cluster # 9879

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Schistosoma mansoni
cluster # 9879 cluster # 9879 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9879#0 length = 445 sequences # 10

consensus_9879#1 length = 349 sequences # 1
consensus_9879#2 length = 273 sequences # 1

consensusID : consensus_9879#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 445
fasta sequence

                              [GGATTCATATACAGGATGACCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCACCC-CTTATTCGATATAGAAGAGTAGGGGGTACGTGATATGAGCTTGGCGTATATGGACGTTCCGTCGACTCGCTTCTATGCAGTGTAGGCAAAATTCGAACATCAGCTGATGTTAGAGTACCAGGAACACGGCCAACTTCGATCCAAGGTGCATTTGGTCTGCTAGCCTCAGTAGCCTCGATTACGTATGCGGATGGCATAGACAATGATTCATCTAATTTGTAGGAACTCTTTTGAGGATGTTGCCATTCTAAGTGAAGACCAGAATCAAAAGGAAGATATTCTGATCTGAGAAGGTGGAGCTGGTTTCTCTTTCTTTTCTTTATCTAATTGTGGCATGAAAACAGGTTGTGGAAGAATAACTGGTTCACT]

[+] EMBL CD195591             [GGATTCATATACAGGATGACCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCACCC CTTATTCGATATAGAAGAGTAGGGGGTACGTGATATGAGCTTGGCGTATATGGACGTTCCGTCGACTCGCTTCTATGCAGTGTAGGCAAAAT                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD195581             [GGATTCATATACAGGATGACCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCACCC CTTATTCGATATAGAAGAGTAGGGGGTACGTGATATGAGCTTGGCGTATATGGACGTTCCGTCGACTCGCTTCTATGCAGTGTAGGCAAAAT                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD195508             [GGATTCATATACAGGATGACCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCACCCNCTTATTCGATATAGAAGAGTAGGGGGTACGTGATATGAGCTTGGCGTATATGGACGTTCCGTCGACTCGCTTCTATGCAGTGTAGGCAAAAT                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD195541             [ GATTCATATACAGGATGACCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCACCC CTTATTCGATATAGAAGAGTAGGGGGTACGTGATACGAGCTTGGCGTATATGGACGTTCCGTCGACTCGCTTCTATGCAGTGTAGGCAAAATT                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD195463             [ GATTCATATACAGGATGACCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCACCC CTTATTCGATATAGAAGAGTAGGGGGTACGTGATATGAGCTTGGCGTATATGGACGTTCCGTCGACTCGCTTCTATGCAGTGTAGGCAAAATT                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD195491             [ GATTCATATACAGGATGACCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCACCC CTTATTCGATATAGAAGAGTAGGGGGTACGTGATATGAGCTTGGCGTATATGGACGTTCCGTCGACTCGCTTCTATGCAGTGTAGGCAAAATT                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD195536             [ GATTCATATACAGGATGACCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCACCC CTTATTCGATATAGAAGAGTAGGGGGTACGTGATATGAGCTTGGCGTATATGGACGTTCCGTCGACTCGCTTCTATGCAGTGTAGGCAAAATT                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD195470             [ GATTCATATACAGGATGACCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCGCCC CTTATTCGATATAGAAGAGTAGGGGGTACGTGATATGAGCTTGGCGTATATGGACGTTCCGTCGACTCGCTTCTATGCAGTGTAGGCAAAATT                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD186597             [          ACAGGATGACCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCACCC CTTATTCGATATAGAAGAGTAGGGGGTACGTGATATGAGCTTGGCGTATATGGACGTTCCGTCGACTCGCTTCTATGCAGTGTAGGCAAAATTCGAACATCAGCTGATGTTAGAGTACCAGGAACACGGCCAACTTCGATCCAAGGTGCATTTGGTCTGCTAGCCTCAGTAGCCTCGATTACGTATGCGGATGGCATAGACAATGATTCATCTAATTTGTAGGAACTCTTTTGAGGATGTTGCCATTCTAAGTGAAGACCAGAATCAAAAGGAAGATATTCTGATC                                                                                   ]
[+] EMBL CD196557             [                                                        AACCAAACTCATTTTCACCC CTTATTCGATATAGAAGAGTAGGGGGTACGTGATATGAGCTTGGCGTATATGGACGTTCCGTCGACTCGCTTCTATGCAGTGTAGGCAAAATTCGAACATCAGCTGATGTTAGAGCACCAGGAACACGGCCAACTTCGATCCAAGGTGCATTTGGTCTGCTAGCCTCAGTAGCCTCGATTACGTATGCGGATGGCATAGACAATGATTCATCTAATTTGTAGGAACTCTTTTGAGGATGTTGCCATTCTAAGTGAAGACCAGAATCAAAAGGAAGATATTCTAAGATGAGAAGGTGGAGCTGGTTTCTCTTTCTTTTCTTTATCTAATTGTGGCATGAAAACAGGTTGTGGAAGAATAACTGGTTCACT]




