|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1743 fasta sequence
[GAGTTTCAATTAGTAGATCCAGATTATTTTCTAAACTAAATGGCTTACATTGATGTGCACAAATTACATCAACTTAAGTAGTTAAAGATGAATCGTTTGAGAAGAACATTCAGCTTTCGGAAACGGAAAAAGCAGAATAAGAATGAGGCTGGTGATTCTTCGAAACCACAACAATGGCTAGATGATGAGGTGAAAATCAAGGAGGGATTCTGTAATTTTCAAGTTAAGTATTTAGGGAATATTGAGGTTTACGAATCAAGAGGAATGCAAGTTTGTGAAGAAGCGATTAAGGCTCTAAGAAAATCAAAGAAACCGCAAAAAGCTGTTTTATCTGTCAGCGGTGACGCTCTACGCGTTTCAGATGACGTTAGTCAGCATCTCATCGTCGATCAGACAATTGAGAAAGTTTCATTTTGTGCTCCTGATAGAAATCATGAGAAGGGATTCGCATATATATGTCGTGATGGAGCTACCCGCCGTTGGATGTGTCACGCCTTTCTCGCCGTCAAGGAATCCGGTGAACGGTTATCTCATGCTGTCGGGTGTGCTTTTGCTATATGTTTGGAGAAGAAACAAAGACGTGAACGAGATGCTCTTCAGTTAGAGGCTTCAGATGATCGTCCAACTTTCGCTCGTGTTGGATCGTTTCGTCCGGCTACTCTCGCCGAACGGCTACTGGATCCTCAGTCTACTATTGTAGTCGACCCAGTGCCAAAATCTAATAATACATCTTCAACATCACCTACCACTATAACTCGGGTATCTTCACCAGTTAACCATATTGGAGCTATTCCACGACCCCATGCTAGTCCATCAATTATTGAGCGACAAGGTTCACTAAGAATATTTCCAAAATTACAAGAGAATAGTCCTTTTAAAAGAGATCT-TTCATTACGTCTGGAAGGAGTTCCTTCGAATGTACGCCGTTTGGCTGGAATAATTCAAAGTGCACCTATAGCGGAGGAACCAGACACAGAATTTGAATCAAAGAAACCAGGAGTATTTGTTAAAAGTGACGAACG-ACCTGAAAAAAGTGAATTAGTTACTGCATGTTCTACATCTAATTGGAGCTCATCTATAGTAGTGGCCAGTTCATCTTCGAACCTCCCAATTATGAATGGTTTAACTGTAGTAACTCAATCGTTTGTACCTAGTAGCCACTTTACAAGCGATTTCAATCTTGATCCTAAAACATCACAGGCATTTATACCTTCAGTTATTTCAGATCCTTTTTCTGCTGCCCCAATCAATCCAGCTACAATACAACGGCACTATCAGATGGAATTGCAACAACAACAGCAACACC-AGCAAATAACAGGTTCTTCACTACTAAGTTCCAAAGCTCCAATGGCTGTTGTTTCAACTATCAGTTCTACACCGACTTCACCATTTTTAGGCGGACCACCAATTGCTGCTCCAACCTTATCGATTAATACTTATAATTCTAGTCCATGGGGCAGTTACATATCCACAGATGCAACAATTTAACAAATCTATTATTCAATATAATTCAAATTTACCCAGTTCTCCTACTGGTACAATGAATTCTC-AACAAATCTAACTTATCCTTCCAATGGTGTTTTAAAATCAGGTTCTACAAATCCATGGTCATCATCAATGGGATTGGTTTATGGGAGAAACGTTAGTAATACAAACTGGCAAGCTTCATCGCCATCGTCATTACCACCTACTCTTCTACCTCCAGAGCCTGATTGTCTTTCGGATCCATTCGATTTAGGTTGG]
[+] EMBL CD161825 [GAGTTTCAATTAGTAGATCCAGATTATTTTCTAAACTAAATGGCTTACATTGATGTGCACAAATTACATCAACTTAAGTAGTTAAAGATGAATCGTTTGAGAAGAACATTCAGCTTTCGGAAACGGAAAAAGCAGAATAAGAATGAGGCTGGTGATTCTTCGAAACCACAACAATGGCTAGATGATGAGGTGAAAATCAAGGAGGGATTCTGTAATTTTCAAGTTAAGTATTTAGGGAATATTGAGGTTTACGAATCAAGAGGAATGCAAGTTTGTGAAGAAGCGATTAAGGCTCTAAGAAAATCAAAGAAACCGCAAAAAGCTGTTTTATCTGTCAGCGGTGACGCTCTACGCGTTTCAGATGAC ]
