These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1103 fasta sequence [CCAANAATTCGGCACGAGGGCGGCACGAGGGTTATCGTCAACCCAAAAACCTCCGAAACCTAACCCTCACTGGAAACACCTTGAGCTTCAGAAACCAGGTGAAGAGTTACGTATAAGCAACCTCAAGGCTGGTGCAAAGTTCATTCACGAATCCAGATGTAGTCGGGAAAATATTGCTGTGATAATTGAACCAAACAATCATGAATCTGCAGCTTTTATTATTACATATTTCACTATTTTAAGTGGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAATGTAGAGAAAAATTAGATATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAATCGACTACACCAAAAGAATTACGTGATGAATTATTCAAAGGTACATCTGGTTATACAGAAGATAGATTAATTGAAGATTTACGTAAAATTTATCAATTAGCTGAATTAGATCCACCATCATCATCAGAAATTTTTTTGGAAACAAGACGTGAAAGCATAAAATTAGGATCACC-TACAACAAATAGTTCATCTAATCAATTATTTAAACGTTTATCCATTGATATAAATAAAAAAGAATCAATTAATGAGAAAAATATTAGTTCACCTAATCTAAATGATAAAACATCAGAACTAGTTGTAAATGAATCTGATCATGATATTAAACAAGATCCA-TCAACGACTATATCACATCATAATTATCATTCAACAGATCATAATAATTCTATATTAAATGATATGAAACATGATCTACATCAAGTGGATCAAATCAATAATAATAATAGTAAACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAG-AGATTGGTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACAC------ATAATAATAATAATAATCATGAAATTG-ATAATTATAATAATATAAATAAATTAAAATCGTCTAAAATAACAATTAGTTATGCTTTAACTCATGAATCTACAGAAGCTGATGCTGTTGATGAATATCTAAAAAATACTAGTGCAGATGAACGTGATCGATTAAGAAAACATGTAATCATTACACATGCTTATTCAAAAATTGATGATCATATTG] [+] EMBL CD082298 [CCAANAATTCGGCACGAGGGCGGCACGAGGGTTATCGTCAACCCAAAAACCTCCGAAACCTAACCCTCACTGGAAACACCTTGAGCTTCAGAAACCAGGTGAAGAGTTACGTATAAGCAACCTCAAGGCTGGTGCAAAGTTCATTCACGAATCCAGATGTAGTCGGGAAAATATTGCTGTGATAATTGAACCAAACAATCATGAATCTGCAGCTTTTATTATTACATATTTCACTATTTTAAGTGGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAATGTAGAGAAAAATTAGATATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAATCGACTACACCAAAAGAATTACGTGATGAATTATTCAAAGGTACATCTGGTTATACAGAAGATAGATTAATTGAAGATTTACGTAAAATTTATCAATTAGCTGAATTAGATCCACCATCATCATCAGAAATTTTTTTGGAAACAAGACGTGAAAGCATAAAATTAGGATCACC TACAACAAATAGTTCATCTAATCAATTATTTAAACGTTTATCCATTGATATAAATAAAAAAGAATCAATTAATGAGAAAAATATTAGTTCACCTAATCTAAATGATAAAACATCAGAACTAGTTGTAAATGAATCTGATCATGATATTAAACAAGATCCANTC ACGACTATATCACATCATAATT ] [+] EMBL AI976788 [ TTAATTGAAGATTTACGTAAAATTTATCAATTAGCTGAATTAGATCCACCATCATCATCAGAAATTTTTTTGGAAACAAGACGTGAAAGTATAAAATTAGGATCACC TACAACAAATAGTTCATCTAATCAATTATTTAAACGTTTATCCATTGATATAAATAAAAAAGAATCAATTAATGAGAAAAATATTAGTTCACCTAATCTAAATGATAAAACATCAGAACTAGTTGTAAATGAATCTGATCATGATATTAAACAAGATCCA TCAACGACTATATCACATCATAATTATCATTCAACAGATCATAATAATTCTATATTAAATGATATGAAACATGATCTACATCAAGTGGATCAAATCAATAATAATAATAGTAAACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAG AGATTGGTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACAC ATAATAATAATAATCATGAAATTG ATAATTATAATAATATAAATAAATTAAAATCGTCTAAAATAACAATTAGTTATGCTATAACTCATGAATCTACAGAAGCTGATGCTGTTG ] [-] EMBL CD075902 [ CACCNTACAACAAATAGTTCATCTAATCAATTATTTAAACGTTTATCCATTGATATAAATAAAAAAGAATCAATTAATGAGAAAAATATTAGTTCACCTAATCTAAATGATAAAACATCAGAACTAGTTGTAAATGAATCTGATCATGATATTAAACAAGATCCA TCAACGACTATATCACATCATAATTATCATTCAACAGATCATAATAATTCTATATTAAATGATATGAAACATGATCTACATCAAGTGGATCAAATCAATAATAATAATAGTAAACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAG AGATTGGTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACACATAATAATAATAATAATAATAATCATGAAATTG