These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9843#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1040 fasta sequence [AGACATAGTTTTATCCTATGAAATTTACCCTTGCTGTCCGGCATAGAGCTCACATACTAAAGATGTGTTTTTTACTTACGGTTTATATGTCTAATTGTTTGTCGATTGCTCATTTATGTTAGCTTTGTTTTGTATTAATGTAGGTACAAGTAAACACAAAGGAAACATACAATCTTACCCATGTATCTTAGTTTATTCGCGTTTAATCTTCTACTGGGATTGTCAGTTGGTTATCCTAGTCGGTTGACTTTCGAGTTACCTGACAATGAAGGTATTTGCTTCTATGAAGATCTTCCAGCTTCGAAAAAGTACGTATTTAGCTATCACGTAATTCACGGAGGTCAAACTGATGTGGATATCGTGATTAAAGATCCTAAACAAGTGATTATTTCTAATGTCGAACGTGGTTCAGACGACGATATCACCTTCACAACAATTCCTTCTAATGGCACTTATTCTTTTTGTTTCAGTAATGAGTTCTCTTCTATATCGCACAAACTTATATATTTTGAAATTCGACCGGAAGATTTTGAATCGTTAGCTGAAGAGGCTGGGTTACCGGTTTTTCCAACTGTGATGACTTTACTGGATAGTGTTGTGGAGGTGTTACATCATTATTTGTCACGGGCTGAAAGTTTCGGAATCGAGTTGAAAAATCGTGATTATGGTGATTTCTTAGTAGCGGAAGATTTGAATTCAGCTGTTTTTGTTTGGAGTGTCATTATTACATTTGTTGTGATAATAACTTCAGTTGGACAAGTCACAATATTAAAGAATTTCTTCAGTGAGAAAAAAGTTGCTTATTCGGCAATCCCAACAAGTTATCCTACCCATACTTTGAGAACATGATTTGGTGCAAATTCTAGCATTATTTCTGCTTTATAGGATAGTTGGGATTAGACGATGACAAGCACGAGAAATATCGACTATTTTCTGACTCCCGTCCAACTTTATTTTTTTTGTCAGTCGATTCTTACTCATTTTCTAACCAAACTTTCCAAATTGTTAACCTGTACAGCTTCGGTTTTTAAAATTTTGAT] [-] EMBL CD066047 [AGACATAGTTTTATCCTATGAAATTTACCCTTGCTGTCCGGCATAGAGCTCACATACTAAAGATGTGTTTTTTACTTACGGTTTATATGTCTAATTGTTTGTCGATTGCTCATTTATGTTAGCTTTGTTTTGTATTAATGTAGGTACAAGTAAACACAAAGGAAACATACAATCTTACCCATGTATCTTAGTTTATTCGCGTTTAATCTTCTACTGGGATTGTCAGTTGGTTATCCTAGTCGGTTGACTTTCGAGTTACCTGACAATGAAGGTATTTGCTTCTATGAAGATCTTCCAGCTTCGAAAAAGTACGTATTTAGCTATCACGTAATTCACGGAGGTCAAACTGATGTGGATATCGTGATTAAAGATCCTAAACAAGTGATTATTTCTAATGTCGAACGTGGTTCAGACGACGATATCACCTTCACAACAATTCCTTCTAATGGCACTTATTCTTTTTGTTTCAGTAATGAGTTCTCTTCTATATCGCACAAACTTATATATTTTGAAATTCGACCGGAAGATTTTGAATCGTTAGCTGAAGAGGCTGGGTTACCGGTTTTTCCAACTGTGATGACTTTACTGGATAGTGTTGTGGAGGTGTTATATCATTATTTGTCACGGGCTGAAAGTTTCGGAATCGAGTTGAAAAAT ] [-] EMBL CD066037 [ TATATGTCTAATTGTTTGTCGATTGCTCATTTATGTTAGCTTTGTTTTGTATTAATGTAGGTACAAGTAAACACAAAGGAAACATACAATCTTACCCATGTATCTTAGTTTATTCGCGTTTAATCTTCTACTGGGATTGTCAGTTGGTTATCCTTGTCGGTTGACTTTCGAGTTACCTGACAATGAAGGTATTTGCTTCTATGAAGATCTTCCAGCTTCGAAAAAGTACGTATTTAGCTATCACGTAATTCACGGAGGTCAAACTGATGTGGATATCGTGATTAAAGATCCTAAACAAGTGATTATTTCTAATGTCGAACGTGGTTCAGACGACGATATCACCTTCACAACAATTCCTTCTAATGGCACTTATTCTTTTTGTTTCAGTAATGAGTTCTCTTCTATATCGCACAAACTTATATATTTTGAAATTCGACCGGAAGATTTTGAATCGTTAGCTGAAGAGGCTGGGTTACCGGTTTTTCCAACTGTGATGACTTTACTGGATAGTGTTGTGGAGGTGTTACATCATTATTTGTCACGGGCTGAAAGTTTCGGAATCGAGTTGAAAAAT ] [+] EMBL CD155765 [ ACACAAAGGAAACATACAATCTTACCCATGTATCTTAGTTTATTCGCGTTTAATCTTCTACTGGGATTGTCAGTTGGTTATCCTAGTCGGTTGACTTTCGAGTTACCTGACAATGAAGGTATTTGCTTCTATGAAGATCTTCCAGCTTCGAAAAAGTACGTATTTAGCTATCACGTAATTCACGGAGGTCAAACTGATGTGGATATCGTGATTAAAGATCCTAAACAAGTGATTATTTCTAATGTCGAACGTGGTTCAGACGACGATATCACCTTC ] [+] EMBL CD118378 [ ACACAAAGGAAACATACAATCTTACCCATGTATCTTAGTTTATTCGCGTTTAATCTTCTACTGGGATTGTCAGTTGGTTATCCTAGTCGGTTGACTTTCGAGTTACCTGACAATGAAGGTATTTGCTTCTATGAAGATCTTCCAGCTTCGAAAAAGTACGTATTTAGCTATCACGTAATTCACGGAGGTCAAACTGATGTGGATATCGTGATTAAAGATCCTAAACAAGTGATTATTTCTAATGTCGAACGTGGTTCAGACGACGATATCACCTTC ] [-] EMBL CD155792 [ CACAAAGGAAACATACAATCTTACCCATGTATCTTAGTTTATTCGCGTTTAATCTTCTACTGGGATTGTCAGTTGGTTATCCTAGTCGGTTGACTTTCGAGTTACCTGACAATGAAGGTATTTGCTTCTATGAAGATCTTCCAGCTTCGAAAAAGTACGTATTTAGCTATCACGTAATTCACGGAGGTCAAACTGATGTGGATATCGTGATTAAAGATCCTAAACAAGTGATTATTTCTAATGTCGAACGTGGTTCAGACGACGATATCACCTTCACAACAATTCCTTCTAATGGCACTTATTCTTTTTGTTTCAGTA ] [+] EMBL CD138322 [ CAAACTGATGTGGATATCGTGATTAAAGATCCTAAACAAGTGATTATTTCTAATGTCGAACGTGGTTCAGACGACGATATCACCTTCACAACAATTCCTTCTAATGGCACTTATTCTTTTTGTTTCAGTAATGAGTTCTCTTCTATATCGCACAAACTTATATATTTTGAAATTCGACCGGAAGATTTTGAATCGTTAGCTGAAGAGGCTGGGTTACCGGTTTTTCCAACTGTGATGACTTTATTGGATAGTGTTGTGGAGGTGTTACATCATTATTTGTCACGGGCTGAAAGTTTCGGAATC ] [-] EMBL CD074765 [ ACCTTCACAACAATTCCTTCTAATGGCACTTATTCTTTTTGTTTCAGTAATGAGTTCTCTTCTATATCGCACAAACTTATATATTTTGAAATTCGACCGGAAGATTTTGAATCGTTAGCTGAAGAGGCTGGGTTACCGGTTTTTCCAACTGTGATGACTTTACTGGATAGTGTTGTGGAGGTGTTACATCATTATTTGTCACGGGCTGAAAGTTTCGGAATCGAGTTGAAAAATCGTGATTATGGTGATTTCTTAGTAGCGGAAGATTTGAATTCAGCTGTTTTTGTTTGGAGTGTCATTATTACATTTGTTGTGATAATAACTTCAGTTGGACAAGTCACAATATTAAAGAATTTCTTCAGTGAGAAAAAAGTTGCTTATTCGGCAATCCCAACAAGTTATCCTACCCATACTTTGAGAACATGATTTGGTGCAAATTCTAGCATTATTTCTGCTTTATAGGATAGTTGGGATTAGACGATGACAAGCACGAGAAATATCGACTATTTTCTGACTCCCGTCCAACTTTATTTTTTTTGTCAGTCGATTCTTACTCATTTTCTAACCAAACTTTCCAAATTGTTAACCTGTACAGCTTCGGTTTTTAAAATT ] [-] EMBL CD076616 [ GTTAGCTGAAGAGGCTGGGTTACCGGTTTTTCCAACTGTGATGACTTTATTGGATAGTGTTGTGGAGGTGTTACATCATTATTTGTCACGGGCTGAAAGTTTCGGAATCGAGTTGAAAAATCGTGATTATGGTGATTTCTTAGTAGCGGAAGATTTGAATTCAGCTGTTTTTGTTTGGAGTGTCATTATTACATTTGTTGTGATAATAACTTCAGTTGGACAAGTCCCAATATTAAAGAATTTTTTCAGTGAGAAAAAAGTTGCTTATTCGGCAATCCCAACAAGTTATCCTACCCATACTTTGAGAACATGATTTGGTGCAAATTTTAGCATTATTTTTGCTTTATAGGATAGTTGGGATTAGACGATGACAAGCCCGAGAAATATCGACTATTTTTTGACTCCCGTCCAACTTTATTTTTTTTGTCAGTCGATTTTTACTCATTTTTTAACCAAACTTTCCAAATTGTTAACCTGTACAGCTTCGGTTTTTAAAATTTTGAT] [+] EMBL