>consensus_9879#0
GGATTCATATACAGGATGACCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACC
AAACTCATTTTCACCCCTTATTCGATATAGAAGAGTAGGGGGTACGTGATATGAGCTTGG
CGTATATGGACGTTCCGTCGACTCGCTTCTATGCAGTGTAGGCAAAATTCGAACATCAGC
TGATGTTAGAGTACCAGGAACACGGCCAACTTCGATCCAAGGTGCATTTGGTCTGCTAGC
CTCAGTAGCCTCGATTACGTATGCGGATGGCATAGACAATGATTCATCTAATTTGTAGGA
ACTCTTTTGAGGATGTTGCCATTCTAAGTGAAGACCAGAATCAAAAGGAAGATATTCTGA
TCTGAGAAGGTGGAGCTGGTTTCTCTTTCTTTTCTTTATCTAATTGTGGCATGAAAACAG
GTTGTGGAAGAATAACTGGTTCACT

consensusID : consensus_9879#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [GATTGGGAAACATTTGTGCTTCTGTATCTCTGGAGCAATGAGGCGGACCAGCGTAATTCAATCTCGAGGTACACTGAAATTCCAGATGACGATAGGCATGCAAACGAGTTTTCAAGGCGAACCGGAGCTTAATTTTAGCGTGCTGCGAAAGCCAGGTTTAGGATTCCATATATCAGGACTGATCCAGGTCGGTATGCAATATGCTTGTACAAAAGAGGGTGCGCATTAAACGCAAACGTCATTTTCACCCACTTATTCGATAGTAGAAGAGTAAGGGGGTACGTGATATGAGCATTGGCGTATATGGACGTTCGCGTCGACTCGCTTCTACTGCAGTGTAGGCAAAATT]

[-] EMBL CD195557             [GATTGGGAAACATTTGTGCTTCTGTATCTCTGGAGCAATGAGGCGGACCAGCGTAATTCAATCTCGAGGTACACTGAAATTCCAGATGACGATAGGCATGCAAACGAGTTTTCAAGGCGAACCGGAGCTTAATTTTAGCGTGCTGCGAAAGCCAGGTTTAGGATTCCATATATCAGGACTGATCCAGGTCGGTATGCAATATGCTTGTACAAAAGAGGGTGCGCATTAAACGCAAACGTCATTTTCACCCACTTATTCGATAGTAGAAGAGTAAGGGGGTACGTGATATGAGCATTGGCGTATATGGACGTTCGCGTCGACTCGCTTCTACTGCAGTGTAGGCAAAATT]




>consensus_9879#1
GATTGGGAAACATTTGTGCTTCTGTATCTCTGGAGCAATGAGGCGGACCAGCGTAATTCA
ATCTCGAGGTACACTGAAATTCCAGATGACGATAGGCATGCAAACGAGTTTTCAAGGCGA
ACCGGAGCTTAATTTTAGCGTGCTGCGAAAGCCAGGTTTAGGATTCCATATATCAGGACT
GATCCAGGTCGGTATGCAATATGCTTGTACAAAAGAGGGTGCGCATTAAACGCAAACGTC
ATTTTCACCCACTTATTCGATAGTAGAAGAGTAAGGGGGTACGTGATATGAGCATTGGCG
TATATGGACGTTCGCGTCGACTCGCTTCTACTGCAGTGTAGGCAAAATT

consensusID : consensus_9879#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [AGGCGACCGGAGCTTAATTTTAGGTGCTCGAAGCCAGGTTTGGATTCATATACAGGATGATCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCACCCCTTATTCGATATACAAGAGTAGGGGGTACGTGATATGAGCTTGGCGTATATGGACGTTCCGTCGACTCGCTTATATGCACGTGTAGACGTATTTTTAGCATCAGCTCATGTGAGAGTACAATGAATACGTCTAGCTCCGATCCCAGGCGCATTTGG]

