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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 980 fasta sequence
[CCAANAATTTTGCACGAGGGGACAGGAGCAACAGGAAATGATGAAGGGTTTTTGTCGTACTTCAAAGCCACCATATATATTTTATCGCCCGAAAATTCACAATGAAGAGTCAAAGTGGCGTATAGAAGTGGCGGTTCGCGCTATAGATGCTCTCATCGCTCGGCGTCGGAAAAAGCTCGAAACAGAATTTGAGGAAAATTTACAAGCACGGCGTCGTATCGCTTCAAGTAATAATGATCCATCTGATAATAAGGTAAACAAAACTGAGGATTCTGACAAGAAGAATCATGATTGGGATGAACATGGGAAATCCGATAAACAATGGTCTTCATTAGGTGATATTTCCAGCGAAGCTAAGTTTAACAGTTCTAGGACTTCTACAAATCAGCATCATGGTCCCAGTTATAATTCACCGCGTTTATCGAATACTTTTATTAGCAAAAACTCCCATAACTCTCATCGTCAAGAATTAGAAGCTGGTGAACTATCAGATGGCAGTGAGACATTCGCTTTAGGAGATGAACCTCAATTAATGGAGGAAGACCAGCATCATGCTATATATACAGAATCTCCAAATCGTGCAAAAAAACAAAACACATCTCCTTTATCATCATCTAAACGATCCAGTAGTCATCTGTCATCACACAGTAGNCCCAGTACGTTGTCAACCTCCGACTCAAAAAACGT-AGTTGTCCTCTGGTTGGTGAATCTCATCCACCTGANTATATGATTAAAGAAAAAG-AAAATCTAGACAGAACTCCACTGGGACTGACTNATTTNTCAGTGTTCTC-AGTACTCTAAA-TNTCCAGCGAANNTATT-CCTGGTNTTA-TTCTCTCA-CACTCA-CATC-ATAC-CATGATC--TGGCATAGC--TTTTAG-AAG-AAAGAAA-TATGTCACATCTGCTTCTGAAGGGATCANGATNATNGNTGATGTCCGATAATGCTTAACTATAACATACTATTATTTGGAGCGTTCCAACGTGAGTA]
[+] EMBL CD080812 [CCAANAATTTTGCACGAGGGGACAGGAGCAACAGGAAATGATGAAGGGTTTTTGTCGTACTTCAAAGCCACCATATATATTTTATCGCCCGAAAATTCACAATGAAGAGTCAAAGTGGCGTATAGAAGTGGCGGTTCGCGCTATAGATGCTCTCATCGCTCGGCGTCGGAAAAAGCTCGAAACAGAATTTGAGGAAAATTTACAAGCACGGCGTCGTATCGCTTCAAGTAATAATGATCCATCTGATAATAAGGTAAACAAAACTGAGGATTCTGACAAGAAGAATCATGATTGGGATGAACATGGGAAATCCGATAAACAATGGTCTTCATTAGGTGATATTTCCAGCGAAGCTAAGTTTAACAGTTCTAGGACTTCTACAAATCAGCATCATGGTCCCAGTTATAATTCACCGCGTTTATCGAATACTTTTATTAGCAAAAACTCCCATAACTCTCATCGTCAAGAATTAGAAGCTGGTGAACTATCAGATGGCAGTGAGACATTCGCTTTAGGAGATGAACCTCAATTAATGGAGGAAGACCAGCATCATGCTATATATACAGAATCTCCAAATCGTGCAAAAAAACAAAACACATCTCCTTTATCATCATCTAAACGATCCAGTAGTCATCTGTCATCACACAGTAGNCCCAGTACGTTGTCAACCTCCGACTCAAAAAACGT AGTTGTCCTCTGGTTGGTGAATCTCATCCACCTGANTATATGATTAAAGAAAAAG AAAATCTAGACAGAACTCCACTGGGACTGACTNATTTNTCAGTGTTCTC AGTACTCTAAA TNTCCAGCGAANNTATT CCTGGTNTTA TTCTCTCA CACTCA CATC ATAC CATGATC TGGCATAGC TTTTAG AAG AAAGAAA TATGTCACATCTGCTTCTGAAGGGATCANGATNATNGNTGATGTCCGATAATGCTTAACTATAACATACTATTATTTGGAGCGTTCCAACGTGAGTA]
[+] EMBL CD077340 [ agatatGGA AGGAGCAACAGGAAAAGATGAAGGGTTTTTGTCGTACTTCAAAGCCACCATATATATTTTATCGCCCGAAAATTCACAATGAAGAGTC AAGTGGCGTATAGAAGTGGCGGTTCGCGCTATAGATGCTCTCATCGCTCGGCGTCGGAAAAAGCTCGAAACAGAATTTGAGGAAAATTTACAAGCACGGCGTCGTATCGCTTCAAGTAATAATGATCCATCTGATAATAAGGTAAACAAAACTGAGGATTCTGACAAGAAGAATCATGATTGGGATGAACATGGGAAATCCGATAAACAATGGTCTTCATTAGGTGATATTTCCAGCGAAGCTAAGTTTAACAGTTCTAGGACTTCTACAAATCAGCATCATGGTCCCAGTTATAATTCACCGCGTTTATCGAATACTTTTATTAGCAAAAACTCCCATAACTCTCATCGTCAAGAA ]