CD083037 [ TTAGCTGAAGAGGCTGGGTTACCGGTTTTTCC ACTGTGATGACTTTATTGGATAGTGTTGTGGAGGTGTTACATCATTATTTGTCACGGGCTGAAAGTTTCGGAATCGAGTTGAAAAATCGTGATTATGGTGATTTCTTAGTAGCGGAAGATTTGAATTCAGCTGTTTTTGTTTGGAGTGTCATTATTACATTTGTTGTGATAATAACTTCAGTTGGACAAGTCACAATATTAAAGAATTTCTTCAGTGAGAAAAAAGTTGCTTATTCGGCAATCCCAACAAGTTATCCTACCCATACTTTGAGAACATGATTTGGTGCAAATTCTAGCATTATTTCTGCTTTATAGGATAGTTGGGATTAGACGATGACAAGCACGAGAAATATCGACTATTTTCTGACTCCCGTCCAACTTTATTTTTTTTGTCAGTCGATTCTTACTCATTTTCTAACCAAACTTTCCAAATTGTTAACCTGTACAGCTTCGGTTTTTAAAATTTTGA ] consensusID : consensus_9843#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 737 fasta sequence [GATTGTCAGTTGGTTATCCTAGTCGGTTGACTTTCGAGTTACCTGACAATGAAGGTATTTGCTTCTATGAAGATCTTCCAGCTTCGAAAAAGTACGTATTTAGCTATCACGTAATTCACGGAGGTCAAACTGATGTGGATATCGTGATTAAAGANNNNNNACAAGTGATTATTTCTAATGTCGAACGTGGTTCAGACGACGATATCACCTTCACAACAATTCCTTCTAATGGCACTTATTCTTTTTGTTTCAGTAATGAGTTCTCTTCTATATCGCACAAACTTATATATTTTGAAATTCGACCGGANNNNNNNNNNNNNNNNAGCTGAAGAGGCTGGGTTACCGGTTTTTCCAACTGTGATGACTTTACTGGATAGTGTTGTGGAGGTGTTACATCATTATTTGTCACGGGCTGAAAGTTTCGGAATCGAGTTGAAAAATCGTGATTATGGTGATTTCTTAGTAGCGAGTGTCATTATTACATTTGTTGTGATAATAACTTCAGTTGGACAAGTCACAATATTAAAGAATTTCTTCAGTGAGAAAAAAGTTGCTTATTCGGCAATCCCAACAAGTTATCCTACCCATACTTTGAGAACATGATTTGGTGCANATTCTAGCATTATTTCTGCTNTATAGGATATTTTCTGACTCCCGTCCACTTTATTTTTTTTGTCAGTCGATTCTACTCATTTCTACCAAACTTTCCAATTTGTACCTGTCAGCTTCGTTTTTAA] [+] EMBL CD080931 [GATTGTCAGTTGGTTATCCTAGTCGGTTGACTTTCGAGTTACCTGACAATGAAGGTATTTGCTTCTATGAAGATCTTCCAGCTTCGAAAAAGTACGTATTTAGCTATCACGTAATTCACGGAGGTCAAACTGATGTGGATATCGTGATTAAAGANNNNNNACAAGTGATTATTTCTAATGTCGAACGTGGTTCAGACGACGATATCACCTTCACAACAATTCCTTCTAATGGCACTTATTCTTTTTGTTTCAGTAATGAGTTCTCTTCTATATCGCACAAACTTATATATTTTGAAATTCGACCGGANNNNNNNNNNNNNNNNAGCTGAAGAGGCTGGGTTACCGGTTTTTCCAACTGTGATGACTTTACTGGATAGTGTTGTGGAGGTGTTACATCATTATTTGTCACGGGCTGAAAGTTTCGGAATCGAGTTGAAAAATCGTGATTATGGTGATTTCTTAGTAGCGAGTGTCATTATTACATTTGTTGTGATAATAACTTCAGTTGGACAAGTCACAATATTAAAGAATTTCTTCAGTGAGAAAAAAGTTGCTTATTCGGCAATCCCAACAAGTTATCCTACCCATACTTTGAGAACATGATTTGGTGCANATTCTAGCATTATTTCTGCTNTATAGGATATTTTCTGACTCCCGTCCACTTTATTTTTTTTGTCAGTCGATTCTACTCATTTCTACCAAACTTTCCAATTTGTACCTGTCAGCTTCGTTTTTAA] consensusID : consensus_9843#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [CCATAATCACGATTTTTCAACTCGATTCCGAAACTTTCAGCCCGTGACAAATAATGATGTAACACCTTCACAACAATTCCTTCTAATGGCACTTATTCTTTTTGTTTCAGTAATGAGTTCTCTTCTATATCGCACAAACTTATATATTTTGAAATTCGACCGGAAGACTTTGAATCGTTAGCTGAAGAGGCTGGGTTACCGGTTTTTCCAACTGTGATGACTTTATTG] [-] EMBL