[-] EMBL CD116622 [ TCTGTAGTTTTCAAGTTAAGTATTTAGGGAATATTGAGGTTTACGAATCAAGAGGAATGCAAGTTTGTGAAGAAGCGATTAAGGCTCTAAGAAAATCAAAGAAACCGCAAAAAGCTGTTTTATCTGTCAGCGGTGACGCTCTACGCGTTTCAGATGACGTTAGTCAGCATCTCATCGTCGATCAGACAATTGAGAAAGTTTCATTTTGTGCTCCTGATAGAAATCATGAGAAGGGATTCGCATATATATGTCGTGATGGAGCTACCCGCCGTTGGATGTGTCACGCCTTTCTCGCCGTCAAGGAATCCGGTGAACGGTTATCTCATGCTGTCGGGTGTGCTTTTGCTATATGTTTGGAGAAGAAACAAAGACGTGAACGAGATGCTCTTCAGTTAGAGGCTTCAGATGATCGTCCAACTTTCGCTCGTGTTGGATCGTTTCGTCCGGCTACTCTCGCCGAACGGCTACTGGATCCTCAGTCTACTATTGTAGTCGACCCAGTGCCAAAATCTAATAATACATCTTCAACATCACCTACCACTATAACTCGGGTATCTTCACCAGTTAACCATATTGGAGCTATTC ]
[-] EMBL CD122919 [ TCCGGCTACTCTCGCCGAACGGCTACTGGATCCTCAGTCTACTATTGTAGTCGACCCAGTGCCAAAATCTAATAATACATCTTCAACATCACCTACCACTATAACTCGGGTATCTTCACCAGTTAACCATATTGGAGCTATTCCACGACCCCATGCTAGTCCATCAATTATTGAGCGACAAGGTTCACTAAGAATATTTCCAAAATTACAAGAGAATAGTCCTTTTAAAAGAGATCT TTCATTACGTCTTGAAGGAGTTCCTTCGAATGTACGCCGTTTGGCTGGAATAATTCAAAGTGCACCTATAGCGGAGGAACCAGACACAGAATTTGAATCAAAGAAACCAGGAGTATTTGTTAAAAGTGACGAACG ACCTGAAAAAAGTGAATTAGTTACTGCATGTTCTACATCTAATTGGGGCTCATCTATAGTAGTGGCCAGTTCATCTTCGAACCTCCCAATTATGAATGGTTTAACTGTAGTAACTCAATCGTTTGTACCTAGTAGCCACTTTACAAGCGATTTCAATCTTG ]
[-] EMBL CD122879 [ TCGGGCTACTCTCGCCGAACGGTTAGTGGATCTTCAGTCTACTATTGTAGTCGACCCAGTGCCAAAATGTAATAATACATGTTCAACATCACTTACCACTATAATTCGGGTATCTTCACCAGTTATCCATATTGGAGCTATTCCACGACGCCATGATAGTCCATCAATTATTGAGTGACAAGGTTCAGTAAGAATATTTCCAAAATTACAAGAGAATAGTCCTTTTAAAAGAGATCTGTTCATTACGTCTGGAAGGAGTTCTTTTGAATG ]
[+] EMBL CD200582 [ GTCCATCAATTATTGAGCGACAAGGTTCACTAAGAATATTTCCAAAATTACAAGAGAATAGTCCTTTTAAAAGAGATCT TTCATTACGTCTTGAAGGAGTTCCTTCGAATGTACGCCGTTTGGCTGGAATAATTCAAAGTGCACCTATAGCGGAGGAACCAGACACAGAATTTGAATCAAAGAAACCAGGAGTATTTGTTAAAAGTGACGAACG ACCTGAAAAAAGTGAATTAGTTACTGCATGTTCTACATCTAATTGGAGCTCATCTATAGTAGTGGCCAGTTCACCTTCGAACCTCCCAATTATGAATGGTTTAACTGTAGTAACTCAATCGTTTGTACCTAGTAGCCACTTTACAAGCGATTTCAATCTTGATCCTAAAACATCACAGGCATTTATACCTTCAGTTATTTCAGATCCTTTTTCTGCTG ]
[-] EMBL CD116180 [ AAAGAGATCT TTCATTACGTCTGAAAGGAGTTCCTTCGAATGTACGCCGTTTGGCTGGAATAATTCAAAGTGCACCTATAGCGGAGGAACCAGACACAGAATTTGAATCAAAGAAACCAGGAGTATTTGTTAAAAGTGACGAACG ACCTGAAAAAAGTGAATTAGTTACTGCATGTTCTACATCTAATTGGAGCTCATCTATAGTAGTGGCCAGTTCATCTTCGAACCTCCCAATTATGAATGGTTTAACTGTAGTAACTCAATCGTTTGTACCTAGTAGCCACTTTACAAGCGATTTCAATCTTGATCCTAAAACATCACAGGCATTTATACCTTCAGTTATTTCAGATCCTTTTTCTGCTGCCCCAATCAATCCAGCTACAATACAACGGCACTATCAGATGGAATTGCAACAACAACAGCAACACC AGCAAATAACAGGTTCTTCACTACTAAGTTCCAAAGCTCCAATGGCTGTTGTTTCAACTATCAGTTCTACACCGACTTCGCCATTTTTAGGCGGACCACCAATTGCTGCTCCAACCTTATCGATTAATACTTATAATTCTAGTCCATG ]
