These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9747#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1599 fasta sequence [TCGACACTTCCCCGTTGAAGGCATAGATTTGTATCCTCAATCACTTGGAGAGGTTATTTCTGATTTGGTGTCAGAAGGTGTACTAGAACCAGTAATTCCAAACAGAAGTATCTTGGGCAATATTTTTACGGCCTTCTCGTATGTTGTACACAAGCCAATATCATGGGCATATCACTACTTAAATGGTCAGCCATCATCTAATCCATTGGAGACTGATACATCGGATCAGCAGTTTGTGTTCAGTCAGTTCGCTGAAAATTCCGCTATGGAATTTTTGTCTTGGTTTCATGACAATTACCGTGACCAGAGGTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTTTATTCCCATGCGGCCACTCGTGAATACATATTTGATTTATTGAGTAATATCAAACACTGCGTTTCTGTGGAAACCACATCTACTTCAGATTCCCAACCGATTCAGATTATTCGCGTTGGTGAAGATATTAATAGCCGGCCGAACAAACCAACTAATTCAGACGCTGCAAAAATAGAATCTTCTGCACTGAGTGGGATTGTTCAACTCAAATCTACTATTAAACAACTTGAAAATGAAGAGAAAAGATTGGAAACCGTTATAGAACAGCGTCGAAACCATATCAAGTCCTTATTGTCAGATAAAAGGAATTCAGAAGCAAAATCTCTATTACGTCGTACGAAGGTGTTAGAGAAATCTCTAGAACAAAAGCAATTACAACTTAATAATCTGGAGACAATGT-TGATTGATATAGAATCTGCAACAGAAAACAGGAATATTGTACTCGTTCTAAATAGTGTTAATGAAGCTCTCAGACAAGCTGTTGGAGGATCTAATGCTTTAAGTAAAGCAG-AAGGTGTAATGAATGACGTAATGGATAGAATTCAAGAAAGTCAATATATCTCAGATGTTGTTTCCAGTTTTGGACGTACCTCTTTTGGATTGGAAGATATGAGCGATTTGGAACAAGAGCTTGACAATTTCCTTGTTGGACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGAACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATTATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCATTGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAAATTCTAGTATAAAACATGAGGAGAATATGAGAAATCTTTTGTATTGATTCAGAAATCTATCATACATGTATGTAACTAAATATTTTCCATATTGTTTTTTCTTTTGTCTTTTTAAATTATAACATTTTACAATGATATACTTTGTTTTATTTCAATAACTCTATAATAACTGTCGATATTATGTTAAACTATATCCTCTTCACTGGATTACAACGCCTCTTATATGAAATCACAACAAACATTAGAAATAATAACTGTCATTTCCAAAATCTTAATAATTGACGCTTTTCTGTTTATGATATTTATATT-CTAAGGATAAACATATTTCTAACTAAAGAC] [+] EMBL CD082866 [TCGACACTTCCCCGTTGAAGGCATAGATTTGTATCCTCAATCACTTGGAGAGGTTATTTCTGATTTGGTGTCAGAAGGTGTACTAGAACCAGTAATTCCAAACAGAAGTATCTTGGGCAATATTTTTACGGCCTTCTCGTATGTTGTACACAAGCCAATATCATGGGCATATCACTACTTAAATGGTCAGCCATCATCTAATCCATTGGAGACTGATACATCGGATCAGCAGTTTGTGTTCAGTCAGTTCGCTGAAAATTCCGCTATGGAATTTTTGTCTTGGTTTCATGACAATTACCGTGACCAGAGGTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTTTATTCCCATGCGGCCACTCGTGAATACATATTTGATTTATTGAGTAATATCAAACACTGCGTTTCTGTGGAAACCACATCTACTTCAGATTCCCAACCGATTCAGATTATTCGCGTTGGTGAAGATATTAATAGCCGGCCGAACAAACCAACTAATTCAGACGCTGCANAAATAGAATCTTCTGCACTGAGTGGGATTGTTCAACTCAAATCTACTATTAAACAACTTGAna ] [-] EMBL CD202426 [ ATTTGTATCCTCAATCACTTGGAGAGGTTATTTCTGATTTGGTGTCAGAAGGTGTACTAGAACCAGTAATTCCAAACAGAAGTATCTTGGGCAATATTTTTACGGCCTTCTCGTATGTTGTACACAAGCCAATATCATGGGCATATCACTACTTAAATGGTCAGCCATCATCTAATCCATTGGAGACTGATACATCGGATCAGCAGTTTGTGTTCAGTCAGTTCGCTGAAAATTCCGCTATGGAATTTTTGTCTTGGTTTCATGACAATTACCGTGACCAGAGGTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTTTATTCCCATACGGCCACTCGTGAATACACATTTGATTTATTGAGTAATATCACACACTGCGTGTCTGTGGAAACCACATATACTTCAGATTCTCACCCGATTCAGATTATTTGCGTTGGTGAAGATATTAATAGCCGGCGGCACAAcc ] [+] EMBL CD061224 [ TATCATGGGCATATCACTACTTAAATGGTCAGCCATCATCTAATCCATTGGAGACTGATACATCGGATCAGCAGTTTGTGTTCAGTCAGTTCGCTGAAAATTCCGCTATGGAATTTTTGTCTTGGTTTCATGACAATTACCGTGACCAGAGGTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTTTATTCCCATGCGGCCACTCGTGAATACATATTTGATTTATTGAGTAATATCAAACACTGCGTTTCTGTGGAAACCACATCTACTTCAGATTCCCAACCGATTCAGATTATTCGCGTTGGTGAAGATATTAATAGCCGGCCGAACAAACCAACTAATTCAGACGCTGCAAAAA ] [+] EMBL CD195988 [ CATTGGAGACTGATACATCGGATCAGCAGATTGTGTTCAGTCAGTTCGCTGAAAATTCCGCTATGGAATTTTTGTCTTGGGTTCATGACAATTACCGTGACCAGAGCTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTTTATTCCCATGCGGCCACTCGTGAATACATATTTGATTTATTGAGCATGATC AACACT ] [+] EMBL CD082460 [ TTCATGACAATTACCGTGACCAGAGGTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTTTATTCCCATGCGGCCACTCGTGAATACATATTTGATTTATTGAGTAATATCAAACACTGCGTTTCTGTGGAAACCACATCTACTTCAGATTCCCAACCGATTCAGATTATTCGCGTTGGTGAAGATATTAATAGCCGGCCGAACAAACCAACTAATTCAGACGCTGCAAAAATAGAATCTTCTGCACTGAGTGGGATTGTTCAACTCAAATCTACTATTAAACAACTTGAAAATGAAGAGAAAAGATTGGAAACCGTTATAGAACAGCGTCGAAACCATATCAAGTCCTTATTGTCAGATAAAAGGAATTCAGAAGCAAAATCTCTATTACGTCGTACGAAGGTGTTAGAGAAATCTCTAGAACAAAAGCAATTACAACTTAATAATCTGGAGACAATGT TGATTGATATAGAATCTGCAACAGAAAACAGGAATATTGTACTCGTTCTAAATAGTGTTAATGAAGCTCTCAGACAAGCTGTTGGAGGATCTAATGCTTTAAGTAAAGCAGAAAGGTGTA ] [-] EMBL CD153303 [ GAGGTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTATATTCCCATGCGGCCACTCGTGAATACATATNTGATATATTGAGTAATATCAAACACTGCGTTTCTGTGGAAACCACATCTACTTCAGATTCCCAACCGATTCAGATTATTCGCGTTGGTGAAGATATTAATAGCCGGCCGAACAAACCAACTAATTCAGACGCTGCAAAAATAGAATCTTCTGCACTGAGTGGGATTGTTCAACTCAAATCTACTATTAAACAACTTGAAAATGAAGAGAAAAGATTGGAAACCGTTATAGAACAGCGTCGAAACCATATCAAGTCCTTATTGTCAGATAAAAGGAATTCAGAAGCAAAATCTCTATTACGTCGTACGAAGGTGTTAGAGAAATCTCTAGAACAAAAGCAATTACAACTTAATAATCTGGAGACAATGT TGATTGATATAGAATCTGCAACAGAAAACAGGAATATTGTACTCGTTCTAAATAGTGTTAATGAAGCTCTCAGACAAGCTGTTGGAGGATCTAA ] [-] EMBL CD153296 [ GTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTTTATTCCCATGCGGCCACTCGTGAATACATATTTGATTCATTGAGTAATATCAAACACTGCGTTTCTGTGGAAACCACATCTACTTCAGATTCCCAACCGATTCAGATTATTCGCGTTGGTGAAGATATTAATAGCCGGCCGAACAAACCAACTAATTCAGACGCTGCAAAAATAGAATCTTCTGCACTGAGTGGGATTGTTCAACTCAAATCTACTATTAAACAACTTGAAAATGAAGAGAAAAGATTGGAAACCGTTATAGAACAGCGTCGAAACCATATCAAGTCCTTATTGTCAGATAAAAGGAATTCAGAAGCAAAATCTCTATTACGTCGTACGAAGGTGTTAGAGAAATCTCTAGAACAAAAGCAATTACAACTTAATAATCTGGAGACAATGT TGATTGATATAGAATCTGCAACAGAAAACAGGAATATTGTACTCGTTCTAAATAGTGTTAATGAAGCTCTCAGACAAGCTGTTGGAGGATCTAA ] [+] EMBL CD082414 [ cAGCAATTACAACTTAATAATCTGGAGAC ATCTCNGATTGATATAGAATCCGCAACAGAAAACAGGAATATTGTACTCGTTCTAAATAGTGTTAATGAAGCTCTCAGACAAGCTGTTGGAGGATCTAATGCTTTAAGTAAAGCAG AAGGTGTAATGAATGACGTAATGGATAGAATTCAAGAAAGTCAATATATCTCAGATGTTGTTTCCAGTTTTGGACGTACCTCTTTTGGATTGGAAGATATGAGCGATTTGGAACAAGAGCTTGACAATTTCCTTGTTGGACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGAACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATTATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCATTGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAAATTCTAGTATAAAACATGAGGAGAATATGAGAAATCTTTTGTATTGATTCAGAAATCTATCATACATGTATGTAACTAAATATTNTCCATA ] [-] EMBL CD076452 [ GGAACAAGAGCTTGACAATTTCCTTGTTGGACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGAACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATTATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCATTGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAAATTCTAGTATAAAACATGAGGAGAATATGAGAAATCTTTTGTATTGATTCAGAAATCTATCATACATGTATGTAACTAAATATTTTCCATATTGTTTTTTCTTTTGTCTTTTTAAATTATAACATTTTACAATGATATACTTTGTTTTATTTCAATAACTCTATAATAACTGTCGATATTATGTTAAACTATATCCTCTTCACTGGATTACAACGCCTCTTATATGAAATCACAACAAACATTAGAAATAATAACTGTCATTTCCAAAATCTTAATAATTGACGCTTTTCTGTTTATGATATTTATATT CTAAGGATAAACATATTTCTAACTAAAGAC] [-] EMBL CD076059 [ ccTGTGGGACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGAACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATTATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCATTGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAAATTCTAGTATAAAACATGAGGAGAATATGAGAAATCTTTTGTATTGATTCAGAAATCTATCATACATGTATGTAACTAAATATTTTCCATATTGTTTTTTCTTTTGTCTTTTTAAATTATAACATTTTACAATGATATACTTTGTTTTATTTCAATAACTCTATAATAACTGTCGATATTATGTTAAACTATATTCTCTTCACTGGATTACAACGCCTCTTATATGAAATCACAACAAACATTAGAAATAATAACTGTCATTTCCAAAATCTTAATAATTGACGCTTTTCTGTTTATGATATTTATATTGCTAAGGATAAACATATTTATAACTAAAGAC] consensusID : consensus_9747#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [CGGCACGAGGTTTTGGATTGGAAGATATGAGCGATTTGGAACAAGAGCTTGACAATTTCCTTGTTGGACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGAACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATTATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCATTGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAAATT] [+] EMBL CD078219 [CGGCACGAGGTTTTGGATTGGAAGATATGAGCGATTTGGAACAAGAGCTTGACAATTTCCTTGTTGGACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGAACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATTATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCATTGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9747#0 TCGACACTTCCCCGTTGAAGGCATAGATTTGTATCCTCAATCACTTGGAGAGGTTATTTC 60 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 TGATTTGGTGTCAGAAGGTGTACTAGAACCAGTAATTCCAAACAGAAGTATCTTGGGCAA 120 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 TATTTTTACGGCCTTCTCGTATGTTGTACACAAGCCAATATCATGGGCATATCACTACTT 180 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 AAATGGTCAGCCATCATCTAATCCATTGGAGACTGATACATCGGATCAGCAGTTTGTGTT 240 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 CAGTCAGTTCGCTGAAAATTCCGCTATGGAATTTTTGTCTTGGTTTCATGACAATTACCG 300 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 TGACCAGAGGTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTT 360 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 GTCAAACTTTTATTCCCATGCGGCCACTCGTGAATACATATTTGATTTATTGAGTAATAT 420 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 CAAACACTGCGTTTCTGTGGAAACCACATCTACTTCAGATTCCCAACCGATTCAGATTAT 480 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 