These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 997 fasta sequence [TTTTACTCTTGTGATTTGTTGCATGGTGTCTAAAGTGTCAATCAATGAACAGTATGGCCACCGAAATAAATTACAGCAACCCGTTTGACTGTGTTGAGGTTTCCCGGGCGAGATATAAGCAGCTAAGGGACCGTCAATTAAGGCGACGTCGGGTTATTTTACGACATCTACTGAAGAACAGTTCATTTTCATTAAGGTTAGAAAACAACAACCAACTCAGCCTAACTCTGTCAGATTTACTTGGTTACCGCAAACCTTCCTACCTACAGTTTGACGAGAACGTTTGTAGGAAGCGGGCGATTCTACCAATTATTTCCCGTTTAAAATGCCCAGTGCTTAGTCTTAAGCTGCGTCGTGCAATACAGTCTTTCCTAGGCGAATCTGGCACATTAAATCAAGATAATAAACAAATCATACAACAGTGGGATAAATTCAGTCTTGAAGTCGTTGGGGATAAATTAAGACAAACACTGGCATCTTGTATATCAACAAATACAGACAGTAATGTAGGAGATAAAGCTTCAAATGACGACAGCGTTGGTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTTTTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATACTGGTGAACGACCACAAAACTTTATACGTGATACTGGTCTGAGAAATCGATTTGAAGAATATCCTAAATTACGTGAATTAATTCGATTAAAAGATCAGTACATTCAGTCAAAGGCTACACCTCCTATGTATTTGTGTGCTGACTTACGAACATTTGATTTAAATGAGTTAGACTCAAAATTCGATGTTATCCTGATTGAACCTCCTTTGGAAGAGTATCATCGAATGAATGGTGCTGTATTTGATCAATATTGGAGTTGGGATGAGATTGAACGTTTAGAAATTGAACAAATCGCTGCTCCACGTGCATTTGTTTGGATATGGTGTGGGTCAGCGCA] [+] EMBL AI974987 [TTTTACTCTTGTGATTTGTTGCATGGTGTCTAAAGTGTCAATCAATGAACAGTATGGCCACCGAAATAAATTACAGCAACCCGTTTGACTGTGTTGAGGTTTCCCGGGCGAGATATAAGCAGCTAAGGGACCGTCAATTAAGGCGACGTCGGGTTATTTTACGACATCTACTGAAGAACAGTTCATTTTCATTAAGGTTAGAAAACAACAACCAACTCAGCCTAACTCTGTCAGATTTACTTGGTTACCGCAAACCTTCCTACCTACAGTTTGACGAGAACGTTTGTAGGAAGCGGGCGATTCTACCAATTATTTCCCGTTTAAAATGCCCAGTGCTTAGTCTTAAGCTGCGTCGTGCAATACAGTCTTTCCTAGGCGAATCTGGCACATTAAATCAAGATAATAAACAAATCATACAACAGTGGGATAAATTCAGTCTTGAAGTCGTTGGGGATAAATTAAGACAAACACTGGCATCTTGTATATCAACAAATACAGACAGTAATGTANGAGATAAAGCTTCAAATGACGACAGCGTTGGTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTTTTCTTAA ] [+] EMBL AI068330 [ GAAGCGGGCGATTCTACCAATTATTTCCCGTTTAAAATGCCCAGTGCTTAGTCTTAAGCTGCGTCGTGCAATACAGTCTTTCCTAGGCGAATCTGGCACATTAAATCAAGATAATAAACAAATCATACAACAGTGGGATAAATTCAGTCTTGAAGTCGTTGGGGATAAATTAAGACAAACACTGGCATCTTGTATATCAACAAATACAGACAGTAATGTAGGAGATAAAGCTTCAAATGACGACAGCGTTGGTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTTTTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATACTGGTGAACGACCACAAAACTTTATACGTGATACTGGTCTGAGAAATCGATTTGAAGAATATCCTAAATTACGTGAATTA ] [+] EMBL AI068157 [ GAAGCGGGCGATTCTACCAATTATTTCCCGTTTAAAATGCCCAGTGCTTAGTCTTAAGCTGCGTCGTGCAATACAGTCTTTCCTAGGCGAATCTGGCACATTAAATCAAGATAATAAACAAATCATACAACAGTGGGATAAATTCAGTCTTGAAGTCGTTGGGGATAAATTAAGACAAACACTGGCATCTTGTATATCAACAAATACAGACAGTAATGTAGGAGATAAAGCTTCAAATGACGACAGCGTTGGTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTTTTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATACTGGTGAACGACCACAAAACTTTA ] [+] EMBL AI067010 [ GAAGCGGGCGATTCTACCAATTATTTCCCGTTTAAAATGCCCAGTGCTTAGTCTTAAGCTGCGTCGTGCAATACAGTCTTTCCTAGGCGAATCTGGCACATTAAATCAAGATAATAAACAAATCATACAACAGTGGGATAAATTCAGTCTTGAAGTCGTTGGGGATAAATTAAGACAAACACTGGCATCTTGTATATCAACAAATACAGA ] [-] EMBL CD086556 [ TGGTTGTCAGAACATTTACTGGATCAGCTGTTTTTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATACTGGTGAACGACCACAAAACTTTATACGTGATACTGGTCTGAGAAATCGATTTGAAGAATATCCTAAATCACGTGAATTAATTCGATTAAAAGATCAGTACATTCAGTCAAAGGCTACACCTCCTATGTATTTGTGTGCTGACTTACGAACATTTGATTTAAATGAGTTAGACTCAAAATTCGATGTTATCCTGATTGAACCTCCTTTGGAAGAGTATCATCGAATGAATGGTGCTGTATTTGATCAATATTGGAGTTGGGATGAGATTGAACGTTTAGAAATTGAACAAATCGCTGCTCCACGTGCATTTGTTTGGATATGGTGTGGGTCAGCGCA] consensusID : consensus_9758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [CTGCACTGACTCAACAAATCCAGACAGTAATGTAGGAGATAAAGCTTCAAATGACGACAGCGTTGGTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTTTTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATACTGGTGAACGACCACAAAACTTTATACGTGATACTGGTCTGAGAAATCGATTTGAAGAATATCCTAAATCACGTGAATTAATTCGATTAAAAGATCAGTACATTCAGTCAAAGGCTACACCTCCTATGTATTTGTGTGCTGACTTACGAACATTTGATTTAAATGAGTTAGACTCAAAATTCGATGTTATCCTGATTGAACCTCCTTTGGAAGAGTATCATCGAATGAATGGTGCTGTATTTGATCAATATTGGAGTTGGGATGAGATTGAACGTTTAGAAATTGAACAAATCGCTGCTCCACGTGCATTTGTTTGCATATGGTGTGGGTCAGTGCA] [-] EMBL CD086543 [CTGCACTGACTCAACAAATCCAGACAGTAATGTAGGAGATAAAGCTTCAAATGACGACAGCGTTGGTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTTTTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATACTGGTGAACGACCACAAAACTTTATACGTGATACTGGTCTGAGAAATCGATTTGAAGAATATCCTAAATCACGTGAATTAATTCGATTAAAAGATCAGTACATTCAGTCAAAGGCTACACCTCCTATGTATTTGTGTGCTGACTTACGAACATTTGATTTAAATGAGTTAGACTCAAAATTCGATGTTATCCTGATTGAACCTCCTTTGGAAGAGTATCATCGAATGAATGGTGCTGTATTTGATCAATATTGGAGTTGGGATGAGATTGAACGTTTAGAAATTGAACAAATCGCTGCTCCACGTGCATTTGTTTGCATATGGTGTGGGTCAGTGCA] consensusID : consensus_9758#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 375 fasta sequence [CCTCAACACAGTCAAACGGGTTGCTGTAATTTATTTCGGTGGCCATACTGTTCATTGATTGACACTTTAGACACATAGATCCCTTTCAGCACATATATGCCGAAGGATATAGTAACAAAAACTGAAACGAACAAGGAAAATATTTTATTTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTAGGAGCATTGACGACTTCACGTATGATCAGAAAACCAGTAACCGCAGAGGCGAACATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTTACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAGAAAACGTAGGCCCGAACATCGTTATGTAACGTTAAG] [+] EMBL CD149754 [CCTCAACACAGTCAAACGGGTTGCTGTAATTTATTTCGGTGGCCATACTGTTCATTGATTGACACTTTAGACACATAGATCCCTTTCAGCACATATATGCCGAAGGATATAGTAACAAAAACTGAAACGAACAAGGAAAATATTTTATTTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTAGGAGCATTGACGACTTCACGTATGATCAGAAAACCAGTAACCGCAGAGGCGAACATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTTACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAGAAAACGTAGGCCCGAACATCGTTATGTAACGTTAAG] [-] EMBL SMAA25603 [ AGGAAAATA TTTAATTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTAGGAGCATTGACGACTTCACGTATGATCAGAAAACCAGTAACCGCAGAGGCGAACATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTTACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAGAAGACGTAGGCCC ] [-] EMBL SMAA28861 [ ATATTTTATTTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTAGGAGCATTGACGACTTCACGTATGATCAGAAAACCAGTAACCGCAGAGGCGAACATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTTACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAGAAAACGTA ] consensusID : consensus_9758#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence [CCTCAACACAGTCGGACGGGTTGCTGTAATTTATTTCGGTGGCCATACTGTTCATTGATTGACACTTTAAACACCTAAGGACAAAGTTTATGAAGGGATACATTTAGAAATACATAGATCCCTTTCAGCACATATATGCCGAAGGATATAGTAACAAAAACTGAAACGAACAAGGAAAATATTTTATTTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTACGAGCATTGACGACTTCACGTATGATCAGAAAACCAGT] [+] EMBL CD149760 [CCTCAACACAGTCGGACGGGTTGCTGTAATTTATTTCGGTGGCCATACTGTTCATTGATTGACACTTTAAACACCTAAGGACAAAGTTTATGAAGGGATACATTTAGAAATACATAGATCCCTTTCAGCACATATATGCCGAAGGATATAGTAACAAAAACTGAAACGAACAAGGAAAATATTTTATTTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTACGAGCATTGACGACTTCACGTATGATCAGAAAACCAGT] consensusID : consensus_9758#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence [TTTTTTTTTTTTTTTTTTAACAAGGAAAATATTTTATTTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTAGGAGCATTGACGACTTCACGTATGATCAGAAAACCAGTAACCGCAGAGGCGAACATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTTACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAGAAAACGTAGGCCCGAACA] [+] EMBL AI395089 [TTTTTTTTTTTTTTTTTTAACAAGGAAAATATTTTATTTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTAGGAGCATTGACGACTTCACGTATGATCAGAAAACCAGTAACCGCAGAGGCGAACATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTTACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAGAAAACGTAGGCCCGAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9758#2 ------------------------------------------------------------ consensus_9758#4 ------------------------------------------------------------ consensus_9758#3 ------------------------------------------------------------ consensus_9758#0 TTTTACTCTTGTGATTTGTTGCATGGTGTCTAAAGTGTCAATCAATGAACAGTATGGCCA 60 consensus_9758#1 ------------------------------------------------------------ consensus_9758#2 ------------------------------------------------------------ consensus_9758#4 ------------------------------------------------------------ consensus_9758#3 ------------------------------------------------------------ consensus_9758#0 CCGAAATAAATTACAGCAACCCGTTTGACTGTGTTGAGGTTTCCCGGGCGAGATATAAGC 120 consensus_9758#1 ------------------------------------------------------------ consensus_9758#2 ------------------------------------------------------------ consensus_9758#4 ------------------------------------------------------------ consensus_9758#3 ------------------------------------------------------------ consensus_9758#0 AGCTAAGGGACCGTCAATTAAGGCGACGTCGGGTTATTTTACGACATCTACTGAAGAACA 180 consensus_9758#1 ------------------------------------------------------------ consensus_9758#2 ------------------------------------------------------------ consensus_9758#4 ------------------------------------------------------------ consensus_9758#3 ------------------------------------------------------------ consensus_9758#0 GTTCATTTTCATTAAGGTTAGAAAACAACAACCAACTCAGCCTAACTCTGTCAGATTTAC 240 consensus_9758#1 ------------------------------------------------------------ consensus_9758#2 ------------------------------------------------------------ consensus_9758#4 ------------------------------------------------------------ consensus_9758#3 ------------------------------------------------------------ consensus_9758#0 TTGGTTACCGCAAACCTTCCTACCTACAGTTTGACGAGAACGTTTGTAGGAAGCGGGCGA 300 consensus_9758#1 ------------------------------------------------------------ consensus_9758#2 ------------------------------------------------------------ consensus_9758#4 ------------------------------------------------------------ consensus_9758#3 ------------------------------------------------------------ consensus_9758#0 TTCTACCAATTATTTCCCGTTTAAAATGCCCAGTGCTTAGTCTTAAGCTGCGTCGTGCAA 360 consensus_9758#1 ------------------------------------------------------------ consensus_9758#2 --------------------------------------------------CCTCAACACA 10 consensus_9758#4 ------------------------------------------------------------ consensus_9758#3 ------------------------------------------------------------ consensus_9758#0 TACAGTCTTTCCTAGGCGAATCTGGCACATTAAATCAAGATAATAAACAAATCATACAAC 420 consensus_9758#1 ------------------------------------------------------------ consensus_9758#2 GTCAAACGGGTTGCTGTAATTTATTTCGGTGGCCATACTGTTCATTGATTGACACTTTAG 70 consensus_9758#4 ------------------------------------------------------------ consensus_9758#3 ------------------------------------------------------------ consensus_9758#0 AGTGGGATAAATTCAGTCTTGAAGTCGTTGGGGATAAATTAAGACAAACACTGGCATCTT 480 consensus_9758#1 -------------------------------------------------------CTGCA 5 consensus_9758#2 ACACATAGATCCCTTTCAGCACATATATGCCGAAGGATATAGTAACAAAAACTGAAACGA 130 consensus_9758#4 -----------------------------------------TTTTTTTTTTTTTTTTTTA 19 