CD135069 [CCATAATCACGATTTTTCAACTCGATTCCGAAACTTTCAGCCCGTGACAAATAATGATGTAACACCTTCACAACAATTCCTTCTAATGGCACTTATTCTTTTTGTTTCAGTAATGAGTTCTCTTCTATATCGCACAAACTTATATATTTTGAAATTCGACCGGAAGACTTTGAATCGTTAGCTGAAGAGGCTGGGTTACCGGTTTTTCCAACTGTGATGACTTTATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9843#0 AGACATAGTTTTATCCTATGAAATTTACCCTTGCTGTCCGGCATAGAGCTCACATACTAA 60 consensus_9843#1 ------------------------------------------------------------ consensus_9843#2 ------------------------------------------------------------ consensus_9843#0 AGATGTGTTTTTTACTTACGGTTTATATGTCTAATTGTTTGTCGATTGCTCATTTATGTT 120 consensus_9843#1 ------------------------------------------------------------ consensus_9843#2 ------------------------------------------------------------ consensus_9843#0 AGCTTTGTTTTGTATTAATGTAGGTACAAGTAAACACAAAGGAAACATACAATCTTACCC 180 consensus_9843#1 ------------------------------------------------------------ consensus_9843#2 ------------------------------------------------------------ consensus_9843#0 ATGTATCTTAGTTTATTCGCGTTTAATCTTCTACTGGGATTGTCAGTTGGTTATCCTAGT 240 consensus_9843#1 -------------------------------------GATTGTCAGTTGGTTATCCTAGT 23 consensus_9843#2 ------------------------------------------------------------ consensus_9843#0 CGGTTGACTTTCGAGTTACCTGACAATGAAGGTATTTGCTTCTATGAAGATCTTCCAGCT 300 consensus_9843#1 CGGTTGACTTTCGAGTTACCTGACAATGAAGGTATTTGCTTCTATGAAGATCTTCCAGCT 83 consensus_9843#2 ------------------------------------------------------------ consensus_9843#0 TCGAAAAAGTACGTATTTAGCTATCACGTAATTCACGGAGGTCAAACTGATGTGGATATC 360 consensus_9843#1 TCGAAAAAGTACGTATTTAGCTATCACGTAATTCACGGAGGTCAAACTGATGTGGATATC 143 consensus_9843#2 ----------------------------------------------------------CC 2 * consensus_9843#0 GTGATTAAAGATCCTAAACAAGTGATTATTTCTAATGTCGAACGTGGTTCAGACGACGAT 420 consensus_9843#1 GTGATTAAAGANNNNNNACAAGTGATTATTTCTAATGTCGAACGTGGTTCAGACGACGAT 203 consensus_9843#2 ATAATCACGATTTTTCAAC--TCGATT--CCGAAACTTTCAGCCCGTGACAAATAATGAT 58 * ** * ** **** ** * * * * ** * * *** consensus_9843#0 AT--CACCTTCACAACAATTCCTTCTAATGGCACTTATTCTTTTTGTTTCAGTAATGAGT 478 consensus_9843#1 AT--CACCTTCACAACAATTCCTTCTAATGGCACTTATTCTTTTTGTTTCAGTAATGAGT 261 consensus_9843#2 GTAACACCTTCACAACAATTCCTTCTAATGGCACTTATTCTTTTTGTTTCAGTAATGAGT 118 * ******************************************************** consensus_9843#0 