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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 648 fasta sequence
[TTAAATTAAACTTTACGTGATGTCAAA-AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTCAAGGACCAGTAGCTAGTGTTTATCCAACTGGTTCGCCATATGCAACACCAATTATTCCTTACTTAACAAGTTC]
[+] EMBL AI067404 [TTAGATTAAACTTTACGTGATGTCAAAGGAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAGCACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAANAGTGGATCGTATATTTAAGAGATCAACGAGAAAACCGGTGCATATGTGCANATTTCACACAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGG ]
[+] EMBL AI067759 [TTAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAAC ]
[+] EMBL AI067801 [TTAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAA CGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTC ]
[+] EMBL AI067236 [TTAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGA ]
[+] EMBL AI067938 [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTCAAGGACCAGTAGCTAGTGTTTATCCAACTGGTTCGCCATATGCAACACCAATTATTCCTTACTTAACAAGTTC]
[+] EMBL AI067273 [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTCAAGGACCAGTAGCTAGTGTTTATCCAACTGGTTCGCCATATGCAACACCAAT ]
[+] EMBL AI067251 [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATTCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTCAAG ]
[+] EMBL AI068024 [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCT ]
[+] EMBL AI067715 [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATACGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAA CGGTGCATATGTGCACATTTCACACAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGGTGT ]
[+] EMBL AI067425 [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTAC ]
consensusID : consensus_9817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[GCTTCAAGTCCGACGTTACAGCTCCTTAAATTAAACTTTACGTGATGTCAAAAAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGTTTCAGAATCCTTAATTCTACATCCGTACATCCCAACTCATGGTTAGACTCAAGGCTTTCAGGTCTCACATCAAACTATTATTTCAAACTAATGGATATGAATCCGCTGATTCAGAGTATAGACATCAACCACCAAC]
[+] EMBL CD077343 [GCTTCAAGTCCGACGTTACAGCTCCTTAAATTAAACTTTACGTGATGTCAAAAAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGTTTCAGAATCCTTAATTCTACATCCGTACATCCCAACTCATGGTTAGACTCAAGGCTTTCAGGTCTCACATCAAACTATTATTTCAAACTAATGGATATGAATCCGCTGATTCAGAGTATAGACATCAACCACCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9817#0 -------------------------TTAAATTAAACTTTACGTGATGTCAAAAAACTAAA 35
consensus_9817#1 GCTTCAAGTCCGACGTTACAGCTCCTTAAATTAAACTTTACGTGATGTCAAAAAACTAAA 60
***********************************
consensus_9817#0 CATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAG 95
consensus_9817#1 CATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAG 120
************************************************************
consensus_9817#0 CTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATAC 155
consensus_9817#1 CTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATAC 180
************************************************************
consensus_9817#0 AAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAAT 215
consensus_9817#1 AAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAAT 240
************************************************************
consensus_9817#0 TGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATAC 275
consensus_9817#1 TGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATAC 300
************************************************************
consensus_9817#0 TAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTAC 335
consensus_9817#1 TAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGTTTCAGAATC-----C 355
******************************************** * * * ** *
consensus_9817#0 CGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAG 395
consensus_9817#1 TTAATTCTACATCCG-TACA-TCCCAACTCATGGTTAGACTCAAGGCTTTCAGGTCTCAC 413
*** **** * * ** * * * *** * * * ** ** *
consensus_9817#0 AGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAAC 455
consensus_9817#1 ATCAAACTATTATTTCAAACTAA--TGGATATGAATC-CGCTGATTCAGAGTATAGACAT 470
* **** * * ** * * * **** ** ***** * * *
consensus_9817#0 GATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAA 515
consensus_9817#1 CAACCACCAAC------------------------------------------------- 481
* **
consensus_9817#0 ATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTC 575
consensus_9817#1 ------------------------------------------------------------
consensus_9817#0 AAGGACCAGTAGCTAGTGTTTATCCAACTGGTTCGCCATATGCAACACCAATTATTCCTT 635
consensus_9817#1 ------------------------------------------------------------
consensus_9817#0 ACTTAACAAGTTC 648
consensus_9817#1 -------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||