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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9747#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1599 fasta sequence
[TCGACACTTCCCCGTTGAAGGCATAGATTTGTATCCTCAATCACTTGGAGAGGTTATTTCTGATTTGGTGTCAGAAGGTGTACTAGAACCAGTAATTCCAAACAGAAGTATCTTGGGCAATATTTTTACGGCCTTCTCGTATGTTGTACACAAGCCAATATCATGGGCATATCACTACTTAAATGGTCAGCCATCATCTAATCCATTGGAGACTGATACATCGGATCAGCAGTTTGTGTTCAGTCAGTTCGCTGAAAATTCCGCTATGGAATTTTTGTCTTGGTTTCATGACAATTACCGTGACCAGAGGTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTTTATTCCCATGCGGCCACTCGTGAATACATATTTGATTTATTGAGTAATATCAAACACTGCGTTTCTGTGGAAACCACATCTACTTCAGATTCCCAACCGATTCAGATTATTCGCGTTGGTGAAGATATTAATAGCCGGCCGAACAAACCAACTAATTCAGACGCTGCAAAAATAGAATCTTCTGCACTGAGTGGGATTGTTCAACTCAAATCTACTATTAAACAACTTGAAAATGAAGAGAAAAGATTGGAAACCGTTATAGAACAGCGTCGAAACCATATCAAGTCCTTATTGTCAGATAAAAGGAATTCAGAAGCAAAATCTCTATTACGTCGTACGAAGGTGTTAGAGAAATCTCTAGAACAAAAGCAATTACAACTTAATAATCTGGAGACAATGT-TGATTGATATAGAATCTGCAACAGAAAACAGGAATATTGTACTCGTTCTAAATAGTGTTAATGAAGCTCTCAGACAAGCTGTTGGAGGATCTAATGCTTTAAGTAAAGCAG-AAGGTGTAATGAATGACGTAATGGATAGAATTCAAGAAAGTCAATATATCTCAGATGTTGTTTCCAGTTTTGGACGTACCTCTTTTGGATTGGAAGATATGAGCGATTTGGAACAAGAGCTTGACAATTTCCTTGTTGGACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGAACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATTATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCATTGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAAATTCTAGTATAAAACATGAGGAGAATATGAGAAATCTTTTGTATTGATTCAGAAATCTATCATACATGTATGTAACTAAATATTTTCCATATTGTTTTTTCTTTTGTCTTTTTAAATTATAACATTTTACAATGATATACTTTGTTTTATTTCAATAACTCTATAATAACTGTCGATATTATGTTAAACTATATCCTCTTCACTGGATTACAACGCCTCTTATATGAAATCACAACAAACATTAGAAATAATAACTGTCATTTCCAAAATCTTAATAATTGACGCTTTTCTGTTTATGATATTTATATT-CTAAGGATAAACATATTTCTAACTAAAGAC]
[+] EMBL CD082866 [TCGACACTTCCCCGTTGAAGGCATAGATTTGTATCCTCAATCACTTGGAGAGGTTATTTCTGATTTGGTGTCAGAAGGTGTACTAGAACCAGTAATTCCAAACAGAAGTATCTTGGGCAATATTTTTACGGCCTTCTCGTATGTTGTACACAAGCCAATATCATGGGCATATCACTACTTAAATGGTCAGCCATCATCTAATCCATTGGAGACTGATACATCGGATCAGCAGTTTGTGTTCAGTCAGTTCGCTGAAAATTCCGCTATGGAATTTTTGTCTTGGTTTCATGACAATTACCGTGACCAGAGGTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTTTATTCCCATGCGGCCACTCGTGAATACATATTTGATTTATTGAGTAATATCAAACACTGCGTTTCTGTGGAAACCACATCTACTTCAGATTCCCAACCGATTCAGATTATTCGCGTTGGTGAAGATATTAATAGCCGGCCGAACAAACCAACTAATTCAGACGCTGCANAAATAGAATCTTCTGCACTGAGTGGGATTGTTCAACTCAAATCTACTATTAAACAACTTGAna ]
[-] EMBL CD202426 [ ATTTGTATCCTCAATCACTTGGAGAGGTTATTTCTGATTTGGTGTCAGAAGGTGTACTAGAACCAGTAATTCCAAACAGAAGTATCTTGGGCAATATTTTTACGGCCTTCTCGTATGTTGTACACAAGCCAATATCATGGGCATATCACTACTTAAATGGTCAGCCATCATCTAATCCATTGGAGACTGATACATCGGATCAGCAGTTTGTGTTCAGTCAGTTCGCTGAAAATTCCGCTATGGAATTTTTGTCTTGGTTTCATGACAATTACCGTGACCAGAGGTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTTTATTCCCATACGGCCACTCGTGAATACACATTTGATTTATTGAGTAATATCACACACTGCGTGTCTGTGGAAACCACATATACTTCAGATTCTCACCCGATTCAGATTATTTGCGTTGGTGAAGATATTAATAGCCGGCGGCACAAcc ]