[-] EMBL CD179759             [AGGCGACCGGAGCTTAATTTTAGGTGCTCGAAGCCAGGTTTGGATTCATATACAGGATGATCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCACCCCTTATTCGATATACAAGAGTAGGGGGTACGTGATATGAGCTTGGCGTATATGGACGTTCCGTCGACTCGCTTATATGCACGTGTAGACGTATTTTTAGCATCAGCTCATGTGAGAGTACAATGAATACGTCTAGCTCCGATCCCAGGCGCATTTGG]




>consensus_9879#2
AGGCGACCGGAGCTTAATTTTAGGTGCTCGAAGCCAGGTTTGGATTCATATACAGGATGA
TCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCACCCCTT
ATTCGATATACAAGAGTAGGGGGTACGTGATATGAGCTTGGCGTATATGGACGTTCCGTC
GACTCGCTTATATGCACGTGTAGACGTATTTTTAGCATCAGCTCATGTGAGAGTACAATG
AATACGTCTAGCTCCGATCCCAGGCGCATTTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9879#0      -----------------------------------------GGATTCATATACAGGATGA 19
consensus_9879#2      AGGCGACCGGAGCTTAATTTTAGGTGCTCGAAGCCAGGTTTGGATTCATATACAGGATGA 60
consensus_9879#1      ------------------------------------------------------------
                                                                                  

consensus_9879#0      CCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCACCCCTT 79
consensus_9879#2      TCAGGTGGTTCAATTCTTGTCACAAGAGGTGCGCTTAAACCAAACTCATTTTCACCCCTT 120
consensus_9879#1      ------------------------------------GATTGGGAAACATTTGTGCTTCTG 24
                                                           *     *  *****   *  ** 

consensus_9879#0      ATTCGATATAGAAGAGTAGGGGGT--ACGTGATATGAGCTTGGCGTATATGGACGTTCCG 137
consensus_9879#2      ATTCGATATACAAGAGTAGGGGGT--ACGTGATATGAGCTTGGCGTATATGGACGTTCCG 178
consensus_9879#1      TATCTCTGGAGCAATGAGGCGGACCAGCGTAATTCAATCTCGAGGTACACTGAAATTCCA 84
                        **  *  *  *  *  * **     *** **   * ** *  *** *  **  **** 

consensus_9879#0      TCGACTCGCTTCTATGCA-GTGTAGGCAAAATTCGAACATCAGCT-GATGTTAGAGTACC 195
consensus_9879#2      TCGACTCGCTTATATGCACGTGTAGACGTATTTTTAGCATCAGCT-CATGTGAGAGTACA 237
consensus_9879#1      GATGACGATAGGCATGCAAACGAGTTTTCAAGGCGAACCGGAGCTTAATTTTAGCGTGCT 144
                                   *****   *       *     * *   ****  ** * ** ** * 

consensus_9879#0      AGGAACACGGCCAACTTCGATCCAAGGTGCATTTGGTCTGCTAGCCTCAGTAGCCTCGAT 255
consensus_9879#2      ATGAATACGTCTAGCTCCGATCCCAGGCGCATTTGG------------------------ 273
consensus_9879#1      GCGAA---AGCCAGGTTTAGGATTCCATATATCAGGACTGAT----CCAG--GTCGGTAT 195
                        ***     * *  *              **  **                        

consensus_9879#0      TACGTATGCGGATGGCATAGACAATGATTCATCTAATTTGTAGGAACTCTTTTGAGGATG 315
consensus_9879#2      ------------------------------------------------------------
consensus_9879#1      GCAATATGC---TTGTACAAAAGAGGGTGCGCATTAAACGCAAACGTCATTTTCAC---- 248
                                                                                  

consensus_9879#0      TTGCCATTCTAAGTGAAGACCAGAATCAAAAGGAAGATATTCTGATC-TGAGAAGGTGGA 374
consensus_9879#2      ------------------------------------------------------------
consensus_9879#1      CCACTTATTCGATAGTAGA--AGAGTAAGGGGGTACGTGATATGAGCATTGGCGTATATG 306
                                                                                  

consensus_9879#0      GCTGGTTTCTCTTTCTTTTCTTTATCTAATTGTGGCATGAAAACAGGTTGTGGAAGAATA 434
consensus_9879#2      ------------------------------------------------------------
consensus_9879#1      GACGTTCGCGTCGACTCGCTTCTACTGCAGTGTAG-GCAAAATT---------------- 349
                                                                                  

consensus_9879#0      ACTGGTTCACT 445
consensus_9879#2      -----------
consensus_9879#1      -----------