[+] EMBL CD178325 [ TGGAAGGAGTTCCTTCGAATGTACGCCGTTTGGCTGGAATAATTCAAAGTGCACCTATAGCGGAGGAACCAGACACAGAATTTGAATCAAAGAAACCAGGAGTGTTTGTTAAAAGTGACGAACGTACCTGAAAAAAGTGAATTAGTTACTGCATGTTCTACATCTAATTGGAGCTCATCTATAGTAGTGGCCAGTTCATCTTCGAACCTCCCAATTATGAATGGTTTAACTGTAGTAACTCAATCGTTTGTACCTAGTAGCCACTTTACAAGCGATTTCAATCTTGATCCTAAAACATCACAGGCATTTATACCTTCAGTTATTTCAGATCCTTTTTCTGCTGCCCCAATCAATCCAGCTACAATACAACGGCACTATCAGATGGAATTGCAACAACAACAGCAACACC AGCAAATAACAGGTTCTTCACTACTAAGTTCCAAAGCTCCAATGGCTGTTGTTTCAACTATCAGTTCTACACCGACTTCACCATTTTTAGGCGGACCACCAATTGCTGCTCCAACCTTATCGATTAATACTTATAATTCTAGTCCATGGGGCAGTTACATATCCACAGATGCAACAATTTAACAAATCTATTATTCAATATAATTCAAATTTACCCAGTTCTCCTACTGGTCCAATGAATTCTC AACAAA ]
[-] EMBL CD116149 [ AGTTCCTTCGAATGTACGCCGTTTGGCTGGAATAATTCAAAGTGCACCTATAGCGGAGGAACCAGACACAGAATTTGAATCAAAGAAACCAGGAGTATNTGTTAAAAGTGACGAACG ACCTGAAAGAAGTGAATTAGTTACTGCATGTTCTACATCTAATTGGAGCTCATCTATAGTAGTGGCCAGTTCATCTTCGAACCTCCCAATTATGAATGGTTTAACTGTAGTAACTCAATCGTTTGTACCTAGTAGCCACTTTACAAGCGATTTCAATCTTGATCCTAAAACATCACAGGCATTTATACCTTCAGTTATTTCAGATCCTTTTTCTGCTGCCCCAATCAATCCAGCTACAATACAACGGCACTATCAGATGGAATTGCAACAACAACAGCAACACC AGCAAATAACAGGTTCTTCACTACTAAGTTCCAAAGCTCCAATGGCTGTTGTTTCAACTATCAGTTCTACACCGACTTCACCATTTTTAGGCGGACCACCAATTGCTGCTCCAACCTTATCGATTAATACTTATAATCCTAGTCCATG ]
[+] EMBL CD196430 [ CCTTTTTCTGCTGCCCCAATCAATCCAGCTACAATACAACGGCACTATCAGATGGAATTGCAACAACAACAGCAACACC AGCAAATAACAGGTTCTTCACTACTAAGTTCCAAAGCTCCAATGGCTGTTGTTTCAACTATCAGTTCTACACCGACTTCACCATTTTTAGGCGGACCACCAATTGCTGCTCCAACCTTATCGATTAATACTTATAATTCTAGTCCAT GGGCAGTTACATATCCACAGATGCAACAATTTAACAAATCTATTATTCAATATAATTCAAATTTACCCAGTTCTCCTACTGGTACAATGAATTCTCAAACAAATCTAACTTATCCTTCCAATGGTGTTTTAAAATCAGGTTCTACAAATCCATGGTCATCATCCATGGG ]
[+] EMBL CD068207 [ ATCCAGCTACAATACAACGGCACTATCAGATGGAA TGCAACAACAACAGCAACACCGAGCAAATAACAGGTTCTTCACTACTAAGTTCCAAAGCTCCAATGGCTGTAGTTTCAACTATCAGTTCTACACCGACTTCACCATTTTTAGGCGGACCACCAATTGCTGCTCCAACCTTATCGATTAATACTTATAATTCTAGTCCGT GGGCAGTTACATATCCACAGATGCAACAATTTAACAAATCTATTATTCAATATAATTCAAATTTACCCAGTTCTCCTACTGGTACAATGAATTCTCAAACAAATCTAACTTATCCTTCCAATGGTGTTTTAAAATCAGGTTCTACAAATCCATGGTCATCATCAATGGGATTGGTTTATGGGAGAAACGTTAGTAATACAAACTGGCAA ]
[-] EMBL CD138941 [ TCGATTAATACTTATAATTNTAGTCCAT GGGCAGTTACATATCCACAGATGCAACAATTTAACAAATCTATTATTCAATATAATTCAAATTTACCCAGTTCTCCTACTGGTACAATGAATTCTCAAACAAATCTAACTTATCCTTCCAATGGTGTTTTAAAATCAGGTTCTACAAATCCATGGTCATCATCAATGGGATTGGTTTATGGGAGAAACGTTAGTAATACAAACTGGCAAGCTTCATCGCCATCGTCATTACCACCTACTCTTCTACCTCCAGAGCCTGATTGTCTTTCGGATCCATTCGATTTAGGTTGG]