[+] EMBL CD061224 [ TATCATGGGCATATCACTACTTAAATGGTCAGCCATCATCTAATCCATTGGAGACTGATACATCGGATCAGCAGTTTGTGTTCAGTCAGTTCGCTGAAAATTCCGCTATGGAATTTTTGTCTTGGTTTCATGACAATTACCGTGACCAGAGGTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTTTATTCCCATGCGGCCACTCGTGAATACATATTTGATTTATTGAGTAATATCAAACACTGCGTTTCTGTGGAAACCACATCTACTTCAGATTCCCAACCGATTCAGATTATTCGCGTTGGTGAAGATATTAATAGCCGGCCGAACAAACCAACTAATTCAGACGCTGCAAAAA ]
[+] EMBL CD195988 [ CATTGGAGACTGATACATCGGATCAGCAGATTGTGTTCAGTCAGTTCGCTGAAAATTCCGCTATGGAATTTTTGTCTTGGGTTCATGACAATTACCGTGACCAGAGCTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTTTATTCCCATGCGGCCACTCGTGAATACATATTTGATTTATTGAGCATGATC AACACT ]
[+] EMBL CD082460 [ TTCATGACAATTACCGTGACCAGAGGTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTTTATTCCCATGCGGCCACTCGTGAATACATATTTGATTTATTGAGTAATATCAAACACTGCGTTTCTGTGGAAACCACATCTACTTCAGATTCCCAACCGATTCAGATTATTCGCGTTGGTGAAGATATTAATAGCCGGCCGAACAAACCAACTAATTCAGACGCTGCAAAAATAGAATCTTCTGCACTGAGTGGGATTGTTCAACTCAAATCTACTATTAAACAACTTGAAAATGAAGAGAAAAGATTGGAAACCGTTATAGAACAGCGTCGAAACCATATCAAGTCCTTATTGTCAGATAAAAGGAATTCAGAAGCAAAATCTCTATTACGTCGTACGAAGGTGTTAGAGAAATCTCTAGAACAAAAGCAATTACAACTTAATAATCTGGAGACAATGT TGATTGATATAGAATCTGCAACAGAAAACAGGAATATTGTACTCGTTCTAAATAGTGTTAATGAAGCTCTCAGACAAGCTGTTGGAGGATCTAATGCTTTAAGTAAAGCAGAAAGGTGTA ]
[-] EMBL CD153303 [ GAGGTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTATATTCCCATGCGGCCACTCGTGAATACATATNTGATATATTGAGTAATATCAAACACTGCGTTTCTGTGGAAACCACATCTACTTCAGATTCCCAACCGATTCAGATTATTCGCGTTGGTGAAGATATTAATAGCCGGCCGAACAAACCAACTAATTCAGACGCTGCAAAAATAGAATCTTCTGCACTGAGTGGGATTGTTCAACTCAAATCTACTATTAAACAACTTGAAAATGAAGAGAAAAGATTGGAAACCGTTATAGAACAGCGTCGAAACCATATCAAGTCCTTATTGTCAGATAAAAGGAATTCAGAAGCAAAATCTCTATTACGTCGTACGAAGGTGTTAGAGAAATCTCTAGAACAAAAGCAATTACAACTTAATAATCTGGAGACAATGT TGATTGATATAGAATCTGCAACAGAAAACAGGAATATTGTACTCGTTCTAAATAGTGTTAATGAAGCTCTCAGACAAGCTGTTGGAGGATCTAA ]
[-] EMBL CD153296 [ GTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTTGTCAAACTTTTATTCCCATGCGGCCACTCGTGAATACATATTTGATTCATTGAGTAATATCAAACACTGCGTTTCTGTGGAAACCACATCTACTTCAGATTCCCAACCGATTCAGATTATTCGCGTTGGTGAAGATATTAATAGCCGGCCGAACAAACCAACTAATTCAGACGCTGCAAAAATAGAATCTTCTGCACTGAGTGGGATTGTTCAACTCAAATCTACTATTAAACAACTTGAAAATGAAGAGAAAAGATTGGAAACCGTTATAGAACAGCGTCGAAACCATATCAAGTCCTTATTGTCAGATAAAAGGAATTCAGAAGCAAAATCTCTATTACGTCGTACGAAGGTGTTAGAGAAATCTCTAGAACAAAAGCAATTACAACTTAATAATCTGGAGACAATGT TGATTGATATAGAATCTGCAACAGAAAACAGGAATATTGTACTCGTTCTAAATAGTGTTAATGAAGCTCTCAGACAAGCTGTTGGAGGATCTAA ]
[+] EMBL CD082414 [ cAGCAATTACAACTTAATAATCTGGAGAC ATCTCNGATTGATATAGAATCCGCAACAGAAAACAGGAATATTGTACTCGTTCTAAATAGTGTTAATGAAGCTCTCAGACAAGCTGTTGGAGGATCTAATGCTTTAAGTAAAGCAG AAGGTGTAATGAATGACGTAATGGATAGAATTCAAGAAAGTCAATATATCTCAGATGTTGTTTCCAGTTTTGGACGTACCTCTTTTGGATTGGAAGATATGAGCGATTTGGAACAAGAGCTTGACAATTTCCTTGTTGGACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGAACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATTATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCATTGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAAATTCTAGTATAAAACATGAGGAGAATATGAGAAATCTTTTGTATTGATTCAGAAATCTATCATACATGTATGTAACTAAATATTNTCCATA ]