TCGCGTTGGTGAAGATATTAATAGCCGGCCGAACAAACCAACTAATTCAGACGCTGCAAA 540 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 AATAGAATCTTCTGCACTGAGTGGGATTGTTCAACTCAAATCTACTATTAAACAACTTGA 600 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 AAATGAAGAGAAAAGATTGGAAACCGTTATAGAACAGCGTCGAAACCATATCAAGTCCTT 660 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 ATTGTCAGATAAAAGGAATTCAGAAGCAAAATCTCTATTACGTCGTACGAAGGTGTTAGA 720 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 GAAATCTCTAGAACAAAAGCAATTACAACTTAATAATCTGGAGACAATGTTGATTGATAT 780 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 AGAATCTGCAACAGAAAACAGGAATATTGTACTCGTTCTAAATAGTGTTAATGAAGCTCT 840 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 CAGACAAGCTGTTGGAGGATCTAATGCTTTAAGTAAAGCAGAAGGTGTAATGAATGACGT 900 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 AATGGATAGAATTCAAGAAAGTCAATATATCTCAGATGTTGTTTCCAGTTTTGGACGTAC 960 consensus_9747#1 --------------------------------------------------CGGCACGAGG 10 * *** consensus_9747#0 CTCTTTTGGATTGGAAGATATGAGCGATTTGGAACAAGAGCTTGACAATTTCCTTGTTGG 1020 consensus_9747#1 ---TTTTGGATTGGAAGATATGAGCGATTTGGAACAAGAGCTTGACAATTTCCTTGTTGG 67 ********************************************************* consensus_9747#0 ACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGA 1080 consensus_9747#1 ACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGA 127 ************************************************************ consensus_9747#0 ACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATT 1140 consensus_9747#1 ACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATT 187 ************************************************************ consensus_9747#0 ATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCAT 1200 consensus_9747#1 ATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCAT 247 ************************************************************ consensus_9747#0 TGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAA 1260 consensus_9747#1 TGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAA 307 ************************************************************ consensus_9747#0 ATTCTAGTATAAAACATGAGGAGAATATGAGAAATCTTTTGTATTGATTCAGAAATCTAT 1320 consensus_9747#1 ATT--------------------------------------------------------- 310 *** consensus_9747#0 CATACATGTATGTAACTAAATATTTTCCATATTGTTTTTTCTTTTGTCTTTTTAAATTAT 1380 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 AACATTTTACAATGATATACTTTGTTTTATTTCAATAACTCTATAATAACTGTCGATATT 1440 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 ATGTTAAACTATATCCTCTTCACTGGATTACAACGCCTCTTATATGAAATCACAACAAAC 1500 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 ATTAGAAATAATAACTGTCATTTCCAAAATCTTAATAATTGACGCTTTTCTGTTTATGAT 1560 consensus_9747#1 ------------------------------------------------------------ consensus_9747#0 ATTTATATTCTAAGGATAAACATATTTCTAACTAAAGAC 1599 consensus_9747#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||