[+] EMBL CD078864 [ TGAACATGGGAAATCCGATAAACAATGGTCTTCATTAGGTGATATTTCCAGCGAAGCTAAGTTTAACAGTTCTAGGACTTCTACAAATCAGCATCATGGTCCCAGTTATAATTCACCGCGTTTATCGAATACTTTTATTAGCAAAAACTCCCATAACTCTCATCGTCAAGAATTAGAAGCTGGTGAACTATCAGATGGCAGTGAGACATTCGCTTTAGGAGATGAACCTCAATTAATGGAGGAAGACCAGCATCATGCTATATATACAGAATCTCCAAATCGTGCAAAAAAACAAAACACATCTCCTTTATCATCATCTAAACGATCCAGTAGTCATCTGTCATCACACAGTAG CCCAGTACGTTGTCAACCTCCGACTC AAAAACGTAAGTTGTCCTCT GTTGGTGAATCTCATCCACCTGATAATATGATTAAAGAAAAAGAAAAATCTAGACAGAACTCCACTGGAACTGACTAATTT TCAGTGTTCTCAAGTACTCTAAATTTTCCAGCGAAATTATTCCCTGTTTTTATTTCTCTCACCACTCATCATCAATACACATGATCATTGTCATAGCTTTTTTAGAAAGAAAAGAAATTATGTtccaaca ]
consensusID : consensus_9801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 537 fasta sequence
[AGGAGATGAACCTCAATTAATGGAGGAAGACCAGCATCATGCTATATATACAGAATCTCCAAATCGTGCAAAAAAACAAAACACATCTCCTTTATCATCATCTAAACGATCCCGCAGGCATCTGTCATCACACAGTAGCCCAGTACGTTGTCAACCTCCGACTCAAAAACGTAAGTTGTCCTCTGTTGGTGAATCTCATCCACCTGATAATATGATTAAAGAAAAAGAAAAATCTAGACAGAACTCCACTGGAACTGACTAATTTTCAGTGTTCTCAAGTACTCTAAATTTTCCAGCGAACTTATTCCCTGTTTTTATTTCTCTCACCACTCATCATCAATACACATGATCATTGTCATAGCTTTTTTAGAAAAGAAAAGAAATTATGTTCCAACATCTTGCTTTCCTGATAAGGAATACAGTGTATTTATTGTATGTATGTACGTATTAATGTCTCTTCACACTAGTAAACATTTTACTATTTTATTTTTTGGAAGCCTGTATTTCGCAAACACGTTGAAGTAATATAGAGTAATG]
[-] EMBL CD073324 [AGGAGATGAACCTCAATTAATGGAGGAAGACCAGCATCATGCTATATATACAGAATCTCCAAATCGTGCAAAAAAACAAAACACATCTCCTTTATCATCATCTAAACGATCCAGTAGTCATCTGTCATCACACAGTAGCCCAGTACGTTGTCAACCTCCGACTCAAAAACGTAAGTTGTCCTCTGTTGGTGAATCTCATCCACCTGATAATATGATTAAAGAAAAAGAAAAATCTAGACAGAACTCCACTGGAACTGACTAATTTTCAGTGTTCTCAAGTACTCTAAATTTTCCAGCGAAATTATTCCCTGTTTTTATTTCTCTCACCACTCATCATCAATACACATGATCATTGTCATAGCTTTTTTAGAAAAGAAAAGAAATTATGTTCCAACATCTTGCTTTCCTGATAAGGAATACAGTGTATTTATTGTATGTATGTACGTATTAATGTCTCTTCACACTAGTAAACATTTTACTATTTTATTTTTTGGAAGCCTGTATTTCGCAAACACGTTGAAGTAATATAGAGTAATG]
[+] EMBL CD060752 [ CGCAGGCATCTGTCATCACACAGTAGCCCAGTACGTTGTCAACCTCCGACTCAAAAACGTAAGTTGTCCTCTGTTGGTGAATCTCATCCACCTGATAATATGATTAAAGAAAAAGAAAAATCTAGACAGAACTCCACTGGAACTGACTAATTTTCAGTGTTCTCAAGTACTCTAAATTTTCCTGCGAACCTATgggt ]
[+] EMBL CD060739 [ CGCAGGCATCTGTCATCACACAGTAGCCCAGTACGTTGTCAACCTCCGACTCAAAAACGTAAGTTGTCCTCTGTTGGTGAATCTCATCCACCTGATAATATGATTAAAGAAAAAGAAAAATCTAGACAGAACTCCACTGGAACTGACTAATTTTCAGTGTTCTCAAGTACTCTAAATTTTCCt ]