consensus_9758#3 -------------------------------------------------CCTCAACACAG 11 consensus_9758#0 GTATATCAACAAATACAGACAGTAATGTAGGAGATAAAGCTTCAAATGACGACAGCGTTG 540 consensus_9758#1 CTGACTCAACAAATCCAGACAGTAATGTAGGAGATAAAGCTTCAAATGACGACAGCGTTG 65 consensus_9758#2 ACAAG-GAAAATATTTTATTTT---TTTTGATAACAAAATTTTTGTCTACAGAGTTTGGG 186 consensus_9758#4 ACAAG-GAAAATATTTTATTTT---TTTTGATAACAAAATTTTTGTCTACAGAGTTTGGG 75 consensus_9758#3 TCGGA-CGGGTTGCTGTAATTTA--TTTCGGTGGCCATAC---TGTTCATTGATTGACAC 65 consensus_9758#0 GTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTT 600 consensus_9758#1 GTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTT 125 * ** ** *** * * * * * * consensus_9758#2 T------AGGAGCAT-TGACGACTTCACGTATGATCAGAAA-ACCAGTAACC-----GCA 233 consensus_9758#4 T------AGGAGCAT-TGACGACTTCACGTATGATCAGAAA-ACCAGTAACC-----GCA 122 consensus_9758#3 T------TTAAACACCTAAGGACAAAGTTTATGAAGGGATACATTTAGAAAT-----ACA 114 consensus_9758#0 TTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATA 660 consensus_9758#1 TTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATA 185 * * * * ** * * * consensus_9758#2 GAGGCGAAC-ATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTT 292 consensus_9758#4 GAGGCGAAC-ATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTT 181 consensus_9758#3 TAGATCCCT-TTCAGCACATATATGCCGAAGGATA--TAGTAACAAAAACTGAAACGAAC 171 consensus_9758#0 CTGGTGAACGACCACAAAACTTTATACGTGATACTGGTCTGAGAAATCGATTTGAAGAAT 720 consensus_9758#1 CTGGTGAACGACCACAAAACTTTATACGTGATACTGGTCTGAGAAATCGATTTGAAGAAT 245 * * * * ** * * * * * consensus_9758#2 ACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAG--AAAACGTAGGC 350 consensus_9758#4 ACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAG--AAAACGTAGGC 239 consensus_9758#3 AAGGAAAATATTTTATTTTT-TTTGATAACAAAATTTTTGTCTACAG--A--GTTTGGGT 226 consensus_9758#0 ATCCTAAATTACGTGAATTAATTCGATTAAAAGATCAGTACATTCAGTCAAAGGCTACAC 780 consensus_9758#1 ATCCTAAATCACGTGAATTAATTCGATTAAAAGATCAGTACATTCAGTCAAAGGCTACAC 305 * *** ** * * * * *** * * consensus_9758#2 CC---GAACATCGTTATGTAACGTTAAG-------------------------------- 375 consensus_9758#4 CC---GAACA-------------------------------------------------- 246 consensus_9758#3 AC---GAGCATTGACGACTTCACGTATGATCAGAAAACCAGT------------------ 265 consensus_9758#0 CTCCTATGTATTTGTGTGCTGACTTACGAACATTTGATTTAAATGAGTTAGACTCAAAAT 840 consensus_9758#1 CTCCTATGTATTTGTGTGCTGACTTACGAACATTTGATTTAAATGAGTTAGACTCAAAAT 365 * consensus_9758#2 ------------------------------------------------------------ consensus_9758#4 ------------------------------------------------------------ consensus_9758#3 ------------------------------------------------------------ consensus_9758#0 TCGATGTTATCCTGATTGAACCTCCTTTGGAAGAGTATCATCGAATGAATGGTGCTGTAT 900 consensus_9758#1 TCGATGTTATCCTGATTGAACCTCCTTTGGAAGAGTATCATCGAATGAATGGTGCTGTAT 425 consensus_9758#2 ------------------------------------------------------------ consensus_9758#4 ------------------------------------------------------------ consensus_9758#3 ------------------------------------------------------------ consensus_9758#0 TTGATCAATATTGGAGTTGGGATGAGATTGAACGTTTAGAAATTGAACAAATCGCTGCTC 960 consensus_9758#1 TTGATCAATATTGGAGTTGGGATGAGATTGAACGTTTAGAAATTGAACAAATCGCTGCTC 485 consensus_9758#2 ------------------------------------- consensus_9758#4 ------------------------------------- consensus_9758#3 ------------------------------------- consensus_9758#0 CACGTGCATTTGTTTGGATATGGTGTGGGTCAGCGCA 997 consensus_9758#1 CACGTGCATTTGTTTGCATATGGTGTGGGTCAGTGCA 522 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||