TCTCTTCTATATCGCACAAACTTATATATTTTGAAATTCGACCGGAAGATTTTGAATCGT 538 consensus_9843#1 TCTCTTCTATATCGCACAAACTTATATATTTTGAAATTCGACCGGANNNNNNNNNNNNNN 321 consensus_9843#2 TCTCTTCTATATCGCACAAACTTATATATTTTGAAATTCGACCGGAAGACTTTGAATCGT 178 ********************************************** consensus_9843#0 TA-GCTGAAGAGGCTGGGTTACCGGTTTTTCCAACTGTGATGACTTTACTGGATAGTGTT 597 consensus_9843#1 NNAGCTGAAGAGGCTGGGTTACCGGTTTTTCCAACTGTGATGACTTTACTGGATAGTGTT 381 consensus_9843#2 TA-GCTGAAGAGGCTGGGTTACCGGTTTTTCCAACTGTGATGACTTTATTG--------- 228 ********************************************* ** consensus_9843#0 GTGGAGGTGTTACATCATTATTTGTCACGGGCTGAAAGTTTCGGAATCGAGTTGAAAAAT 657 consensus_9843#1 GTGGAGGTGTTACATCATTATTTGTCACGGGCTGAAAGTTTCGGAATCGAGTTGAAAAAT 441 consensus_9843#2 ------------------------------------------------------------ consensus_9843#0 CGTGATTATGGTGATTTCTTAGTAGCGGAAGATTTGAATTCAGCTGTTTTTGTTTGGAGT 717 consensus_9843#1 CGTGATTATGGTGATTTCTTAGTAGCG------------------------------AGT 471 consensus_9843#2 ------------------------------------------------------------ consensus_9843#0 GTCATTATTACATTTGTTGTGATAATAACTTCAGTTGGACAAGTCACAATATTAAAGAAT 777 consensus_9843#1 GTCATTATTACATTTGTTGTGATAATAACTTCAGTTGGACAAGTCACAATATTAAAGAAT 531 consensus_9843#2 ------------------------------------------------------------ consensus_9843#0 TTCTTCAGTGAGAAAAAAGTTGCTTATTCGGCAATCCCAACAAGTTATCCTACCCATACT 837 consensus_9843#1 TTCTTCAGTGAGAAAAAAGTTGCTTATTCGGCAATCCCAACAAGTTATCCTACCCATACT 591 consensus_9843#2 ------------------------------------------------------------ consensus_9843#0 TTGAGAACATGATTTGGTGCAAATTCTAGCATTATTTCTGCTTTATAGGATAGTTGGGAT 897 consensus_9843#1 TTGAGAACATGATTTGGTGCANATTCTAGCATTATTTCTGCTNTATAGGATA-------- 643 consensus_9843#2 ------------------------------------------------------------ consensus_9843#0 TAGACGATGACAAGCACGAGAAATATCGACTATTTTCTGACTCCCGTCCAACTTTATTTT 957 consensus_9843#1 --------------------------------TTTTCTGACTCCCGTCCA-CTTTATTTT 670 consensus_9843#2 ------------------------------------------------------------ consensus_9843#0 TTTTGTCAGTCGATTCTTACTCATTTTCTAACCAAACTTTCCAAATTGTTAACCTGTACA 1017 consensus_9843#1 TTTTGTCAGTCGATTCT-ACTCATTTCT--ACCAAACTTTCCAATTTGT--ACCTGT-CA 724 consensus_9843#2 ------------------------------------------------------------ consensus_9843#0 GCTTCGGTTTTTAAAATTTTGAT 1040 consensus_9843#1 GCTTCG-TTTTTAA--------- 737 consensus_9843#2 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||