[-] EMBL CD060970 [ CACACAGTAGCCCAGTACGTTGTCAACCTCCGACTCAAAAACGTAAGTTGTCCTCTGTTGGTGAATCTCATCCACCTGATAATATGATTAAAGAAAAAGAAAAATATAGACAGATCTCCACTGGAACTGACTAATTTTCAGTGTTCTCAAGTACTGTAAATTCTCCAGCGAACgtgg ]
[-] EMBL CD061015 [ CACACAGTAGCCCAGTACGTTGTCAACCTCCGACTCAAAAACGTAAGTTGTCCTCTGTTGGTGAATCTCATCCACCTGATAATATGATTAAAGAAAAAGAAAAATATAGACAGAACTCCACTGGAACTGACTAATTTTCAGTG TCTCAAGTACTCT AATTTT CATCGAACT ]
consensusID : consensus_9801#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence
[CGCTATAGATGCTCTCATCGCTCGGNGTTCGGAAAAAGCTCGAAACAGAATTTGNGGAAAATTTACAAGCACGGNGTCGTATCGCTTCAAGTAATAATGATCCATCTGATAATAAGGTAAACAAAACTGAGGATTCTGACANGAAGAATCATGATTGGNATGAACATGGGAAATCCGATAAACAATGGTCTTCATTAGGTGATATTTCCAGNGANGCTAAGTTTAACAGCTCTAGGACTNCTACANCCTCAGNCANCATNNNGNNCNNANTNNNANTCCACCGNGT]
[+] EMBL SMRAP103 [CGCTATAGATGCTCTCATCGCTCGGNGTTCGGAAAAAGCTCGAAACAGAATTTGNGGAAAATTTACAAGCACGGNGTCGTATCGCTTCAAGTAATAATGATCCATCTGATAATAAGGTAAACAAAACTGAGGATTCTGACANGAAGAATCATGATTGGNATGAACATGGGAAATCCGATAAACAATGGTCTTCATTAGGTGATATTTCCAGNGANGCTAAGTTTAACAGCTCTAGGACTNCTACANCCTCAGNCANCATNNNGNNCNNANTNNNANTCCACCGNGT]
consensusID : consensus_9801#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 215 fasta sequence
[TTTTTGTCGAACTTCAAAGCCACTATATATATTTTATCGCCCGAAAATTCACAATGAAGAGTCAAAGTGGCGTATAGAAGTGGCGGTTCGCGCTATAGATGGTTGGTTTTTTACATTTGTTTATTAAAAACACTGTACACTATTGTTGTTTATTAACTACATAAATACTTAATTCTAAATTCATCGTCATAAGATCTACGTTCAGTACACCTACG]
[+] EMBL CD087934 [TTTTTGTCGAACTTCAAAGCCACTATATATATTTTATCGCCCGAAAATTCACAATGAAGAGTCAAAGTGGCGTATAGAAGTGGCGGTTCGCGCTATAGATGGTTGGTTTTTTACATTTGTTTATTAAAAACACTGTACACTATTGTTGTTTATTAACTACATAAATACTTAATTCTAAATTCATCGTCATAAGATCTACGTTCAGTACACCTACG]
[+] EMBL CD087920 [TTTTTGTCGTACTTCAAAGCCACCATATATATTTTATCGCCCGAAAATTCACAATGAAGAGTCAAAGTGGCGTATAGAAGTGGCGGTTCGCGCTATAGATGGTTGGTTTTTTACATTTATTTATTAAAAACACTGTACACTATTGTTGTNTATTAACTACATAAATACTTAATTCTAAATTCATCGTCTTAAGATCTACGTTCAGTACACCTACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9801#0 CCAANAATTTTGCACGAGGGGACAGGAGCAACAGGAAATGATGAAGGGTTTTTGTCGTAC 60
consensus_9801#2 ------------------------------------------------------------
consensus_9801#1 -----------------------------------------AGGAGATGAACCTCAATTA 19
consensus_9801#3 ------------------------------------------------------------
consensus_9801#0 TTCAAAGCCACCATATATATTTTATCGCCCGAAAATTCACAATGAAGAGTCAAAGTGGCG 120
consensus_9801#2 ------------------------------------------------------------
consensus_9801#1 ATGGAGGAAGACCAGCATCATGCTATATATACAGAATCTCCAAATCGTGCAAAAAAACAA 79