[-] EMBL CD076452 [ GGAACAAGAGCTTGACAATTTCCTTGTTGGACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGAACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATTATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCATTGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAAATTCTAGTATAAAACATGAGGAGAATATGAGAAATCTTTTGTATTGATTCAGAAATCTATCATACATGTATGTAACTAAATATTTTCCATATTGTTTTTTCTTTTGTCTTTTTAAATTATAACATTTTACAATGATATACTTTGTTTTATTTCAATAACTCTATAATAACTGTCGATATTATGTTAAACTATATCCTCTTCACTGGATTACAACGCCTCTTATATGAAATCACAACAAACATTAGAAATAATAACTGTCATTTCCAAAATCTTAATAATTGACGCTTTTCTGTTTATGATATTTATATT CTAAGGATAAACATATTTCTAACTAAAGAC]
[-] EMBL CD076059 [ ccTGTGGGACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGAACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATTATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCATTGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAAATTCTAGTATAAAACATGAGGAGAATATGAGAAATCTTTTGTATTGATTCAGAAATCTATCATACATGTATGTAACTAAATATTTTCCATATTGTTTTTTCTTTTGTCTTTTTAAATTATAACATTTTACAATGATATACTTTGTTTTATTTCAATAACTCTATAATAACTGTCGATATTATGTTAAACTATATTCTCTTCACTGGATTACAACGCCTCTTATATGAAATCACAACAAACATTAGAAATAATAACTGTCATTTCCAAAATCTTAATAATTGACGCTTTTCTGTTTATGATATTTATATTGCTAAGGATAAACATATTTATAACTAAAGAC]
consensusID : consensus_9747#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence
[CGGCACGAGGTTTTGGATTGGAAGATATGAGCGATTTGGAACAAGAGCTTGACAATTTCCTTGTTGGACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGAACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATTATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCATTGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAAATT]
[+] EMBL CD078219 [CGGCACGAGGTTTTGGATTGGAAGATATGAGCGATTTGGAACAAGAGCTTGACAATTTCCTTGTTGGACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGAACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATTATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCATTGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9747#0 TCGACACTTCCCCGTTGAAGGCATAGATTTGTATCCTCAATCACTTGGAGAGGTTATTTC 60
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 TGATTTGGTGTCAGAAGGTGTACTAGAACCAGTAATTCCAAACAGAAGTATCTTGGGCAA 120
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 TATTTTTACGGCCTTCTCGTATGTTGTACACAAGCCAATATCATGGGCATATCACTACTT 180
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 AAATGGTCAGCCATCATCTAATCCATTGGAGACTGATACATCGGATCAGCAGTTTGTGTT 240
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 CAGTCAGTTCGCTGAAAATTCCGCTATGGAATTTTTGTCTTGGTTTCATGACAATTACCG 300
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 TGACCAGAGGTTATTACCACATTCAGCTGTGTATGATATAGAGCTTTTTAACTCAGCCTT 360
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 GTCAAACTTTTATTCCCATGCGGCCACTCGTGAATACATATTTGATTTATTGAGTAATAT 420
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 CAAACACTGCGTTTCTGTGGAAACCACATCTACTTCAGATTCCCAACCGATTCAGATTAT 480
