAA 294 consensus_9745#3 ------------------------------------------------------------ consensus_9745#0 TTGGAAATAAGAAGGATAAACAGCCTACTCAGAAAACAACTCCCAAACCTACAACACCAA 289 consensus_9745#2 -------TAAGAAGGATAAACAGCCTACTCAGAAAACAACTCCCAAACCTACAACACCAA 251 consensus_9745#1 GAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTA 354 consensus_9745#3 ------------------------------------------------------------ consensus_9745#0 AGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAAC-A 348 consensus_9745#2 AGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAAC-A 310 consensus_9745#1 AGTCCATAGCCGATTTTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATC 414 consensus_9745#3 ------------------------------------------------------------ consensus_9745#0 ACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGAT 408 consensus_9745#2 ACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGAT 370 consensus_9745#1 CTCTATACTATATGGTCGAGAAGTTT-GTGCAAATTATGGGATATTTACTAGAAGA--CG 471 consensus_9745#3 ---------------------------------------GGGTATTTACTAGGAGC--GN 19 consensus_9745#0 ACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGA 468 consensus_9745#2 ACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGA 430 * * ** * consensus_9745#1 ATGATACTTTAGAA---------------------------------------------- 485 consensus_9745#3 ANNACNNNNNN------------------------------------------------- 30 consensus_9745#0 ACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACA 528 consensus_9745#2 ACGTCAGACAAA------------------------------------------------ 442 * consensus_9745#1 ------------------------------------------------------------ consensus_9745#3 ------------------------------------------------------------ consensus_9745#0 CCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGA 588 consensus_9745#2 ------------------------------------------------------------ consensus_9745#1 ------------------------------------------------------CTCAAC 491 consensus_9745#3 ------------------------------------------------------CTCA-- 34 consensus_9745#0 ACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAG 648 consensus_9745#2 ------------------------------------------------------CCTAAG 448 * * consensus_9745#1 TTGCCAAAATACTANTTACGACAATCAATATGAAAAT-GGTTTCCAATACTTGGAAAAAG 550 consensus_9745#3 CTGCCAA--TACTATT-ACG-CAATCAATATGAAAATCGGTTTTCAATACTTGGCAAAAG 90 consensus_9745#0 TCCATAGC-CGATATTTTCT-TAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATC 706 consensus_9745#2 TCCATAGC-CGATATTTTCT-TAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATC 506 * ** * * ******** * ** * * * * * *** consensus_9745#1 TACATAGTAACGTCAACTCATAACTTGAAACTCANNATATTAGCATAACTTAATGTTTGT 610 consensus_9745#3 TACATAGTAACGTCAACTCATAACTTGAA---CTCAATATTAGCATAACTTAATGTTTGC 147 consensus_9745#0 CTCTATACTATATGGTCGAGAAGTTTGTG----CAAATTATGGGATA-TTTACTAGAAGA 761 consensus_9745#2 CTCTATACTATATGGTCGAGAAGTTTGTG----CAAATTATGGGATA-TTTACTAGAAGA 561 * * * * * *** ** * * *** *** * * consensus_9745#1 TNT-AATCTGATATAAATNTTCAACATTTGCATAAATTTATANNATAAACANAAC----- 664 consensus_9745#3 AGTTAATCTGATATAA--CTTCAACATTTCGATAAATATAATCAAC-------------- 191 consensus_9745#0 CGATGATACTTTAGAA---CTCAACTTGCCAAAATACTATTACGACAAATCAATATGAAA 818 consensus_9745#2 CGATGATACTTTAGAA---CTCAACTTGCCAAAATACTATTACGACAA------------ 606 ** ** ** ***** * * * * * consensus_9745#1 ------------------------------------------------------------ consensus_9745#3 ------------------------------------------------------------ consensus_9745#0 ATGGTTTTCAATACTTGGAAAAAGTACATAGTAACGTCAACTCATAACTTGAAACTCAAA 878 consensus_9745#2 ------------------------------------------------------------ consensus_9745#1 ------------------------------------------------------------ consensus_9745#3 ------------------------------------------------------------ consensus_9745#0 TAATTAGCATAACTTAATGTTTGTTTTAATCTGATATAAATTTTCAACATTTGCATAAAA 938 consensus_9745#2 ------------------------------------------------------------ consensus_9745#1 ----------------- consensus_9745#3 ----------------- consensus_9745#0 TTATAAATAAAAACAAC 955 consensus_9745#2 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||