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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1116 fasta sequence
[ACCTGGCTGTGTACTTGCTGAACTTTTGTTAGCTCACCCAATTTTTCCTGGAGAAACTGGTGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCACGAAATGAATCCTGACTATCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTTCTCGAACATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTTTAATGGTAGAACAACCACAACCGCATCATATAACAGATACTGTATGTATTGATCGCACAGGACAAAATCACAATCCCTCTACATCAGAAGGGAGTAAATTATCGGATTCAGAAATTCGATTAGCGGTTATTGCTCCATCTCATAGTTCGGATAACATACGTCTCACATCAAATAACAGTAACAACAATGATAATAGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTTAGAATCCAGGAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCACATTCACAACTTAATAATCATTTCTCGTGTAATTTCC]
[-] EMBL CD069422 [ACCTGGCTGTGTACTTGCTGAACTTTTGTTAGCTCACCCAATTTTTCCTGGAGAAACTGGTGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCACGAAATGAATCCTGACTATCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTCCTCGAACATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTg ]
[-] EMBL CD069493 [ gTGGTGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCACGAAATGAATCCTGACTATCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTTCTCGAACATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTTTAATGGTAGAAC ]
[-] EMBL CD131045 [ TGGTGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCACGAAATGAATCCTGACTACCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAAT ]
[+] EMBL AI068194 [ ACCTCTACCTCCATTATTTAATTTGACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTTCTCGAACATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTTTAATGGTAGAACAACCACAACCGCATCATATAACAGATACTGTATGTATTGATCGCACAGGACAAAATCACAATCCCTCTACATCAGAAGGGAGTAAATTATCGGATTCAGAAATTCGATTAGCGGTTATTGCTCCATCTCATAGTTCGGATAACATACGTCTCACATCAAATAACAGTAACAACAATGATAATAGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTTAGAATCCAGGAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTANATGACAATCATCACAACACAGAATTATAGTAAA ]
[-] EMBL CD195318 [ GTTCGGATAACATACGTCTCACATCAAATAACAGTAACAACAATGATAATAGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTTAGAATCCAGGAATATTCAAGGTGTCAATAGTTAGATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCCGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCACATTCACAACTTAATAATCATTTCTCGTGTAATTTCC]
[-] EMBL CD195383 [ AGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTTAGAATCCAGGAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCACATTCACAACTTAATAATCATTTCTCGTGTAATTTCC]
[-] EMBL CD195144 [ GAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTCTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCGCATTCACAACTTAATAATCATTTCTCGTGTAATTTCC]
[-] EMBL CD195122 [ GAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTCTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCGCATTCACAACTTAATAATCATTTCTCGTGTAATTTCC]
[-] EMBL CD195154 [ TGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCNTACAGTGACATNTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTATCAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTG ]
consensusID : consensus_9887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 555 fasta sequence
[GGAAACAATCCCTCTTTTGTTTGTAAAGCTTTATATGTACCAACTTTTTCGAAGTTTGGCCTACATACATCATAAAGGCATTTGTCATCGGGATATAAAACCCCAAAATTTACTTTTAAATCCAGCTACAGCTGTTTTAAAATTATGCGATTTCGGAAGTGCGAAGGTTCTAGTTCGCGGCGAACCTAACGTTTCTTACATTTGTTCCCGTTATTACCGGGCTCCTGAATTGATATTTGGTGCTGTGGATTACACATGTCAGATTGATGTTTGGTCAGCTGGCTGTGTACTTGCTGAACTTTTGTTAGGTCAGCCAATTTTTCCTGGAGAAAGTGGTGTAGACCAGCTTGTTGAAATTATCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAA]
[+] EMBL CD195418 [GGAAACAATCCCTCTTTTGTTTGTAAAGCTTTATATGTACCAACTTTTTCGAAGTTTGGCCTACATACATCATAAAGGCATTTGTCATCGGGATATAAAACCCCAAAATTTACTTTTAAATCCAGCTACAGCTGTTTTAAAATTATGCGATTTCGGAAGTGCGAAGGTTCTAGTTCGCGGCGAACCTAACGTTTCTTACATTTGTTCCCGTTATTACCGGGCTCCTGAATTGATATTTGGTGCTGTGGATTACACATGTCAGATTGATGTTTGGTCAGCTGG ]