consensus_9801#3 ------------------------------------------------------------
consensus_9801#0 TATAGAAGTGGCGGTTCGCGCTATAGATGCTCTCAT---CGCTCGGCGT-CGGAAAAAGC 176
consensus_9801#2 ------------------CGCTATAGATGCTCTCAT---CGCTCGGNGTTCGGAAAAAGC 39
consensus_9801#1 AACACATCTCCTTTATCATCATCTAAACGATCCCGCAGGCATCTGTCATCACACAGTAGC 139
consensus_9801#3 ------------------------------------------------------------
consensus_9801#0 TCGAAACAGAATTTGAGGAAAATTTACAAGCACGGCGTCGTATCGCTTCAAGTAATAATG 236
consensus_9801#2 TCGAAACAGAATTTGNGGAAAATTTACAAGCACGGNGTCGTATCGCTTCAAGTAATAATG 99
consensus_9801#1 CCAGTACGTTGTCAACCTCCGACTCAAAAACGTA-AGTTGT-CCTCTGTTGGTGAATCTC 197
consensus_9801#3 ----------------------------------TTTTTGTCGAACTTCAAAGCCACTAT 26
* ** **
consensus_9801#0 ATCCATCTGATAATAAGGTAAACAAAACTGAGGATTCT-GACAAGAAGAATCATGATTGG 295
consensus_9801#2 ATCCATCTGATAATAAGGTAAACAAAACTGAGGATTCT-GACANGAAGAATCATGATTGG 158
consensus_9801#1 ATCCACCTGATAATATGATTAAAGAAAAAGAAAAATCTAGACAGAACTCCACTGGAACTG 257
consensus_9801#3 ATATATTTTATCGCCCGAAAATTCACAATGAAGAGTCAAAGTGGCGTATAGAAGTGGCGG 86
** * * ** * * * * ** * ** *
consensus_9801#0 GATGAACATGGGAAATCCGATAAACAATGG-TCTTCATTAGGTGATATTTCCAGCGAAGC 354
consensus_9801#2 NATGAACATGGGAAATCCGATAAACAATGG-TCTTCATTAGGTGATATTTCCAGNGANGC 217
consensus_9801#1 ACTAATTTTCAGTGTTCTCAAGTACTCTAAATTTTCCAGCGAACTTATTCCCTGTTTTTA 317
consensus_9801#3 TTCGCGCTATAGATGGTTGGTTTTTTACAT-TTGTTTATTAAAAACACTGTACACTATTG 145
* * * * *
consensus_9801#0 TAAGTTTAACAGTTC--TAGGACTTC-TACAA-----ATCAGCATCAT--GGTCCCAGTT 404
consensus_9801#2 TAAGTTTAACAGCTC--TAGGACTNC-TACANCCTCAGNCANCATNNN--GNNCNNANTN 272
consensus_9801#1 TTTCTCTCACCACTCATCATCAATACACATGATCATTGTCATAGCTTT--TTTAGAAAAG 375
consensus_9801#3 TT-GTTTATTAACTA--CATAAATACTTAATTCTAAATTCATCGTCATAAGATCTACGTT 202
* * * * * * * * * **
consensus_9801#0 ATAATTCACCGCGTTTATCGAATACTTTTATTAGCAAAAACTCCCATAACTCTCATCGTC 464
consensus_9801#2 NNANTCCACCGNGT---------------------------------------------- 286
consensus_9801#1 AAAAGAAATTATGTTCCAACATCTTGCTTTCCTGATAAGGAATACAGTGTATTTATTGTA 435
consensus_9801#3 CAGTACACCTACG----------------------------------------------- 215
*
consensus_9801#0 AAGAATTAGAAGCTGGTGAACTATCAGATGGCAGTGAGACATTCGCTTTAGGAGATGAAC 524
consensus_9801#2 ------------------------------------------------------------
consensus_9801#1 TGTATGTACGTATTAATGTCTCTTCACACTAGTAAACATTTTACTATTTTATTTTTTGGA 495
consensus_9801#3 ------------------------------------------------------------
