These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9904#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 902 fasta sequence [TCTCCAAATTAGTCATATGTTCTTCTTCTTCTATGGAAGCATTTATTCGTGTTATCTTATCGTCAAAGAACTGTGTAAACCACTCGAGATGTTGCTTTTTGTCGTCAACACTAAAATATGGGTTTTTCGAAAGCCCAGTCCAAACAAGTTCCAAGAACGATGCCAATGGTTTACACTTGAGATGTTCCTTATTTAGGTGGTTTTCCAGAAATACATGTTCATGAAAAGGTACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCCACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACATTTTCATGAGTGAATATATTTACATTAGCCGGTGAAGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCTTTGATGTTACGATGTTTGTAGATTTTGCATAGTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGCTGCGTTTTAATTGTTTTGTATTTGCTGATCTGAACGGTGTCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGA-ATAGTCCTTCA-ATCAGTATTTTACCAGCCATAACAATAACAGTCCATAACAATAACAGGAGAATGAGTGACGACCAACAAGTTACGCGCCTGGGAGACTTTCCCCTTCCA] [+] EMBL CD145897 [TCTCCAAATTAGTCATATGTTCTTCTTCTTCTATGGAAGCATTTATTCGTGTTATCTTATCGTCAAAGAACTGTGTAAACCACTCGAGATGTTGCTTTTTGTCGTCAACACTAAAATATGGGTTTTTCGAAAGCCCAGTCCAAACAAGTTCCAAGAACGATGCCAATGGTTTACACTTGAGATGTTCCTTATTTAGGTGGTTTTCCAGAAATACATGTTCATGAAAAGGTACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCCACTTCAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACATTTTCATGAGTGAATATATTTACATTAGCCGGTGAAGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCTTTGATGTTACGATGTTTGTAGATTNTGCATAGTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGC ] [+] EMBL CD145523 [ CAAAGAACTGTGTAAACCACTCGAGATGTTGCTTTTTGTCGTCAACACTAAAATATGGGTTTTTCGAAAGCCCAGTCCAAACAAGTTCCAAGAACGATGCCAATGGTTTACACTTGAGATGTTCCTTATTTAGGTGGTCTTCCAGAAATACATGTTCATGAAAAGGTACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCCACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCT ] [+] EMBL CD066851 [ CATGAAAAGGTACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCCACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACATTTTCATGAGTGAATATATTTACATTAGCCGGTGAAGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCTTTGATGTTACGATGTTTGTAGATTTTGCATAGTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGCTGCGTTTTAATTGTTTTGTATTTGCTGATCTGAA ] [-] EMBL CD066921 [ ATGAAAAGGGACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCCACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTTCAATGAGTTGCAAGAATCAGCAGGTAGGACATTTTCATGAGTGAATATATTTACATTAGCCGGTGAAGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCTTTGATGTTACGATGTTTGTAGATTTTGCATAGTCAGACACATCACCTGATGTA ] [+] EMBL CD113314 [ ACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACATTTTCATGAGTGAATATATTTACATTAGCCGGTGAAGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCTTTGATGTTACGATGTTTGTAGATTTTGCATAGTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGCTGCGTTTTAATTGTTTTGTATTTGCTGATCTGAACGGTGTCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGA ATAGTCCTTCA ATCAGTATTTTACCATCCATAACAATAACAG ] [-] EMBL CD151803 [ CCATTCTTCGAACTGG TGTTTGGAAGAGCACAGCTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTGTAATGAGTCGCAAGAATCAGCAGGTAGGACATTTTCATGAGTGAATATATTTACATTAGCCGGTGAAGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCAGGACGATATTCTTTAATGAAATCGATAAGGAGATCCTTTGATGTTGCGATGTTTGTAGATTTTGCATAGTCAGACACATCACCTGATGTATCGACAGACTCTAGATTATCACTATTGCCTTTGCTGCGTTTTAAATGTTCTGTATTTGCTGATCTGAACGGTGTCGCAGTCAAGCATTTGCAATGATTACAATTAGCATGGATCCTCGAAAATAGGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTGGTAACTTGGAGGTTCTCAGAGATAGTCCTTCACATCAGTATTTTACCtgg ] [-] EMBL CD178393 [ AATCTTGTTGTTGGTGCGTCATTATCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCTTTGATGTTACGATGTTTGTAGATTTTGCATAGTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGCTGCGTTTTAATTGTTTTGTATTTGCTGATCTGAACGGTGTCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAGATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGA ATAGTCCTTCA ATCAGTATTTTA CACTGAAAACACAAACCATCCATAACAATAACAGGAGAATGAGTGACGACCAACAAGTTACGCGCCTGGGAGACTTTCCCCTTCCA] [-] EMBL CD145440 [ ATCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCTTTGATGTTACGATGTTTGTAGATTTTGCATAGTCAGACACATCACCTGATGTATCAACAGACTCTAGATTACCACTATTGCCTTTGCTGCGTTTTAATTGTTTTGTATTTGCTGATCTGAACGGTGTCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGA ATAGTCCTTCA ATCAGTATTTTA CCATAACAATAACAGg ] consensusID : consensus_9904#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 834 fasta sequence [CAAGTTCCAAGAACGATGCCAATGGTTTACACTTGAGATGTTCCTTATTTAGGTGGTTTTCCAGAAATACATGTTCATGAAAAGGTACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCCACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACATCTTCATGAGTGAATATATTTACATTAGCCGGTGAGGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCTTGCATAAAGTTACAATTGCAAATAGAAAACAAGCTTACCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCCTAAAATTGTCCGTCAAAAGTTACTAATATAACAAAACAGCACTGACATACTTTGATGTTACGATGTTTGTAGATTTTGCATAGCTACAGAGTAAATCATTAAAAAAACGACTTACTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGCTGCGTTNTAATTGTTTTGTATTTGCTGATCTGAACGGTGTCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGAATAGTCCTTCAATCAGTATTTTACCATAACAATAACAGGAGAATGAGTGACGACCAACAAGTT] [+] EMBL CD201900 [CAAGTTCCAAGAACGATGCCAATGGTTTACACTTGAGATGTTCCTTATTTAGGTGGTTTTCCAGAAATACATGTTCATGAAAAGGTACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCCACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACATCTTCATGAGTGAATATATTTACATTAGCCGGTGAGGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCTTGCATAAAGTTACAATTGCAAATAGAAAACAAGCTTACCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCCTAAAATTGTCCGTCAAAAGTTACTAATATAACAAAACAGCACTGACATACTTTGATGTTACGATGTTTGTAGATTTTGCATAGCTACAGAGTAAATCATTAAAAAAACGACTTACTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGCTGC ] [+] EMBL CD067103 [ GTTCATGAAAAGGTACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCTACTGTCCACTTTAACCATTTTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCT ] [-] EMBL CD143241 [ CTTTGATGTTACGATGTTCGTAGATNTNGCATAGCTACAGAGTAAATCATTAAAAAANCGACTTACTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGCTGCGTTNTAATTGTTTTGTATTTGCTGATCTGAACGGTGTCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGAATAGTCCTTCAATCAGTATTTTACCATAACAATAACAGGAGAATGAGTGACGACCAACAAGTT] consensusID : consensus_9904#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 209 fasta sequence [TTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGAATAGTCGCATGAACGTTTTCAACAAGCAGGTTAGTCATAAAGATCTCATAATGTCCATATGGAATAACCCTTGTGGCCCAATTCTTTT] [+] EMBL CD147218 [TTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGAATAGTCGCATGAACGTTTTCAACAAGCAGGTTAGTCATAAAGATCTCATAATGTCCATATGGAATAACCCTTGTGGCCCAATTCTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9904#0 TCTCCAAATTAGTCATATGTTCTTCTTCTTCTATGGAAGCATTTATTCGTGTTATCTTAT 60 consensus_9904#1 ------------------------------------------------------------ consensus_9904#2 ------------------------------------------------------------ consensus_9904#0 CGTCAAAGAACTGTGTAAACCACTCGAGATGTTGCTTTTTGTCGTCAACACTAAAATATG 120 consensus_9904#1 ------------------------------------------------------------ consensus_9904#2 ------------------------------------------------------------ consensus_9904#0 GGTTTTTCGAAAGCCCAGTCCAAACAAGTTCCAAGAACGATGCCAATGGTTTACACTTGA 180 consensus_9904#1 ------------------------CAAGTTCCAAGAACGATGCCAATGGTTTACACTTGA 36 consensus_9904#2 ------------------------------------------------------------ consensus_9904#0 GATGTTCCTTATTTAGGTGGTTTTCCAGAAATACATGTTCATGAAAAGGTACATCTAACT 