consensusID : consensus_9885#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence
[TTGTGAAGAAGCGATTAAGGCTCTAAGAAAATCAAAGGTTTGTTATATTTTATTTGAATAACATACAATGATATTTCGAAGAAACCGCAAAAAGCTGTTTTATCTGTCAGCGGTGACGCTCTACGCGTTTCAGATGACGTTAGTCAGCATCTCATCGTCGATCAGACAATTGAGAAAGTTTCATTTTGTGCTCCTGATAGAAATCATGAGAAGGGATTCGCATATATATGTCGTGATGGAGCTACCCGCCGTTGG]
[+] EMBL CD141701 [TTGTGAAGAAGCGATTAAGGCTCTAAGAAAATCAAAGGTTTGTTATATTTTATTTGAATAACATACAATGATATTTCGAAGAAACCGCAAAAAGCTGTTTTATCTGTCAGCGGTGACGCTCTACGCGTTTCAGATGACGTTAGTCAGCATCTCATCGTCGATCAGACAATTGAGAAAGTTTCATTTTGTGCTCCTGATAGAAATCATGAGAAGGGATTCGCATATATATGTCGTGATGGAGCTACCCGCCGTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9885#0 GAGTTTCAATTAGTAGATCCAGATTATTTTCTAAACTAAATGGCTTACATTGATGTGCAC 60
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 AAATTACATCAACTTAAGTAGTTAAAGATGAATCGTTTGAGAAGAACATTCAGCTTTCGG 120
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 AAACGGAAAAAGCAGAATAAGAATGAGGCTGGTGATTCTTCGAAACCACAACAATGGCTA 180
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 GATGATGAGGTGAAAATCAAGGAGGGATTCTGTAATTTTCAAGTTAAGTATTTAGGGAAT 240
consensus_9885#1 ---------------------------------------------------TTGTGAAGA 9
** * *
consensus_9885#0 ATTGAGGTTTACGAATCAAGAGGAATGCAAGTTTGTGAAG----AAGCGATTAAGGCTCT 296
consensus_9885#1 A--GCGATTAAGGCTCTAAGAAAATCAAAGGTTTGTTATATTTTATTTGAATAACATACA 67
* * * ** * * **** * * ****** * * ** *** *
consensus_9885#0 AAGAAAAT-CAAAGAAACCGCAAAAAGCTGTTTTATCTGTCAGCGGTGACGCTCTACGCG 355
consensus_9885#1 ATGATATTTCGAAGAAACCGCAAAAAGCTGTTTTATCTGTCAGCGGTGACGCTCTACGCG 127
* ** * * * *************************************************
consensus_9885#0 TTTCAGATGACGTTAGTCAGCATCTCATCGTCGATCAGACAATTGAGAAAGTTTCATTTT 415
consensus_9885#1 TTTCAGATGACGTTAGTCAGCATCTCATCGTCGATCAGACAATTGAGAAAGTTTCATTTT 187
************************************************************
consensus_9885#0 GTGCTCCTGATAGAAATCATGAGAAGGGATTCGCATATATATGTCGTGATGGAGCTACCC 475
consensus_9885#1 GTGCTCCTGATAGAAATCATGAGAAGGGATTCGCATATATATGTCGTGATGGAGCTACCC 247
************************************************************
consensus_9885#0 GCCGTTGGATGTGTCACGCCTTTCTCGCCGTCAAGGAATCCGGTGAACGGTTATCTCATG 535
consensus_9885#1 GCCGTTGG---------------------------------------------------- 255
********
consensus_9885#0 CTGTCGGGTGTGCTTTTGCTATATGTTTGGAGAAGAAACAAAGACGTGAACGAGATGCTC 595
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 TTCAGTTAGAGGCTTCAGATGATCGTCCAACTTTCGCTCGTGTTGGATCGTTTCGTCCGG 655