consensus_9801#0 CTCAATTAATGGAGGAAGACCAGCATCATGCTATATATACAGAATCTCCAAATCGTGCAA 584
consensus_9801#2 ------------------------------------------------------------
consensus_9801#1 AGCCTGTATTTCGCAAACACGTTGAAGTAATATAGAGTAATG------------------ 537
consensus_9801#3 ------------------------------------------------------------
consensus_9801#0 AAAAACAAAACACATCTCCTTTATCATCATCTAAACGATCCAGTAGTCATCTGTCATCAC 644
consensus_9801#2 ------------------------------------------------------------
consensus_9801#1 ------------------------------------------------------------
consensus_9801#3 ------------------------------------------------------------
consensus_9801#0 ACAGTAGNCCCAGTACGTTGTCAACCTCCGACTCAAAAAACGTAGTTGTCCTCTGGTTGG 704
consensus_9801#2 ------------------------------------------------------------
consensus_9801#1 ------------------------------------------------------------
consensus_9801#3 ------------------------------------------------------------
consensus_9801#0 TGAATCTCATCCACCTGANTATATGATTAAAGAAAAAGAAAATCTAGACAGAACTCCACT 764
consensus_9801#2 ------------------------------------------------------------
consensus_9801#1 ------------------------------------------------------------
consensus_9801#3 ------------------------------------------------------------
consensus_9801#0 GGGACTGACTNATTTNTCAGTGTTCTCAGTACTCTAAATNTCCAGCGAANNTATTCCTGG 824
consensus_9801#2 ------------------------------------------------------------
consensus_9801#1 ------------------------------------------------------------
consensus_9801#3 ------------------------------------------------------------
consensus_9801#0 TNTTATTCTCTCACACTCACATCATACCATGATCTGGCATAGCTTTTAGAAGAAAGAAAT 884
consensus_9801#2 ------------------------------------------------------------
consensus_9801#1 ------------------------------------------------------------
consensus_9801#3 ------------------------------------------------------------
consensus_9801#0 ATGTCACATCTGCTTCTGAAGGGATCANGATNATNGNTGATGTCCGATAATGCTTAACTA 944
consensus_9801#2 ------------------------------------------------------------
consensus_9801#1 ------------------------------------------------------------
consensus_9801#3 ------------------------------------------------------------
consensus_9801#0 TAACATACTATTATTTGGAGCGTTCCAACGTGAGTA 980
consensus_9801#2 ------------------------------------
consensus_9801#1 ------------------------------------
consensus_9801#3 ------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||