[-] EMBL CD129715 [ GCGAACCTAACGTTTCTTACATTTGTTCCCGTTATTACCGGGCTCCTGAATTGATATTTGGTGCTGTGGATTACACATGTCAGATTGATGTTTGGTCAGCTGGCTGTGTACTTGCTGAACTTTTGTTAGGTCAGCCAATTTTTCCTGGAGAAAGTGGTGTAGACCAGCTTGTTGAAATTATCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAA]
[-] EMBL CD179642 [ AGTTGGTGTCACAGCTACTCGACTACACACCGTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAACCCACTAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9887#0 ACCTGGCTGTGTACTTGCTGAACTTTTGTTAGCTCACCCAATTTTTCCTGGAGAAACTGG 60
consensus_9887#1 ------------------------------------------------------------
consensus_9887#0 TGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCA 120
consensus_9887#1 ------------------------------------------------------------
consensus_9887#0 CGAAATGAATCCTGACTATCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTC 180
consensus_9887#1 ------------------------------------------------------------
consensus_9887#0 AAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGA 240
consensus_9887#1 ------------------------------------------------------------
consensus_9887#0 CTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGA 300
consensus_9887#1 ------------------------------------------------------------
consensus_9887#0 GTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTT 360
consensus_9887#1 ------------------------------------------------------------
consensus_9887#0 GACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTTCTCGAAC 420
consensus_9887#1 ------------------------------------------------------------
consensus_9887#0 ATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTTTAATGGT 480
consensus_9887#1 ------------------------------------------------------------
consensus_9887#0 AGAACAACCACAACCGCATCATATAACAGATACTGTATGTATTGATCGCACAGGACAAAA 540
consensus_9887#1 --GGAAACAATCCCTCTTTTGTTTGTAAAGCTTTATATGTACCAACTTTTT----CGAAG 54
*** * * * * * * * ****** * * **
consensus_9887#0 TCACAATCCCTCTACATCAGAAGGGAGTAAATTATCGGATTCAGAAATTCGATTAGCGGT 600
consensus_9887#1 TT-TGGCCTACATACATCATAAAGGCATTTGTCATCGGGATATAAAACCCCAAAATTTAC 113
* * ******* ** ** * * ***** * *** * * *
consensus_9887#0 TATTGCTCCATCTCATAGTTCGGATAACATACGTCTCACATCAAATAACAGTAACAACAA 660
consensus_9887#1 TTTTAAATCCAGCTACAGCTGTTTTAAAAT-TATGCGATTTCGGA----AGTGCGAAGGT 168
* ** * * ** * *** ** * * ** * *** **
consensus_9887#0 TGATAATAGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTT 720
consensus_9887#1 TCTAGTTCGCGGCGAACCTAACGTTTCTTA-CATTTG-----TTCCCGTTATTA----CC 218
* * ** ** * * * * ** * ** *** **** * ** *
consensus_9887#0 AGAATCCAGGAAT-ATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAA 779
consensus_9887#1 GGGCTCCTGAATTGATATTTGGTGCTGTGGATTACACATGTCAGATTGATGTTTGGTCAG 278
* *** * * * ** **** *** * ** ** * * *
consensus_9887#0 ATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACG 839
consensus_9887#1 CTGGCTGTGTACTTGCTGAACTTTTGTTAGGTCAGCCAATTTTTCCTGGAGAAAGTGGTG 338
* * * ** ** ** * * * ** *** ** * *
consensus_9887#0 -AAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGAC 898
consensus_9887#1 TAGACCAGCTTGTTGAAATTATCAA---AAGTTTTTCGTCCT-CGTGTTCCATCAGAAGC 394
* ** ** ** ** ** * * **** ******* * **** * ** *
consensus_9887#0 AAGT--ACTAATTATATACATGTACAAATGTTTAACAACAAAATAAT--ATCTCTTAAGA 954
consensus_9887#1 GATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGA 454
* * * * * * * * * * * * ***** ** * * ***
consensus_9887#0 TTAATGTA-GCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTA 1013
consensus_9887#1 TGCTTGTTTACACTGCTTTTTTGATGA--GTTAAGACAAGAAGGAACTAGACTTCCCAAT 512
* *** * * * * * ***** * * **** * *** ** * *
consensus_9887#0 AAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATA 1073
consensus_9887#1 GACAGAC---CTCTACCTCCATTATTTAATTTGACACCCTACGAAA-------------- 555
* * * ** * *** * **** ** * *
consensus_9887#0 CTCTCACATTCACAACTTAATAATCATTTCTCGTGTAATTTCC 1116
consensus_9887#1 -------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||