ATAATTATAATAATATAAATAAATTAAAATCGTCTAAAATAACAATTAGTTATGCTTTAACTCATGAATCTACAGAAGCTGATGCTGTTGATGAATATCTAAAAAATACTAGTGCAGATGAACGTGATCGATTAAGAAAACATGTAATCATTACACATGCTTATTCAAAAATTGATGATCATATTG] [+] EMBL SMAA14059 [ TGATCTACATCAAGTGGATCAAATCAATAATAATAATAGTAAACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAGAAGATTGGTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACAC ATAATAATAATAATAATCATGAAATTGAATAATTATAATAATATAAA ] [+] EMBL SMAA69066 [ AAAATGGTACCGTTCCTACTTCATATAATTATAATAAAG AGATTGGTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACAC ATAATAATAATAATAATCATGAAATTG ATAATTATAATAATATAAATAAATTAAAATCGTCTAAAATNACAATTAGTTATGCTTTAACTCATGAA ] consensusID : consensus_9750#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 526 fasta sequence [ATCTATTGGAAAAGTTTTAAATTACTTATATATAGTTGACCATGGTG-AAGCAACAACTGATTCTAATCTCAAGAAAGCTAAGATTACGTGCATGTTATCGTCAACCCAAAAACCTCCGAAACCTAACCCTCACTGGAAACACCTT-GAGCTTCAGAAACCAGGTGAAGAGTTACGTATAAGCAACCTCAAGGCTGGCGCAAAGTTCATTCACGAATCCAGATGTAGTCGGGAAAATATTGCTGTGATAATTGAACCAAACAATCATGAATCTGCAGC-TTTTATTAATACATATTTCACTATTTTAAGT-GGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAATGTAGAGAAAAATTAGATATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAATCGACTACACCAAAAGAATTACGTGATGAATTATTCAAAGGTACATCTGGTTATACAGAAGATAGATTAATTGAAGATTTACGTAAAATTTATCAATTAGCTGAATTAGATCCACCATCA] [+] EMBL SM613 [ATCTATTGGAAAAGTTTTAAATNACTTATATATAGNTGACCATGGTGAAAGCAACAACTGATTCTAATCTCAAGAAAGCTAAGATTACGTGCATGTTATCGCCAACCCAAAAACCTCCGAAACCTAACCCTCACTGGAAACACCTTGGAGCTTCAGAAACCAGGTGAAGAGTTACGTTTAAGCAACCTCAAGGCTGGCGCAAAGTTCATNCACGAATCCAGATGTAGTCGGGAAAATATTGCTGTGATAATTGAACCANACAATCATGAATCTGCAGCTTTTTATTATTACATATTCCACTATTTNANGTGGGACTACCTGTAGCATTANCTCGAAAAGCTGTTATGAAATG ] [+] EMBL CD168389 [ ATTGGAAAAGTTTTAAATTACTTATATATAGTTGACCATGGTG AAGCAACAACTGATTCTAATCTCAAGAAAGCTAAGATTACGTGCATGTTATCGTCAACCCAAAAACCTCCGAAACCTAACCCTCACTGGAAACACCTT GAGCTTCAGAAACCAGGTGAAGAGTTACGTATAAGCAACCTCAAGGCTGGTGCAAAGTTCATTCACGAATCCAGATGTAGTCGGGAAAATATTGCTGTGATAATTGAACCAAACAATCATGAATCTGCAGC TTTTATTAATACATATTTCACTATTCTAAGT GGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAATGTAGAGAAAAATTAGATATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAATCGACTACACCAAAAGAATTACGTGATGA ] [+] EMBL CD168376 [ ATTGGAAAAGTTTTAAATTACTTATATATAGTTGACCATGGTG AAGCAACAACTGATTCTAATCTCAAGAAAGCTAAGATTACGTGCATGTTATCGTCAACCCAAAAACCTCCGAAACCTAACCCTCACTGGAAACACCTT GAGCTTCAGAAACCAGGTGAAGAGTTACGTATAAGCAACCTCAAGGCTGGTGCAAAGTTCATTCACGAATCCAGATGTAGTCGGGAAAATATTGCTGTGATAATTGAACCAAACAATCATGAATCTGCAGC TTTTATTAATACATATTT ] [+] EMBL AI975265 [ AAGTTTTAAATTACTTATATATAGTTGACCATGGTG AAGCAACAACTGATTCTAATCTCAAGAAAGCTAAGATTACGTGCATGTTATCGTCAACCCAAAAACCTCCGAAACCTAACCCTCACTGGAAACACCTT GAGCTTCAGAAACCAGGTGAAGAGTTACGTATAAGCAACCTCAAGGCTGGCGCAAAGTTCATTCACGAATCCAGATGTAGTCGGGAAAATATTGCTGTGATAATTGAACCAAACAATCATGAATCTGCAGC TTTTATTATTACATATTTCACTATTTTAAGT GGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAATGTAGAGAAAAATTAGATATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAATCGACTACACCAAAAGAATTACGTGATGAATTATTCAAAGGTACATCTGGTTATACAGAAGATAGATTAATTGAAGATTTACGTAAAATTTATCAATTAGCTGAATTAGATCCACCATCA] [+] EMBL CD168390 [ TGGGATAATTGAACCAAACAATCATGAATCTGCAGC TTTTATTAATACATATTTCACTATTCTAAGT GGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAATGTAGAGAAAAATTAGATATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAATCGACTACACCAAAAGAATTACGTGATGAATTATTCAAA ] consensusID : consensus_9750#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [AAGGCGACTCCTAGAGGATCCCCGACGCATTCACATCATAATTATCATTCAACAGATCATAATAATTCTATATTAAATGATATGAAACATGATCTACATCAAGTGGATCAAATCAATAATAATAATAGTAGACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAGAGATTGGTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACACATAATAATAATAATCATGAAATTGATAATTATAATAATATAAATAAATTAAAATCGTCTAAAATAACAATTAGTTATGCTATAACTCATGAATCTACAGAAGCTGATGCTGTTGATGAATATTTAAAAAATACTAGTGCAGATGAACGTGATCGATTAAGAAAACATGTAATCATTACACATGCTTATTCAAAAATTGATGATCATATTGATCAGATATAAAAAAAAAAAATGGATAAT] [+] EMBL CD166800 [AAGGCGACTCCTAGAGGATCCCCGACGCATTCACATCATAATTATCATTCAACAGATCATAATAATTCTATATTAAATGATATGAAACATGATCTACATCAAGTGGATCAAATCAATAATAATAATAGTAGACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAGAGATTGGTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACACATAATAATAATAATCATGAAATTGATAATTATAATAATATAAATAAATTAAAATCGTCTAAAATAACAATTAGTTATGCTATAACTCATGAATCTACAGAAGCTGATGCTGTTGATGAATATTTAAAAAATACTAGTGCAGATGAACGTGATCGATTAAGAAAACATGTAATCATTACACATGCTTATTCAAAAATTGATGATCATATTGATCAGATATAAAAAAAAAAAATGGATAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9750#0 CCAANAATTCGGCACGAGGGCGGCACGAGGGTTATCGTCAACCCAAAAACCTCCGAAACC 60 consensus_9750#2 ------------------------------------------------------------ consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 TAACCCTCACTGGAAACACCTTGAGCTTCAGAAACCAGGTGAAGAGTTACGTATAAGCAA 120 consensus_9750#2 ------------------------------------------------------------ consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 CCTCAAGGCTGGTGCAAAGTTCATTCACGAATCCAGATGTAGTCGGGAAAATATTGCTGT 180 consensus_9750#2 ------------------------------------------------------------ consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 GATAATTGAACCAAACAATCATGAATCTGCAGCTTTTATTATTACATATTTCACTATTTT 240 consensus_9750#2 ------------------------------------------------------------ consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 AAGTGGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAATGTAGAGAAAAATTAGA 300 consensus_9750#2 ------------------------------------------------------------ consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 TATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAATCGACTACACCAAAAGA 360 consensus_9750#2 ------------------------------------------------------------ consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 ATTACGTGATGAATTATTCAAAGGTACATCTGGTTATACAGAAGATAGATTAATTGAAGA 420 consensus_9750#2 ------------------------------------------------------------ consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 TTTACGTAAAATTTATCAATTAGCTGAATTAGATCCACCATCATCATCAGAAATTTTTTT 480 consensus_9750#2 ------------------------------------------------------------ consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 GGAAACAAGACGTGAAAGCATAAAATTAGGATCACCTACAACAAATAGTTCATCTAATCA 540 consensus_9750#2 ------------------------------------------------------------ consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 