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 TCGCGTTGGTGAAGATATTAATAGCCGGCCGAACAAACCAACTAATTCAGACGCTGCAAA 540
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 AATAGAATCTTCTGCACTGAGTGGGATTGTTCAACTCAAATCTACTATTAAACAACTTGA 600
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 AAATGAAGAGAAAAGATTGGAAACCGTTATAGAACAGCGTCGAAACCATATCAAGTCCTT 660
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 ATTGTCAGATAAAAGGAATTCAGAAGCAAAATCTCTATTACGTCGTACGAAGGTGTTAGA 720
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 GAAATCTCTAGAACAAAAGCAATTACAACTTAATAATCTGGAGACAATGTTGATTGATAT 780
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 AGAATCTGCAACAGAAAACAGGAATATTGTACTCGTTCTAAATAGTGTTAATGAAGCTCT 840
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 CAGACAAGCTGTTGGAGGATCTAATGCTTTAAGTAAAGCAGAAGGTGTAATGAATGACGT 900
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 AATGGATAGAATTCAAGAAAGTCAATATATCTCAGATGTTGTTTCCAGTTTTGGACGTAC 960
consensus_9747#1 --------------------------------------------------CGGCACGAGG 10
* ***
consensus_9747#0 CTCTTTTGGATTGGAAGATATGAGCGATTTGGAACAAGAGCTTGACAATTTCCTTGTTGG 1020
consensus_9747#1 ---TTTTGGATTGGAAGATATGAGCGATTTGGAACAAGAGCTTGACAATTTCCTTGTTGG 67
*********************************************************
consensus_9747#0 ACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGA 1080
consensus_9747#1 ACCAAAGAAACCATCACCTCCGGGAAAAACACAACCGAGCTTTGATGATTTAGAATCTGA 127
************************************************************
consensus_9747#0 ACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATT 1140
consensus_9747#1 ACTTGCTGCTCTTAAATTAGTAACAGATGAGGTAGCATCATTAACTGATCAAAATTCATT 187
************************************************************
consensus_9747#0 ATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCAT 1200
consensus_9747#1 ATCTTCTAAGCAAAACGCTGTCATCATTGATAAGTGAAGGATCTACTGCGATGTAACCAT 247
************************************************************
consensus_9747#0 TGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAA 1260
consensus_9747#1 TGTTTCGATTCCATGCTATTTCAGCATATCTAATCTACACTCTTGAGCTTTCACATCAAA 307
************************************************************
consensus_9747#0 ATTCTAGTATAAAACATGAGGAGAATATGAGAAATCTTTTGTATTGATTCAGAAATCTAT 1320
consensus_9747#1 ATT--------------------------------------------------------- 310
***
consensus_9747#0 CATACATGTATGTAACTAAATATTTTCCATATTGTTTTTTCTTTTGTCTTTTTAAATTAT 1380
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 AACATTTTACAATGATATACTTTGTTTTATTTCAATAACTCTATAATAACTGTCGATATT 1440
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 ATGTTAAACTATATCCTCTTCACTGGATTACAACGCCTCTTATATGAAATCACAACAAAC 1500
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 ATTAGAAATAATAACTGTCATTTCCAAAATCTTAATAATTGACGCTTTTCTGTTTATGAT 1560
consensus_9747#1 ------------------------------------------------------------
consensus_9747#0 ATTTATATTCTAAGGATAAACATATTTCTAACTAAAGAC 1599
consensus_9747#1 ---------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||