These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1116 fasta sequence [ACCTGGCTGTGTACTTGCTGAACTTTTGTTAGCTCACCCAATTTTTCCTGGAGAAACTGGTGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCACGAAATGAATCCTGACTATCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTTCTCGAACATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTTTAATGGTAGAACAACCACAACCGCATCATATAACAGATACTGTATGTATTGATCGCACAGGACAAAATCACAATCCCTCTACATCAGAAGGGAGTAAATTATCGGATTCAGAAATTCGATTAGCGGTTATTGCTCCATCTCATAGTTCGGATAACATACGTCTCACATCAAATAACAGTAACAACAATGATAATAGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTTAGAATCCAGGAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCACATTCACAACTTAATAATCATTTCTCGTGTAATTTCC] [-] EMBL CD069422 [ACCTGGCTGTGTACTTGCTGAACTTTTGTTAGCTCACCCAATTTTTCCTGGAGAAACTGGTGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCACGAAATGAATCCTGACTATCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTCCTCGAACATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTg ] [-] EMBL CD069493 [ gTGGTGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCACGAAATGAATCCTGACTATCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTTCTCGAACATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTTTAATGGTAGAAC ] [-] EMBL CD131045 [ TGGTGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCACGAAATGAATCCTGACTACCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAAT ] [+] EMBL AI068194 [ ACCTCTACCTCCATTATTTAATTTGACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTTCTCGAACATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTTTAATGGTAGAACAACCACAACCGCATCATATAACAGATACTGTATGTATTGATCGCACAGGACAAAATCACAATCCCTCTACATCAGAAGGGAGTAAATTATCGGATTCAGAAATTCGATTAGCGGTTATTGCTCCATCTCATAGTTCGGATAACATACGTCTCACATCAAATAACAGTAACAACAATGATAATAGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTTAGAATCCAGGAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTANATGACAATCATCACAACACAGAATTATAGTAAA ] [-] EMBL CD195318 [ GTTCGGATAACATACGTCTCACATCAAATAACAGTAACAACAATGATAATAGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTTAGAATCCAGGAATATTCAAGGTGTCAATAGTTAGATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCCGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCACATTCACAACTTAATAATCATTTCTCGTGTAATTTCC] [-] EMBL CD195383 [ AGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTTAGAATCCAGGAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCACATTCACAACTTAATAATCATTTCTCGTGTAATTTCC] [-] EMBL CD195144 [ GAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTCTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCGCATTCACAACTTAATAATCATTTCTCGTGTAATTTCC] [-] EMBL CD195122 [ GAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTCTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCGCATTCACAACTTAATAATCATTTCTCGTGTAATTTCC] [-] EMBL CD195154 [ TGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCNTACAGTGACATNTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTATCAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTG ] consensusID : consensus_9887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 555 fasta sequence [GGAAACAATCCCTCTTTTGTTTGTAAAGCTTTATATGTACCAACTTTTTCGAAGTTTGGCCTACATACATCATAAAGGCATTTGTCATCGGGATATAAAACCCCAAAATTTACTTTTAAATCCAGCTACAGCTGTTTTAAAATTATGCGATTTCGGAAGTGCGAAGGTTCTAGTTCGCGGCGAACCTAACGTTTCTTACATTTGTTCCCGTTATTACCGGGCTCCTGAATTGATATTTGGTGCTGTGGATTACACATGTCAGATTGATGTTTGGTCAGCTGGCTGTGTACTTGCTGAACTTTTGTTAGGTCAGCCAATTTTTCCTGGAGAAAGTGGTGTAGACCAGCTTGTTGAAATTATCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAA] [+] EMBL CD195418 [GGAAACAATCCCTCTTTTGTTTGTAAAGCTTTATATGTACCAACTTTTTCGAAGTTTGGCCTACATACATCATAAAGGCATTTGTCATCGGGATATAAAACCCCAAAATTTACTTTTAAATCCAGCTACAGCTGTTTTAAAATTATGCGATTTCGGAAGTGCGAAGGTTCTAGTTCGCGGCGAACCTAACGTTTCTTACATTTGTTCCCGTTATTACCGGGCTCCTGAATTGATATTTGGTGCTGTGGATTACACATGTCAGATTGATGTTTGGTCAGCTGG ] [-] EMBL CD129715 [ GCGAACCTAACGTTTCTTACATTTGTTCCCGTTATTACCGGGCTCCTGAATTGATATTTGGTGCTGTGGATTACACATGTCAGATTGATGTTTGGTCAGCTGGCTGTGTACTTGCTGAACTTTTGTTAGGTCAGCCAATTTTTCCTGGAGAAAGTGGTGTAGACCAGCTTGTTGAAATTATCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAA] [-] EMBL CD179642 [ AGTTGGTGTCACAGCTACTCGACTACACACCGTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAACCCACTAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9887#0 ACCTGGCTGTGTACTTGCTGAACTTTTGTTAGCTCACCCAATTTTTCCTGGAGAAACTGG 60 consensus_9887#1 ------------------------------------------------------------ consensus_9887#0 TGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCA 120 consensus_9887#1 ------------------------------------------------------------ consensus_9887#0 CGAAATGAATCCTGACTATCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTC 180 consensus_9887#1 ------------------------------------------------------------ consensus_9887#0 AAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGA 240 consensus_9887#1 ------------------------------------------------------------ consensus_9887#0 CTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGA 300 consensus_9887#1 ------------------------------------------------------------ consensus_9887#0 GTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTT 360 consensus_9887#1 ------------------------------------------------------------ consensus_9887#0 GACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTTCTCGAAC 420 consensus_9887#1 ------------------------------------------------------------ consensus_9887#0 ATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTTTAATGGT 480 consensus_9887#1 ------------------------------------------------------------ consensus_9887#0 AGAACAACCACAACCGCATCATATAACAGATACTGTATGTATTGATCGCACAGGACAAAA 540 consensus_9887#1 --GGAAACAATCCCTCTTTTGTTTGTAAAGCTTTATATGTACCAACTTTTT----CGAAG 54 *** * * * * * * * ****** * * ** consensus_9887#0 TCACAATCCCTCTACATCAGAAGGGAGTAAATTATCGGATTCAGAAATTCGATTAGCGGT 600 consensus_9887#1 TT-TGGCCTACATACATCATAAAGGCATTTGTCATCGGGATATAAAACCCCAAAATTTAC 113 * * ******* ** ** * * ***** * *** * * * consensus_9887#0 TATTGCTCCATCTCATAGTTCGGATAACATACGTCTCACATCAAATAACAGTAACAACAA 660 consensus_9887#1 TTTTAAATCCAGCTACAGCTGTTTTAAAAT-TATGCGATTTCGGA----AGTGCGAAGGT 168 * ** * * ** * *** ** * * ** * *** ** consensus_9887#0 TGATAATAGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTT 720 consensus_9887#1 TCTAGTTCGCGGCGAACCTAACGTTTCTTA-CATTTG-----TTCCCGTTATTA----CC 218 * * ** ** * * * * ** * ** *** **** * ** * consensus_9887#0 AGAATCCAGGAAT-ATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAA 779 consensus_9887#1 GGGCTCCTGAATTGATATTTGGTGCTGTGGATTACACATGTCAGATTGATGTTTGGTCAG 278 * *** * * * ** **** *** * ** ** * * * consensus_9887#0 ATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACG 839 consensus_9887#1 CTGGCTGTGTACTTGCTGAACTTTTGTTAGGTCAGCCAATTTTTCCTGGAGAAAGTGGTG 338 * * * ** ** ** * * * ** *** ** * * consensus_9887#0 -AAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGAC 898 consensus_9887#1 TAGACCAGCTTGTTGAAATTATCAA---AAGTTTTTCGTCCT-CGTGTTCCATCAGAAGC 394 * ** ** ** ** ** * * **** ******* * **** * ** * consensus_9887#0 AAGT--ACTAATTATATACATGTACAAATGTTTAACAACAAAATAAT--ATCTCTTAAGA 954 consensus_9887#1 GATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGA 454 * * * * * * * * * * * * ***** ** * * *** consensus_9887#0 TTAATGTA-GCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTA 1013 consensus_9887#1 TGCTTGTTTACACTGCTTTTTTGATGA--GTTAAGACAAGAAGGAACTAGACTTCCCAAT 512 * *** * * * * * ***** * * **** * *** ** * * consensus_9887#0 AAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATA 1073 consensus_9887#1 GACAGAC---CTCTACCTCCATTATTTAATTTGACACCCTACGAAA-------------- 555 * * * ** * *** * **** ** * * consensus_9887#0 CTCTCACATTCACAACTTAATAATCATTTCTCGTGTAATTTCC 1116 consensus_9887#1 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||