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 CTACTCTCGCCGAACGGCTACTGGATCCTCAGTCTACTATTGTAGTCGACCCAGTGCCAA 715
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 AATCTAATAATACATCTTCAACATCACCTACCACTATAACTCGGGTATCTTCACCAGTTA 775
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 ACCATATTGGAGCTATTCCACGACCCCATGCTAGTCCATCAATTATTGAGCGACAAGGTT 835
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 CACTAAGAATATTTCCAAAATTACAAGAGAATAGTCCTTTTAAAAGAGATCTTTCATTAC 895
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 GTCTGGAAGGAGTTCCTTCGAATGTACGCCGTTTGGCTGGAATAATTCAAAGTGCACCTA 955
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 TAGCGGAGGAACCAGACACAGAATTTGAATCAAAGAAACCAGGAGTATTTGTTAAAAGTG 1015
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 ACGAACGACCTGAAAAAAGTGAATTAGTTACTGCATGTTCTACATCTAATTGGAGCTCAT 1075
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 CTATAGTAGTGGCCAGTTCATCTTCGAACCTCCCAATTATGAATGGTTTAACTGTAGTAA 1135
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 CTCAATCGTTTGTACCTAGTAGCCACTTTACAAGCGATTTCAATCTTGATCCTAAAACAT 1195
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 CACAGGCATTTATACCTTCAGTTATTTCAGATCCTTTTTCTGCTGCCCCAATCAATCCAG 1255
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 CTACAATACAACGGCACTATCAGATGGAATTGCAACAACAACAGCAACACCAGCAAATAA 1315
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 CAGGTTCTTCACTACTAAGTTCCAAAGCTCCAATGGCTGTTGTTTCAACTATCAGTTCTA 1375
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 CACCGACTTCACCATTTTTAGGCGGACCACCAATTGCTGCTCCAACCTTATCGATTAATA 1435
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 CTTATAATTCTAGTCCATGGGGCAGTTACATATCCACAGATGCAACAATTTAACAAATCT 1495
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 ATTATTCAATATAATTCAAATTTACCCAGTTCTCCTACTGGTACAATGAATTCTCAACAA 1555
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 ATCTAACTTATCCTTCCAATGGTGTTTTAAAATCAGGTTCTACAAATCCATGGTCATCAT 1615
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 CAATGGGATTGGTTTATGGGAGAAACGTTAGTAATACAAACTGGCAAGCTTCATCGCCAT 1675
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 CGTCATTACCACCTACTCTTCTACCTCCAGAGCCTGATTGTCTTTCGGATCCATTCGATT 1735
consensus_9885#1 ------------------------------------------------------------
consensus_9885#0 TAGGTTGG 1743
consensus_9885#1 --------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||