240 consensus_9904#1 GATGTTCCTTATTTAGGTGGTTTTCCAGAAATACATGTTCATGAAAAGGTACATCTAACT 96 consensus_9904#2 ------------------------------------------------------------ consensus_9904#0 CGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCC 300 consensus_9904#1 CGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCC 156 consensus_9904#2 ------------------------------------------------------------ consensus_9904#0 ACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCA 360 consensus_9904#1 ACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCA 216 consensus_9904#2 ------------------------------------------------------------ consensus_9904#0 AATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACAT 420 consensus_9904#1 AATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACAT 276 consensus_9904#2 ------------------------------------------------------------ consensus_9904#0 TTTCATGAGTGAATATATTTACATTAGCCGGTGAAGGAAGATCGACGAATCTTGTTGTTG 480 consensus_9904#1 CTTCATGAGTGAATATATTTACATTAGCCGGTGAGGGAAGATCGACGAATCTTGTTGTTG 336 consensus_9904#2 ------------------------------------------------------------ consensus_9904#0 GTGCGTCATTATC----------------------------------------AGGACGA 500 consensus_9904#1 GTGCGTCATTATCTTGCATAAAGTTACAATTGCAAATAGAAAACAAGCTTACCAGGACGA 396 consensus_9904#2 ------------------------------------------------------------ consensus_9904#0 TATTCTTTAATGAAATCGCTAAGGAGATCC------------------------------ 530 consensus_9904#1 TATTCTTTAATGAAATCGCTAAGGAGATCCCTAAAATTGTCCGTCAAAAGTTACTAATAT 456 consensus_9904#2 ------------------------------------------------------------ consensus_9904#0 ---------------------TTTGATGTTACGATGTTTGTAGATTTTGCATAG------ 563 consensus_9904#1 AACAAAACAGCACTGACATACTTTGATGTTACGATGTTTGTAGATTTTGCATAGCTACAG 516 consensus_9904#2 ------------------------------------------------------------ consensus_9904#0 --------------------------TCAGACACATCACCTGATGTATCAACAGACTCTA 597 consensus_9904#1 AGTAAATCATTAAAAAAACGACTTACTCAGACACATCACCTGATGTATCAACAGACTCTA 576 consensus_9904#2 ------------------------------------------------------------ consensus_9904#0 GATTATCACTATTGCCTTTGCTGCGTTTTAATTGTTTTGTATTTGCTGATCTGAACGGTG 657 consensus_9904#1 GATTATCACTATTGCCTTTGCTGCGTTNTAATTGTTTTGTATTTGCTGATCTGAACGGTG 636 consensus_9904#2 ------------------------------------------------------------ consensus_9904#0 TCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAAT 717 consensus_9904#1 TCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAAT 696 consensus_9904#2 --------------TTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAAT 46 ********************************************** consensus_9904#0 AAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAAC 777 consensus_9904#1 AAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAAC 756 consensus_9904#2 AAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAAC 106 ************************************************************ consensus_9904#0 TTGGAGGTTCTCAGAATAGTCCTTCAATCAGTATTTTACCAGCCATAACAATAACAGTCC 837 consensus_9904#1 TTGGAGGTTCTCAGAATAGTCCTTCAATCAGTATTTTACCA------------------- 797 consensus_9904#2 TTGGAGGTTCTCAGAATAGTCGCATGAAC-GTTTTCAACAAGCAGGTTAGTCATAAAGAT 165 ********************* * * ** ** ** * consensus_9904#0 ATAACAATA-----ACAGGAGAATGAGTGACGACCAACAAGTTACGCGCCTGGGAGACTT 892 consensus_9904#1 -TAACAATA-----ACAGGAGAATGAGTGACGACCAACAAGTT----------------- 834 consensus_9904#2 CTCATAATGTCCATATGGAATAACCCTTGTGGCCCAATTCTTTT---------------- 209 * * *** * * * ** ** * **** ** consensus_9904#0 TCCCCTTCCA 902 consensus_9904#1 ---------- consensus_9904#2 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||