ATTATTTAAACGTTTATCCATTGATATAAATAAAAAAGAATCAATTAATGAGAAAAATAT 600 consensus_9750#2 ------------------------------------------------------------ consensus_9750#1 ------------------------------------------------------------ consensus_9750#0 TAGTTCACCTAATCTAAATGATAAAACATCAGAACTAGTTGTAAATGAATCTGATCATGA 660 consensus_9750#2 -----------------------------------------------------AAGGCGA 7 consensus_9750#1 -----------------------------------------------------------A 1 * consensus_9750#0 TATTAAACAAGATCCATCAACGACTATATCACATCATAATTATCATTCAACAGATCATAA 720 consensus_9750#2 C-TCCTAGAGGATCC-CCGACGCAT---TCACATCATAATTATCATTCAACAGATCATAA 62 consensus_9750#1 TCTATTGGAAAAGTT-TTAAATTAC---TTATAT-ATAGTTGACCATGGTGAAGCAACAA 56 * * * * * * ** *** ** * * * * ** consensus_9750#0 -TAATTCTATATTAAATGATATGAAACATGATCTACATCAAGTGGATCAAATCAATAATA 779 consensus_9750#2 -TAATTCTATATTAAATGATATGAAACATGATCTACATCAAGTGGATCAAATCAATAATA 121 consensus_9750#1 CTGATTCTA-ATCTCAAGAAAGCTAAGATTACGTGCATGTTATCG-TCAACCCAAAAACC 114 * ****** ** * ** * ** ** * * *** * * **** *** ** consensus_9750#0 ATAATAGTAAACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAGAGATTG 839 consensus_9750#2 ATAATAGTAGACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAGAGATTG 181 consensus_9750#1 TCCGAAACCTAACCCTCACTGGAAACACCTTGAGCTTCAGAAACCA-GGTGAAGAGTTAC 173 * * * * *** * * * * ** * * ***** * consensus_9750#0 GTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACACATAATAATA 899 consensus_9750#2 GTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACACATAATAATA 241 consensus_9750#1 GTA-TAAGCAACC-TCAAGGCTGGCGCAAAGTTCATTCACGAAT-CCAGATGTAGTCGGG 230 ** ** ** * *** * ** * * * * **** * * * ** * consensus_9750#0 ATAATAATCATGAAATTGATAATTATAATAA-TATAAATAAATTAAAATCGTCTAA-AAT 957 consensus_9750#2 ATAAT---CATGAAATTGATAATTATAATAA-TATAAATAAATTAAAATCGTCTAA-AAT 296 consensus_9750#1 AAAAT----ATTGCTGTGATAATTGAACCAAACAATCATGAATCTGCAGCTTTTATTAAT 286 * *** ** ******** * ** * ** *** * * * ** *** consensus_9750#0 A-ACAATTAGTTATGCTT-------TAACTCATGAATCTAC---AGAAGCTG--ATGCTG 1004 consensus_9750#2 A-ACAATTAGTTATGCTA-------TAACTCATGAATCTAC---AGAAGCTG--ATGCTG 343 consensus_9750#1 ACATATTTCACTATTTTAAGTGGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAA 346 * * * ** *** * ** ** * ** ** * ****** *** consensus_9750#0 T-TGATGAATATCTAAAAAATACTAGTGCAGATGAACGT-------GATCGATTAAGAAA 1056 consensus_9750#2 T-TGATGAATATTTAAAAAATACTAGTGCAGATGAACGT-------GATCGATTAAGAAA 395 consensus_9750#1 TGTAGAGAAAAATTAGATATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAA 406 * * *** * ** * * ***** ** * **** * * *** ** * *** consensus_9750#0 ACATGTA-ATCATTACACATGCTTATTCAAAAATTGATGATCATAT-TG----------- 1103 consensus_9750#2 ACATGTA-ATCATTACACATGCTTATTCAAAAATTGATGATCATAT-TGATCAGATATAA 453 consensus_9750#1 TCGACTACACCAAAAGAATTACGTGATGAATTATTCAAAGGTACATCTGGTTATACAGAA 466 * ** * ** * * * * * * ** *** * * ** ** consensus_9750#0 ------------------------------------------------------------ consensus_9750#2 AAAAAAAAAATGGATAAT------------------------------------------ 471 consensus_9750#1 GATAGATTAATTGAAGATTTACGTAAAATTTATCAATTAGCTGAATTAGATCCACCATCA 526 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||